# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 353 Mg_chelatase PF01078.16 207 5.6e-06 17.9 0.0 1 1 1.3e-07 8.4e-06 17.4 0.0 1 54 161 214 161 226 0.87 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 cobW PF02492.14 178 0.00042 12.1 0.0 1 1 1.1e-05 0.00073 11.3 0.0 6 34 188 216 183 222 0.80 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 229 MipZ PF09140.6 261 4.5e-11 34.6 3.9 1 2 1.4e-06 9.3e-05 13.9 0.2 2 39 3 39 2 47 0.88 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_31 - 229 MipZ PF09140.6 261 4.5e-11 34.6 3.9 2 2 4.3e-08 2.8e-06 18.8 0.5 80 135 61 114 47 221 0.88 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 141 SSB PF00436.20 104 4e-41 131.5 0.0 1 1 7.4e-43 4.9e-41 131.2 0.0 1 104 4 108 4 108 0.99 # 3631 # 4053 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_3 - 300 Methyltransf_18 PF12847.2 112 0.0004 13.3 0.1 1 1 1.1e-05 0.00073 12.5 0.1 3 103 120 232 118 246 0.81 # 904 # 1803 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_20 - 831 DUF87 PF01935.12 229 0.00097 11.3 0.5 1 1 3.2e-05 0.0021 10.2 0.5 22 38 424 440 418 445 0.85 # 14578 # 17070 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.578 1_13 - 353 AAA_22 PF13401.1 131 0.00019 14.0 0.0 1 1 8.2e-06 0.00054 12.4 0.0 8 37 186 226 179 275 0.69 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 ATP_bind_1 PF03029.12 238 0.00059 11.7 0.0 1 1 2.7e-05 0.0018 10.1 0.0 2 23 188 209 187 215 0.87 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 229 AAA_17 PF13207.1 121 5.6e-05 16.3 0.0 1 1 2.3e-06 7.7e-05 15.9 0.0 9 78 12 86 4 180 0.74 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_13 - 353 AAA_17 PF13207.1 121 6.2e-05 16.2 0.0 1 1 6.4e-06 0.00021 14.4 0.0 5 22 188 205 184 269 0.83 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 AAA_21 PF13304.1 303 0.00021 13.6 0.0 1 1 4.8e-06 0.00032 13.0 0.0 5 34 188 215 188 236 0.70 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 MobB PF03205.9 140 5.9e-05 15.1 0.0 1 1 2.2e-06 0.00015 13.8 0.0 3 39 185 220 184 225 0.80 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 229 ArsA_ATPase PF02374.10 305 1e-06 20.3 0.1 1 1 3e-08 2e-06 19.3 0.1 3 41 4 41 2 47 0.88 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_13 - 353 T2SE PF00437.15 272 9.5e-55 177.6 0.0 1 1 2.4e-56 1.6e-54 176.9 0.0 6 266 28 325 23 330 0.95 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 229 VirC1 PF07015.6 231 1.5e-18 59.0 0.2 1 1 2.7e-20 1.8e-18 58.8 0.2 1 187 1 183 1 213 0.87 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_13 - 353 AAA_16 PF13191.1 185 0.00011 14.5 0.1 1 1 4.2e-06 0.00027 13.2 0.0 27 52 185 216 162 302 0.74 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 AAA_23 PF13476.1 202 0.00038 13.1 0.1 1 1 9.4e-06 0.00062 12.4 0.1 25 39 188 202 172 205 0.80 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 AAA_18 PF13238.1 129 0.00019 14.1 0.0 1 1 5e-06 0.00033 13.3 0.0 4 23 188 209 185 260 0.77 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 229 CbiA PF01656.18 195 1.4e-22 72.4 0.4 1 1 5.7e-24 1.9e-22 71.9 0.4 1 167 4 153 4 179 0.80 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_9 - 236 CbiA PF01656.18 195 5.7e-08 24.7 0.2 1 2 1.3e-05 0.00042 12.1 0.1 2 20 7 25 6 27 0.92 # 4518 # 5225 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.572 1_9 - 236 CbiA PF01656.18 195 5.7e-08 24.7 0.2 2 2 3.1e-05 0.001 10.8 0.0 118 167 95 143 46 166 0.86 # 4518 # 5225 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.572 1_13 - 353 AAA_29 PF13555.1 62 5.7e-05 15.0 0.0 1 1 3.3e-06 0.00022 13.1 0.0 26 46 185 205 172 212 0.78 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_11 - 560 TraG-D_C PF12696.2 128 2.9e-24 77.7 0.0 1 1 8.9e-26 5.9e-24 76.7 0.0 2 128 290 411 289 411 0.88 # 6836 # 8515 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_31 - 229 AAA_31 PF13614.1 157 9.8e-13 40.6 0.0 1 2 5.8e-11 3.8e-09 29.0 0.0 2 42 3 42 2 45 0.94 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_31 - 229 AAA_31 PF13614.1 157 9.8e-13 40.6 0.0 2 2 6.7e-05 0.0044 9.3 0.0 95 152 52 111 47 116 0.89 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_13 - 353 AAA_30 PF13604.1 196 0.00041 12.3 0.0 1 1 1.2e-05 0.00077 11.4 0.0 16 45 181 209 170 215 0.76 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_20 - 831 FtsK_SpoIIIE PF01580.13 205 0.0005 11.9 0.1 1 1 2.1e-05 0.0014 10.5 0.0 36 57 423 444 404 467 0.77 # 14578 # 17070 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.578 1_13 - 353 ABC_tran PF00005.22 137 1.8e-06 20.7 0.0 1 1 4.8e-08 3.1e-06 19.8 0.0 15 79 186 247 175 303 0.72 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 AAA_19 PF13245.1 76 8.4e-06 17.9 0.1 1 2 0.031 2 0.6 0.0 22 37 35 50 32 74 0.83 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 AAA_19 PF13245.1 76 8.4e-06 17.9 0.1 2 2 1.4e-06 9.5e-05 14.5 0.0 13 36 186 207 175 221 0.76 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_20 - 831 AAA_10 PF12846.2 304 8.2e-25 80.1 0.0 1 1 3.2e-26 2.1e-24 78.7 0.0 2 291 426 699 425 711 0.90 # 14578 # 17070 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.578 1_3 - 300 Methyltransf_21 PF05050.7 167 2.5e-06 19.8 0.7 1 1 3.2e-07 2.1e-05 16.8 0.7 112 149 197 234 124 253 0.86 # 904 # 1803 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_13 - 353 PduV-EutP PF10662.4 143 0.00038 12.3 0.1 1 2 0.036 2.4 -0.0 0.0 102 135 9 42 4 47 0.81 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 PduV-EutP PF10662.4 143 0.00038 12.3 0.1 2 2 3.7e-05 0.0024 9.7 0.0 4 23 185 204 182 216 0.87 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_11 - 560 TrwB_AAD_bind PF10412.4 386 6.3e-21 66.6 0.0 1 2 9.6e-09 6.3e-07 20.5 0.0 61 127 73 148 25 161 0.81 # 6836 # 8515 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 560 TrwB_AAD_bind PF10412.4 386 6.3e-21 66.6 0.0 2 2 7e-16 4.6e-14 44.0 0.0 242 376 287 420 244 426 0.85 # 6836 # 8515 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_11 - 560 T4SS-DNA_transf PF02534.9 469 9.1e-88 287.1 0.0 1 1 2.1e-89 1.4e-87 286.5 0.0 37 460 19 445 2 457 0.86 # 6836 # 8515 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 353 Pox_A32 PF04665.7 241 8e-05 14.3 0.0 1 1 2.5e-06 0.00017 13.3 0.0 11 33 180 202 171 209 0.83 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_31 - 229 TrkA_N PF02254.13 116 1.3e-05 17.5 0.3 1 1 7.2e-07 4.8e-05 15.7 0.6 11 82 20 97 11 125 0.72 # 24801 # 25487 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 141 tRNA_anti-codon PF01336.20 75 4.6e-05 15.6 0.0 1 1 8.7e-07 5.8e-05 15.3 0.0 30 74 55 107 29 108 0.84 # 3631 # 4053 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_13 - 353 NACHT PF05729.7 166 0.00022 13.2 0.0 1 1 6.9e-06 0.00046 12.2 0.0 6 24 188 206 184 224 0.86 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 353 AAA_28 PF13521.1 163 1.2e-05 17.7 0.0 1 1 3.1e-07 2e-05 16.9 0.0 2 31 185 219 184 255 0.74 # 8865 # 9923 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0b34663a-beda-412a-ab09-37c33b8ebafc # Target file: checkm_output/bins/pGCA_000262695.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000262695.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0b34663a-beda-412a-ab09-37c33b8ebafc checkm_output/bins/pGCA_000262695.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:36 2020 # [ok]