# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 234 UPF0020 PF01170.13 180 6.2e-07 22.3 0.0 1 2 3.8e-05 0.0045 9.7 0.0 101 121 15 37 3 49 0.73 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 UPF0020 PF01170.13 180 6.2e-07 22.3 0.0 2 2 2.4e-05 0.0029 10.3 0.0 29 80 185 225 162 231 0.68 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_32 - 119 Nup35_RRM_2 PF14605.1 53 0.00056 12.9 0.1 1 1 1.9e-05 0.0023 10.9 0.0 8 25 82 100 81 101 0.91 # 20315 # 20671 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_40 - 239 Thymidylate_kin PF02223.12 186 5.5e-08 25.5 0.0 1 2 0.0029 0.34 3.4 0.0 6 25 9 28 9 84 0.91 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_40 - 239 Thymidylate_kin PF02223.12 186 5.5e-08 25.5 0.0 2 2 2.2e-08 2.6e-06 20.0 0.0 102 177 116 194 105 205 0.83 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_85 - 496 Terminase_6 PF03237.10 384 3.1e-08 25.9 0.4 1 1 4.8e-10 5.6e-08 25.0 0.4 51 301 39 332 5 363 0.81 # 65395 # 66882 # 1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.383 1_78 - 281 MipZ PF09140.6 261 1.4e-11 37.0 0.2 1 2 1.4e-09 1.6e-07 23.8 0.1 3 74 4 75 1 97 0.74 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_78 - 281 MipZ PF09140.6 261 1.4e-11 37.0 0.2 2 2 8.9e-06 0.0011 11.2 0.0 76 124 112 158 97 165 0.69 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_78 - 281 YhjQ PF06564.7 244 5.4e-10 32.1 0.0 1 1 7.5e-12 8.9e-10 31.4 0.0 1 151 1 166 1 170 0.76 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_15 - 234 Methyltransf_18 PF12847.2 112 0.0005 13.8 0.0 1 2 0.041 4.9 1.0 0.0 55 84 5 39 2 100 0.64 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 Methyltransf_18 PF12847.2 112 0.0005 13.8 0.0 2 2 5e-05 0.0059 10.4 0.0 11 51 194 230 186 233 0.82 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_46 - 750 UvrD_C_2 PF13538.1 104 1.1e-21 70.1 0.0 1 1 3.1e-23 3.7e-21 68.4 0.0 2 103 599 717 598 718 0.80 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 NB-ARC PF00931.17 287 0.00022 13.2 0.1 1 1 4.3e-06 0.00051 12.1 0.1 18 41 344 367 333 405 0.87 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_53 - 315 AAA_22 PF13401.1 131 0.00053 13.3 0.9 1 1 2.4e-05 0.0014 11.9 0.2 7 24 17 34 11 109 0.76 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_24 - 208 AAA_22 PF13401.1 131 0.0008 12.7 0.0 1 1 1.9e-05 0.0011 12.2 0.0 88 123 81 121 12 130 0.74 # 16326 # 16949 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_78 - 281 ATP_bind_1 PF03029.12 238 0.00043 13.0 0.0 1 1 7.5e-06 0.00088 12.0 0.0 6 112 12 154 10 184 0.74 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_12 - 263 DNA_methylase PF00145.12 335 3.4e-10 32.6 0.8 1 3 1.2e-08 1.4e-06 20.8 0.0 44 82 51 89 36 103 0.85 # 10695 # 11483 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.392 1_12 - 263 DNA_methylase PF00145.12 335 3.4e-10 32.6 0.8 2 3 7.8e-05 0.0092 8.2 0.0 92 110 137 155 128 157 0.90 # 10695 # 11483 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.392 1_12 - 263 DNA_methylase PF00145.12 335 3.4e-10 32.6 0.8 3 3 0.017 2 0.5 0.1 200 244 206 250 168 261 0.62 # 10695 # 11483 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.392 1_78 - 281 SRP54 PF00448.17 196 0.00019 14.0 2.0 1 2 0.0001 0.012 8.2 0.1 11 43 12 44 7 87 0.73 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_78 - 281 SRP54 PF00448.17 196 0.00019 14.0 2.0 2 2 0.00084 0.099 5.2 0.2 56 90 106 139 103 179 0.91 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_15 - 234 N6_N4_Mtase PF01555.13 231 2.8e-39 128.1 0.8 1 1 5.5e-40 6.5e-38 123.6 0.8 1 231 23 224 23 224 0.87 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_40 - 239 AAA_17 PF13207.1 121 1.5e-05 19.0 0.0 1 1 5.2e-07 6.1e-05 17.0 0.0 4 117 4 155 1 206 0.71 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_46 - 750 MobB PF03205.9 140 4.1e-06 19.7 0.7 1 2 1.2e-06 0.00014 14.7 0.3 2 32 347 377 346 385 0.91 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 MobB PF03205.9 140 4.1e-06 19.7 0.7 2 2 0.0088 1 2.2 0.0 16 55 481 520 479 560 0.77 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_78 - 281 ArsA_ATPase PF02374.10 305 4.3e-14 45.3 0.0 1 1 8.7e-16 1e-13 44.1 0.0 9 137 10 143 3 145 0.80 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_46 - 750 PhoH PF02562.11 205 1.1e-06 21.1 0.3 1 2 1.3e-05 0.0016 10.8 0.1 6 36 332 362 330 384 0.85 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 PhoH PF02562.11 205 1.1e-06 21.1 0.3 2 2 0.0001 0.012 7.9 0.0 121 161 423 463 419 494 0.90 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_40 - 239 SKI PF01202.17 158 0.0002 14.4 0.2 1 2 0.015 1.7 1.6 0.1 2 18 9 25 8 31 0.90 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_40 - 239 SKI PF01202.17 158 0.0002 14.4 0.2 2 2 2.3e-05 0.0027 10.7 0.0 86 145 134 196 115 216 0.71 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_78 - 281 VirC1 PF07015.6 231 4.8e-05 15.6 0.2 1 2 2.1e-06 0.00025 13.3 0.1 1 38 1 38 1 82 0.81 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_78 - 281 VirC1 PF07015.6 231 4.8e-05 15.6 0.2 2 2 0.023 2.7 0.1 0.0 81 126 130 175 108 184 0.62 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_78 - 281 Fer4_NifH PF00142.13 273 3e-06 19.7 0.1 1 1 2.6e-08 3e-06 19.7 0.1 8 47 10 49 2 81 0.92 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_46 - 750 Arch_ATPase PF01637.13 234 0.00012 14.9 0.0 1 1 3.4e-06 0.0004 13.2 0.0 16 51 344 376 337 401 0.83 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 AAA_16 PF13191.1 185 7.4e-05 15.9 0.0 1 1 2.5e-06 0.00015 14.9 0.0 23 88 344 409 331 492 0.74 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_53 - 315 AAA_16 PF13191.1 185 0.00034 13.8 0.0 1 1 1.2e-05 0.0007 12.7 0.0 25 88 15 83 5 162 0.64 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_40 - 239 AAA_18 PF13238.1 129 1.3e-07 25.2 0.0 1 1 6.9e-09 4.1e-07 23.5 0.0 1 115 2 156 2 166 0.80 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_56 - 198 AAA_18 PF13238.1 129 0.00022 14.7 0.1 1 1 7.7e-06 0.00046 13.7 0.1 8 123 11 138 10 144 0.67 # 39518 # 40111 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_96 - 324 AAA_13 PF13166.1 712 3.3e-05 15.6 6.7 1 2 0.0087 0.51 1.7 0.0 386 448 21 83 16 89 0.83 # 76454 # 77425 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.366 1_96 - 324 AAA_13 PF13166.1 712 3.3e-05 15.6 6.7 2 2 1.8e-06 0.00011 13.9 4.6 360 439 227 305 190 321 0.66 # 76454 # 77425 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.366 1_1 - 291 AAA_13 PF13166.1 712 0.00012 13.8 1.6 1 2 0.017 1 0.8 0.3 250 264 83 97 79 118 0.75 # 3 # 875 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_1 - 291 AAA_13 PF13166.1 712 0.00012 13.8 1.6 2 2 8.3e-06 0.00049 11.7 0.1 243 285 140 181 125 192 0.82 # 3 # 875 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_78 - 281 CbiA PF01656.18 195 3.8e-33 107.6 0.1 1 1 8.4e-35 5e-33 107.3 0.1 3 179 6 220 4 237 0.79 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_46 - 750 CbiA PF01656.18 195 0.00015 14.3 0.9 1 1 1.1e-05 0.00063 12.3 0.1 2 32 348 378 347 428 0.93 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_49 - 497 KaiC PF06745.8 227 3.5e-06 19.4 0.3 1 1 1.4e-07 8.4e-06 18.1 0.3 6 62 206 261 184 441 0.80 # 32931 # 34421 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.394 1_53 - 315 KaiC PF06745.8 227 1.1e-05 17.8 0.6 1 2 1.3e-06 8e-05 15.0 0.0 21 39 16 34 11 46 0.86 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_53 - 315 KaiC PF06745.8 227 1.1e-05 17.8 0.6 2 2 0.036 2.1 0.5 0.1 97 131 67 98 49 112 0.74 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_46 - 750 AAA_14 PF13173.1 128 0.00026 14.1 0.0 1 1 7.6e-06 0.0009 12.3 0.0 2 103 345 462 344 479 0.61 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_53 - 315 GvpD PF07088.6 484 4.5e-05 15.0 0.1 1 1 7.8e-07 9.2e-05 14.0 0.0 8 75 12 80 6 110 0.74 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_46 - 750 TIGR00084 TIGR00084 192 6.4e-06 18.6 0.9 1 2 3.5e-07 4.1e-05 16.0 0.0 96 124 117 145 109 157 0.83 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 TIGR00084 TIGR00084 192 6.4e-06 18.6 0.9 2 2 0.096 11 -1.8 0.1 83 122 363 402 333 405 0.63 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 AAA_29 PF13555.1 62 1.9e-05 17.3 0.0 1 1 5.3e-07 6.3e-05 15.7 0.0 15 51 337 373 328 381 0.76 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 AAA PF00004.24 132 4.5e-05 16.8 0.0 1 1 2e-06 0.00012 15.4 0.0 1 68 348 431 348 476 0.64 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_53 - 315 AAA PF00004.24 132 0.00079 12.8 0.7 1 1 0.0001 0.0059 10.0 0.2 1 16 17 32 17 43 0.89 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_24 - 208 TK PF00265.13 176 3.7e-45 146.8 0.1 1 1 3.8e-47 4.4e-45 146.5 0.1 2 176 3 191 2 191 0.87 # 16326 # 16949 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_53 - 315 Sigma54_activat PF00158.21 168 3.1e-05 16.6 0.2 1 2 2e-06 0.00023 13.8 0.0 20 40 12 32 4 51 0.85 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_53 - 315 Sigma54_activat PF00158.21 168 3.1e-05 16.6 0.2 2 2 0.082 9.7 -1.2 0.0 96 123 86 113 81 117 0.84 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_15 - 234 N6_Mtase PF02384.11 311 6.7e-06 18.4 0.1 1 2 4.3e-06 0.00051 12.3 0.1 108 181 5 81 1 93 0.66 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 N6_Mtase PF02384.11 311 6.7e-06 18.4 0.1 2 2 0.0012 0.14 4.3 0.0 32 60 171 198 167 223 0.75 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_46 - 750 DUF258 PF03193.11 161 1.8e-05 17.1 0.4 1 1 3.2e-07 3.8e-05 16.1 0.4 23 74 333 384 307 400 0.78 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_78 - 281 AAA_31 PF13614.1 157 3.4e-10 33.2 1.3 1 1 2e-11 1.2e-09 31.4 0.9 9 151 10 165 8 171 0.71 # 58316 # 59158 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_53 - 315 AAA_31 PF13614.1 157 0.00037 13.6 0.6 1 2 0.0027 0.16 5.0 0.0 3 29 17 42 16 49 0.89 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_53 - 315 AAA_31 PF13614.1 157 0.00037 13.6 0.6 2 2 0.0013 0.075 6.1 0.4 102 138 65 104 62 110 0.83 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_46 - 750 NTPase_1 PF03266.10 168 0.00019 14.3 0.2 1 1 6.1e-06 0.00072 12.4 0.2 2 31 348 377 347 382 0.92 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_40 - 239 AAA_33 PF13671.1 143 4.6e-05 16.5 0.0 1 1 3.6e-06 0.00042 13.3 0.0 3 129 3 160 1 181 0.57 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_49 - 497 DnaB_C PF03796.10 259 4.1e-07 22.2 0.4 1 1 6.2e-09 7.3e-07 21.4 0.4 5 145 204 354 200 479 0.69 # 32931 # 34421 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.394 1_15 - 234 Methyltransf_26 PF13659.1 117 1e-11 38.1 0.0 1 2 5e-07 5.9e-05 16.3 0.0 54 109 6 99 2 100 0.66 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 Methyltransf_26 PF13659.1 117 1e-11 38.1 0.0 2 2 4e-08 4.7e-06 19.8 0.0 4 45 188 228 185 232 0.91 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_46 - 750 AAA_30 PF13604.1 196 1e-40 132.6 0.0 1 1 2e-42 2.3e-40 131.4 0.0 2 183 331 511 330 517 0.90 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 AAA_35 PF14516.1 331 0.00051 11.8 0.1 1 1 8.6e-06 0.001 10.8 0.1 21 77 336 391 330 406 0.84 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_40 - 239 dNK PF01712.14 146 2.2e-27 88.9 1.1 1 1 3.1e-29 3.7e-27 88.2 1.1 1 144 56 210 56 212 0.90 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_15 - 234 Cons_hypoth95 PF03602.10 183 4.3e-07 22.6 0.0 1 2 5.4e-06 0.00064 12.3 0.0 100 138 10 44 2 51 0.68 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 Cons_hypoth95 PF03602.10 183 4.3e-07 22.6 0.0 2 2 0.0001 0.012 8.1 0.0 23 89 166 230 154 232 0.72 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_46 - 750 AAA_19 PF13245.1 76 3e-09 29.7 0.3 1 1 6.6e-11 7.8e-09 28.4 0.3 2 76 338 404 337 404 0.88 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_96 - 324 DUF3584 PF12128.3 1201 4.6e-05 14.0 3.9 1 1 5.8e-07 6.8e-05 13.4 3.9 284 372 222 314 210 322 0.77 # 76454 # 77425 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.366 1_46 - 750 Viral_helicase1 PF01443.13 234 1.1e-13 44.3 0.1 1 2 7.1e-07 8.4e-05 15.3 0.1 3 102 350 462 348 468 0.70 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 Viral_helicase1 PF01443.13 234 1.1e-13 44.3 0.1 2 2 4.4e-10 5.2e-08 25.8 0.0 123 233 610 718 587 719 0.62 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 DEAD PF00270.24 169 0.00011 14.8 0.1 1 1 5e-06 0.00059 12.5 0.1 2 42 333 372 332 580 0.72 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 DUF815 PF05673.8 250 0.00015 13.8 0.1 1 1 2.4e-06 0.00029 12.9 0.1 49 82 341 374 310 395 0.81 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 AAA_11 PF13086.1 236 3.6e-11 36.2 0.3 1 2 3e-09 3.5e-07 23.1 0.1 2 70 331 390 330 401 0.94 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_46 - 750 AAA_11 PF13086.1 236 3.6e-11 36.2 0.3 2 2 2.4e-05 0.0029 10.3 0.0 193 230 422 461 405 464 0.88 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_15 - 234 MethyltransfD12 PF02086.10 260 2.7e-06 20.1 0.0 1 2 2.8e-05 0.0033 10.0 0.0 175 200 20 44 3 52 0.76 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 MethyltransfD12 PF02086.10 260 2.7e-06 20.1 0.0 2 2 0.00011 0.013 8.0 0.0 8 48 173 212 171 231 0.70 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_46 - 750 PIF1 PF05970.9 364 5e-11 35.2 0.2 1 1 1.3e-12 1.6e-10 33.5 0.2 3 122 332 441 330 452 0.83 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_40 - 239 RNA_helicase PF00910.17 107 0.00023 14.5 0.5 1 2 9.1e-05 0.011 9.1 0.0 1 29 2 30 2 58 0.75 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_40 - 239 RNA_helicase PF00910.17 107 0.00023 14.5 0.5 2 2 0.0061 0.72 3.3 0.3 40 72 174 206 148 232 0.66 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_46 - 750 UPF0079 PF02367.12 123 7.6e-05 15.5 0.1 1 1 1.8e-06 0.00021 14.1 0.1 13 47 343 378 335 382 0.83 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_54 - 376 tRNA_anti-codon PF01336.20 75 0.00075 12.5 0.6 1 2 5.5e-05 0.0065 9.5 0.0 14 63 101 155 72 170 0.79 # 37734 # 38861 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_54 - 376 tRNA_anti-codon PF01336.20 75 0.00075 12.5 0.6 2 2 0.087 10 -0.7 0.0 14 35 310 333 303 354 0.75 # 37734 # 38861 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_53 - 315 AAA_24 PF13479.1 213 1.7e-21 69.9 4.0 1 1 1.9e-23 2.2e-21 69.5 4.0 1 184 12 200 12 258 0.83 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_49 - 497 AAA_25 PF13481.1 194 8.2e-09 28.2 0.0 1 1 3.2e-10 1.9e-08 27.1 0.0 26 193 211 396 187 397 0.69 # 32931 # 34421 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.394 1_53 - 315 AAA_25 PF13481.1 194 0.00015 14.4 0.1 1 1 6.4e-06 0.00038 13.0 0.1 33 105 14 89 8 129 0.69 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 1_15 - 234 Methyltransf_15 PF09445.5 164 0.00071 12.3 0.0 1 2 0.0028 0.34 3.6 0.0 52 80 5 32 2 44 0.91 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_15 - 234 Methyltransf_15 PF09445.5 164 0.00071 12.3 0.0 2 2 0.00037 0.044 6.5 0.0 2 39 186 223 185 232 0.85 # 12024 # 12725 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_40 - 239 AAA_28 PF13521.1 163 0.00013 15.1 0.0 1 1 5e-06 0.0003 13.9 0.0 9 116 9 117 7 127 0.74 # 23746 # 24462 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_107 - 198 AAA_28 PF13521.1 163 0.00031 13.9 0.0 1 2 0.064 3.8 0.6 0.0 121 149 31 58 15 84 0.58 # 87098 # 87691 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_107 - 198 AAA_28 PF13521.1 163 0.00031 13.9 0.0 2 2 4.1e-05 0.0024 11.0 0.0 108 153 140 189 126 192 0.84 # 87098 # 87691 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_46 - 750 AAA_5 PF07728.9 139 0.00058 12.7 0.1 1 1 3.7e-05 0.0022 10.9 0.1 2 88 348 444 347 449 0.75 # 29659 # 31908 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.392 1_53 - 315 AAA_5 PF07728.9 139 0.0015 11.4 1.1 1 1 7.9e-05 0.0047 9.8 0.2 2 104 17 120 16 169 0.65 # 36764 # 37708 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.429 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bf283e98-e39b-4399-a57c-791ca7220cc3 # Target file: checkm_output/bins/pGCA_000248095.3.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000248095.3.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bf283e98-e39b-4399-a57c-791ca7220cc3 checkm_output/bins/pGCA_000248095.3.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:26 2020 # [ok]