# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 215 Seryl_tRNA_N PF02403.17 108 0.0091 8.5 17.4 1 1 0.00032 0.023 7.2 17.4 33 99 49 121 27 125 0.71 # 27470 # 28114 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.363 1_2 - 268 MipZ PF09140.6 261 3.9e-13 41.4 0.5 1 1 4.4e-13 3.2e-11 35.2 0.2 2 136 9 160 8 183 0.69 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_2 - 268 YhjQ PF06564.7 244 8.6e-10 30.8 0.0 1 1 1.6e-11 1.1e-09 30.4 0.0 3 149 9 154 6 165 0.85 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_21 - 162 SSB PF00436.20 104 2e-39 126.2 0.6 1 1 3.9e-41 2.8e-39 125.7 0.6 1 104 2 103 2 103 0.98 # 14770 # 15255 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_38 - 675 AAA_22 PF13401.1 131 0.00061 12.4 0.5 1 3 0.039 2.8 0.6 0.0 36 69 84 129 61 182 0.72 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_22 PF13401.1 131 0.00061 12.4 0.5 2 3 0.00039 0.028 7.0 0.0 7 28 270 291 264 310 0.89 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_22 PF13401.1 131 0.00061 12.4 0.5 3 3 0.05 3.6 0.2 0.0 88 110 525 561 498 580 0.70 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_12 - 468 AAA_15 PF13175.1 415 3.1e-09 28.7 4.2 1 1 4.3e-11 3.1e-09 28.7 4.2 353 414 337 390 295 391 0.73 # 7319 # 8722 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.256 1_38 - 675 AAA_17 PF13207.1 121 5.9e-05 16.3 0.1 1 2 1.8e-05 0.0013 12.0 0.0 6 31 274 295 271 399 0.67 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_17 PF13207.1 121 5.9e-05 16.3 0.1 2 2 0.084 6.1 0.2 0.0 50 97 449 489 425 556 0.71 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_12 - 468 AAA_21 PF13304.1 303 1.3e-18 60.3 7.9 1 3 0.00011 0.0076 8.6 18.7 2 220 20 189 19 212 0.80 # 7319 # 8722 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.256 1_12 - 468 AAA_21 PF13304.1 303 1.3e-18 60.3 7.9 2 3 1.8e-20 1.3e-18 60.3 7.9 109 302 216 391 197 392 0.74 # 7319 # 8722 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.256 1_12 - 468 AAA_21 PF13304.1 303 1.3e-18 60.3 7.9 3 3 0.066 4.8 -0.6 4.8 99 153 403 457 393 466 0.40 # 7319 # 8722 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.256 1_2 - 268 ArsA_ATPase PF02374.10 305 9.2e-08 23.8 0.5 1 1 1.9e-08 1.4e-06 20.0 0.5 9 136 16 132 8 201 0.72 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_2 - 268 Fer4_NifH PF00142.13 273 1.4e-08 26.6 0.5 1 2 1.3e-09 9.1e-08 24.0 0.0 8 64 16 76 11 92 0.84 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_2 - 268 Fer4_NifH PF00142.13 273 1.4e-08 26.6 0.5 2 2 0.012 0.9 1.0 0.1 165 243 171 254 114 260 0.64 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_38 - 675 AAA_16 PF13191.1 185 0.00061 12.2 0.1 1 1 3e-05 0.0022 10.4 0.0 23 51 266 294 257 310 0.81 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_23 PF13476.1 202 0.00055 12.7 5.3 1 2 0.0034 0.24 4.1 0.6 153 201 102 181 8 184 0.60 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_23 PF13476.1 202 0.00055 12.7 5.3 2 2 7.9e-05 0.0057 9.4 0.4 22 156 270 523 267 574 0.50 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_18 PF13238.1 129 0.0005 12.8 2.4 1 1 1.7e-05 0.0012 11.6 0.0 3 23 272 301 271 355 0.76 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 287 AAA_13 PF13166.1 712 0.00052 10.9 19.4 1 1 9.5e-06 0.00069 10.5 19.4 283 470 101 280 73 285 0.58 # 26653 # 27513 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=7bp;gc_cont=0.341 1_8 - 114 SecA_DEAD PF07517.9 266 0.00045 12.0 1.8 1 1 7e-06 0.0005 11.8 1.8 8 53 33 78 25 105 0.81 # 5105 # 5446 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_2 - 268 CbiA PF01656.18 195 1.2e-40 131.4 0.7 1 1 2.1e-42 1.5e-40 131.1 0.7 2 190 11 223 10 228 0.85 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_38 - 675 AAA_14 PF13173.1 128 8.6e-05 14.9 1.7 1 2 0.00024 0.017 7.5 0.0 5 28 270 297 267 433 0.73 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_14 PF13173.1 128 8.6e-05 14.9 1.7 2 2 0.0013 0.097 5.0 0.1 50 102 527 587 467 605 0.70 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_29 PF13555.1 62 2.1e-05 16.5 0.1 1 1 6.7e-07 4.8e-05 15.3 0.1 9 40 256 284 254 291 0.81 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_18 - 236 tRNA-synt_1_2 PF13603.1 185 0.00037 12.3 0.1 1 1 1.3e-05 0.00094 10.9 0.1 15 70 61 117 55 127 0.84 # 12355 # 13062 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_43 - 871 TraG-D_C PF12696.2 128 6.6e-33 105.8 0.3 1 1 9.2e-35 6.6e-33 105.8 0.3 1 125 594 710 594 713 0.89 # 35357 # 37969 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_2 - 268 AAA_31 PF13614.1 157 1.1e-13 43.8 0.0 1 1 3.4e-15 2.5e-13 42.7 0.0 1 155 8 159 8 161 0.79 # 652 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.348 1_38 - 675 AAA_30 PF13604.1 196 0.00045 12.3 0.0 1 1 1.4e-05 0.00099 11.1 0.0 22 51 271 300 262 315 0.88 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 FtsK_SpoIIIE PF01580.13 205 0.00091 11.1 2.0 1 2 0.0077 0.55 2.1 0.2 97 156 98 158 81 209 0.68 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 FtsK_SpoIIIE PF01580.13 205 0.00091 11.1 2.0 2 2 0.00014 0.01 7.8 0.1 23 60 246 289 233 294 0.69 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 Dynamin_N PF00350.18 168 0.0077 8.5 4.1 1 2 0.019 1.4 1.2 0.2 29 75 88 146 65 185 0.60 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 Dynamin_N PF00350.18 168 0.0077 8.5 4.1 2 2 0.00029 0.021 7.1 0.0 3 22 272 291 271 296 0.87 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 ABC_tran PF00005.22 137 8.2e-06 18.6 0.7 1 1 6.2e-07 4.5e-05 16.2 0.2 7 35 263 291 259 377 0.90 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_10 PF12846.2 304 8.1e-59 191.9 0.8 1 2 0.042 3 -0.4 0.0 102 127 105 151 22 210 0.64 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_38 - 675 AAA_10 PF12846.2 304 8.1e-59 191.9 0.8 2 2 1.1e-60 8.1e-59 191.9 0.8 2 302 268 629 267 631 0.92 # 29329 # 31353 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_43 - 871 TrwB_AAD_bind PF10412.4 386 1.5e-18 58.9 0.1 1 2 0.00042 0.03 5.3 0.0 12 131 186 324 176 342 0.73 # 35357 # 37969 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_43 - 871 TrwB_AAD_bind PF10412.4 386 1.5e-18 58.9 0.1 2 2 5.3e-18 3.8e-16 51.0 0.0 215 364 564 710 527 725 0.76 # 35357 # 37969 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_15 - 386 AAA_11 PF13086.1 236 0.00012 14.1 0.9 1 1 2.4e-06 0.00017 13.6 0.9 112 175 210 281 102 283 0.82 # 10051 # 11208 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.332 1_43 - 871 T4SS-DNA_transf PF02534.9 469 7.4e-33 106.1 1.3 1 2 8.4e-14 6.1e-12 37.2 0.0 44 257 189 422 155 428 0.70 # 35357 # 37969 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_43 - 871 T4SS-DNA_transf PF02534.9 469 7.4e-33 106.1 1.3 2 2 6e-23 4.3e-21 67.4 0.3 260 444 549 732 541 744 0.84 # 35357 # 37969 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_21 - 162 tRNA_anti-codon PF01336.20 75 1.1e-05 17.7 0.1 1 1 2.6e-07 1.8e-05 17.0 0.1 27 72 47 95 5 103 0.79 # 14770 # 15255 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bfde4035-090e-4e21-b011-2ca98c3ac675 # Target file: checkm_output/bins/pGCA_000250945.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000250945.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bfde4035-090e-4e21-b011-2ca98c3ac675 checkm_output/bins/pGCA_000250945.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:28 2020 # [ok]