# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 281 MipZ PF09140.6 261 2.1e-10 31.5 0.1 1 2 7.8e-08 2.8e-06 18.0 0.0 3 78 5 80 3 105 0.78 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 281 MipZ PF09140.6 261 2.1e-10 31.5 0.1 2 2 6.8e-06 0.00025 11.6 0.0 81 125 121 165 103 176 0.82 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 281 YhjQ PF06564.7 244 8e-09 26.6 0.0 1 1 3.8e-09 1.4e-07 22.6 0.0 8 150 9 171 1 175 0.71 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_10 - 837 DUF87 PF01935.12 229 2.4e-11 35.3 0.9 1 2 0.0037 0.13 3.4 0.4 106 167 31 91 27 140 0.66 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 DUF87 PF01935.12 229 2.4e-11 35.3 0.9 2 2 5e-11 1.8e-09 29.2 0.0 23 212 467 660 459 668 0.64 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_22 PF13401.1 131 0.0002 13.0 0.0 1 1 4.9e-05 0.0018 9.9 0.1 3 24 466 487 463 492 0.88 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_17 PF13207.1 121 6.7e-06 18.4 0.0 1 1 9.9e-07 3.6e-05 16.1 0.0 2 47 470 520 469 603 0.65 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_21 PF13304.1 303 0.00018 12.9 0.2 1 1 5e-06 0.00018 12.9 0.2 3 90 471 575 470 594 0.84 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_19 - 281 ArsA_ATPase PF02374.10 305 4.6e-10 30.4 0.2 1 1 3.2e-11 1.2e-09 29.1 0.2 9 137 11 149 3 154 0.73 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_33 - 452 T2SE PF00437.15 272 0.00024 11.5 0.0 1 1 1.1e-05 0.00038 10.8 0.0 129 162 196 227 166 255 0.78 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 1_19 - 281 Fer4_NifH PF00142.13 273 1.1e-06 19.5 0.1 1 1 6.3e-08 2.3e-06 18.4 0.1 8 53 11 56 6 82 0.85 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_10 - 837 AAA_16 PF13191.1 185 0.00017 13.0 0.0 1 1 1.3e-05 0.00048 11.6 0.0 12 48 454 491 452 572 0.77 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_23 PF13476.1 202 0.00067 11.5 7.4 1 2 0.0072 0.26 3.0 2.9 131 200 21 93 7 136 0.67 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_23 PF13476.1 202 0.00067 11.5 7.4 2 2 7e-05 0.0025 9.6 0.0 19 41 467 489 454 645 0.81 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_19 - 281 CbiA PF01656.18 195 8.2e-30 95.1 0.3 1 1 2.8e-31 1e-29 94.8 0.3 2 193 6 240 5 242 0.79 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_10 - 837 AAA_14 PF13173.1 128 0.00016 13.1 0.1 1 3 0.034 1.2 0.5 0.0 65 104 357 394 287 409 0.66 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_14 PF13173.1 128 0.00016 13.1 0.1 2 3 0.00037 0.013 6.8 0.0 3 39 468 505 466 582 0.77 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_14 PF13173.1 128 0.00016 13.1 0.1 3 3 0.04 1.4 0.3 0.0 5 94 720 739 668 809 0.65 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_19 - 281 AAA_31 PF13614.1 157 2.3e-10 32.1 0.4 1 1 6.8e-10 2.4e-08 25.5 0.4 9 154 11 174 4 176 0.71 # 15391 # 16233 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_33 - 452 FtsK_SpoIIIE PF01580.13 205 1e-29 94.9 0.0 1 1 4.3e-31 1.5e-29 94.3 0.0 11 204 168 343 162 344 0.92 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 1_10 - 837 ABC_tran PF00005.22 137 7.1e-05 14.6 0.1 1 1 9.8e-06 0.00035 12.4 0.1 7 40 463 496 458 689 0.82 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_10 PF12846.2 304 3.9e-37 119.7 0.1 1 2 0.022 0.4 1.4 0.0 75 99 30 60 10 157 0.82 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_10 - 837 AAA_10 PF12846.2 304 3.9e-37 119.7 0.1 2 2 2.8e-37 5.1e-36 116.0 0.0 1 302 467 777 467 779 0.87 # 6127 # 8637 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_33 - 452 AAA_10 PF12846.2 304 6e-07 20.6 0.6 1 2 2.1e-05 0.00038 11.4 0.1 2 38 196 231 195 255 0.84 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 1_33 - 452 AAA_10 PF12846.2 304 6e-07 20.6 0.6 2 2 0.00043 0.0078 7.1 0.0 218 266 289 347 264 363 0.80 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 1_33 - 452 ResIII PF04851.10 184 8.7e-05 13.9 0.2 1 1 5.9e-06 0.00021 12.6 0.1 9 63 182 234 170 276 0.75 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 1_33 - 452 DUF853 PF05872.7 504 5.5e-05 13.0 0.0 1 1 2.7e-06 9.8e-05 12.2 0.0 22 67 196 241 175 258 0.81 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 1_33 - 452 AAA_25 PF13481.1 194 0.0001 13.2 0.1 1 1 7.7e-06 0.00028 11.8 0.1 36 82 198 242 192 339 0.60 # 24890 # 26245 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.347 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/253e0cb1-5a9f-4a57-aa97-a7b4b8010a29 # Target file: checkm_output/bins/pGCA_000271405.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000271405.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/253e0cb1-5a9f-4a57-aa97-a7b4b8010a29 checkm_output/bins/pGCA_000271405.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:37 2020 # [ok]