# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_11 - 513 ThiI PF02568.9 197 0.00051 12.5 0.2 1 1 1.1e-05 0.0012 11.3 0.2 3 159 216 378 214 389 0.67 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 2_11 - 513 ATP_bind_3 PF01171.15 182 3.6e-05 16.3 0.0 1 1 6.5e-07 6.9e-05 15.4 0.0 1 154 218 373 218 381 0.60 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_44 - 328 Terminase_6 PF03237.10 384 2.8e-39 127.9 0.2 1 1 3e-41 3.2e-39 127.7 0.2 1 269 65 321 65 327 0.96 # 35636 # 36619 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_51 - 251 MipZ PF09140.6 261 1.1e-10 34.0 0.1 1 1 4.1e-11 4.4e-09 28.7 0.1 2 127 8 152 7 160 0.52 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 2_11 - 513 NAD_synthase PF02540.12 242 6.2e-11 34.6 0.3 1 2 1.7e-12 1.9e-10 33.0 0.1 7 93 205 290 199 305 0.81 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 2_11 - 513 NAD_synthase PF02540.12 242 6.2e-11 34.6 0.3 2 2 0.079 8.5 -1.9 0.0 148 177 360 389 359 419 0.90 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_51 - 251 ArsA_ATPase PF02374.10 305 2.1e-07 23.2 1.1 1 1 7.5e-09 8e-07 21.3 0.2 7 136 13 133 6 137 0.54 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 1_44 - 328 PhoH PF02562.11 205 3.5e-05 16.1 0.0 1 2 1.2e-05 0.0013 11.0 0.0 5 47 45 89 42 129 0.83 # 35636 # 36619 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_44 - 328 PhoH PF02562.11 205 3.5e-05 16.1 0.0 2 2 0.0036 0.38 2.9 0.0 119 152 163 196 155 208 0.85 # 35636 # 36619 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_51 - 251 VirC1 PF07015.6 231 1.8e-05 16.9 1.8 1 2 1.5e-06 0.00016 13.8 0.0 2 43 7 47 6 67 0.78 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 1_51 - 251 VirC1 PF07015.6 231 1.8e-05 16.9 1.8 2 2 0.0053 0.57 2.2 0.1 82 131 122 170 100 214 0.76 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 2_11 - 513 TIGR02432 TIGR02432 189 5e-07 22.5 0.1 1 1 8.5e-09 9.1e-07 21.7 0.1 1 161 218 376 218 383 0.74 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_51 - 251 Fer4_NifH PF00142.13 273 8.3e-06 18.1 0.1 1 1 1.3e-07 1.4e-05 17.3 0.1 8 58 15 63 7 86 0.78 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 2_11 - 513 QueC PF06508.8 210 9.4e-07 21.3 0.1 1 1 2.2e-07 2.3e-05 16.7 0.1 2 113 219 331 218 387 0.61 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_51 - 251 AAA_18 PF13238.1 129 0.00021 14.7 1.2 1 2 5.4e-06 0.00058 13.2 0.2 8 77 17 92 15 142 0.75 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 1_51 - 251 AAA_18 PF13238.1 129 0.00021 14.7 1.2 2 2 0.073 7.8 -0.1 0.1 37 37 210 210 168 243 0.54 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 1_51 - 251 CbiA PF01656.18 195 2.6e-35 114.6 0.5 1 1 5.9e-37 3.1e-35 114.3 0.5 1 175 9 201 9 221 0.81 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 2_18 - 125 CbiA PF01656.18 195 5.8e-10 31.9 0.0 1 1 1.3e-11 7e-10 31.6 0.0 100 175 1 77 1 93 0.73 # 17197 # 17571 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.272 1_18 - 406 Ribosomal_S13 PF00416.17 107 0.00064 13.2 0.5 1 1 6e-06 0.00064 13.2 0.5 31 78 21 68 17 71 0.91 # 15793 # 17010 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 2_11 - 513 PAPS_reduct PF01507.14 174 2.4e-08 26.9 0.0 1 1 3.9e-10 4.2e-08 26.2 0.0 2 160 219 387 218 398 0.67 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 2_11 - 513 Asn_synthase PF00733.16 255 0.0011 11.4 0.0 1 1 1.8e-05 0.0019 10.7 0.0 16 72 215 271 199 296 0.72 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_51 - 251 AAA_31 PF13614.1 157 2.8e-16 52.8 0.7 1 1 4.3e-18 4.5e-16 52.1 0.7 1 154 7 159 7 162 0.82 # 41134 # 41886 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.256 2_13 - 135 Ribosomal_L13 PF00572.13 128 0.00044 13.3 0.0 1 1 6.5e-06 0.00069 12.7 0.0 46 109 27 90 25 91 0.73 # 12259 # 12663 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.358 1_74 - 63 Methyltransf_10 PF05971.7 299 0.00019 13.6 0.1 1 1 1.8e-06 0.00019 13.6 0.1 180 221 15 53 4 60 0.76 # 56291 # 56479 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.275 2_11 - 513 tRNA_Me_trans PF03054.11 356 7.2e-05 14.4 0.0 1 1 1e-06 0.00011 13.8 0.0 1 34 217 251 217 284 0.76 # 9887 # 11425 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_56 - 189 Nup35_RRM PF05172.8 101 3.4e-05 16.6 0.1 1 1 5.2e-07 5.6e-05 15.9 0.1 8 90 8 94 2 104 0.78 # 44244 # 44810 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 1_44 - 328 AAA_28 PF13521.1 163 0.0012 11.8 0.2 1 2 0.0026 0.28 4.1 0.1 1 18 63 80 63 91 0.88 # 35636 # 36619 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_44 - 328 AAA_28 PF13521.1 163 0.0012 11.8 0.2 2 2 0.00088 0.094 5.7 0.0 70 111 188 228 166 249 0.85 # 35636 # 36619 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.285 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b24d9739-847f-428a-a9e5-e108b7c29ee9 # Target file: checkm_output/bins/pGCA_000239475.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000239475.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b24d9739-847f-428a-a9e5-e108b7c29ee9 checkm_output/bins/pGCA_000239475.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:25 2020 # [ok]