# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 260 MipZ PF09140.6 261 2.3e-05 13.4 0.0 1 1 3.3e-06 3.9e-05 12.7 0.0 2 42 2 46 1 105 0.78 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_4 - 260 AAA_22 PF13401.1 131 8.3e-05 12.7 0.1 1 1 1.8e-05 0.00021 11.4 0.1 14 123 11 143 3 151 0.59 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_4 - 260 AAA_17 PF13207.1 121 4.4e-06 17.5 0.1 1 1 5.8e-07 7e-06 16.8 0.1 9 85 11 92 9 246 0.80 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_4 - 260 AAA_18 PF13238.1 129 0.00016 12.0 1.8 1 1 1.8e-05 0.00022 11.5 0.3 8 79 11 83 4 93 0.78 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_4 - 260 CbiA PF01656.18 195 4.1e-07 19.5 0.5 1 2 2.1e-07 2.5e-06 16.9 0.1 2 63 4 100 3 154 0.63 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_4 - 260 CbiA PF01656.18 195 4.1e-07 19.5 0.5 2 2 0.026 0.32 0.3 0.0 26 71 190 231 183 256 0.58 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_5 - 165 RNA_pol_Rpb1_5 PF04998.12 277 8.9e-05 11.7 3.1 1 1 1e-05 0.00013 11.2 3.1 182 272 20 105 4 110 0.85 # 3248 # 3742 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273 1_4 - 260 MMR_HSR1 PF01926.18 116 4e-05 13.5 0.0 1 1 8.4e-06 0.0001 12.2 0.0 10 88 12 143 6 165 0.55 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_2 - 106 Rsm22 PF09243.5 275 3.6e-05 12.8 0.9 1 2 0.016 0.19 0.5 0.1 83 121 9 47 2 54 0.69 # 1571 # 1888 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.264 1_2 - 106 Rsm22 PF09243.5 275 3.6e-05 12.8 0.9 2 2 9.9e-06 0.00012 11.0 0.2 70 118 55 103 49 105 0.91 # 1571 # 1888 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.264 1_4 - 260 DUF258 PF03193.11 161 9.5e-05 11.5 0.2 1 2 2.5e-05 0.0003 9.9 0.0 38 60 4 45 2 104 0.66 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_4 - 260 DUF258 PF03193.11 161 9.5e-05 11.5 0.2 2 2 0.079 0.95 -1.5 0.1 107 134 210 237 200 240 0.80 # 2464 # 3243 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ac929db7-feea-46ff-abbd-f9331e1ee310 # Target file: checkm_output/bins/pGCA_000259275.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000259275.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ac929db7-feea-46ff-abbd-f9331e1ee310 checkm_output/bins/pGCA_000259275.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:31 2020 # [ok]