# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_13 - 588 cobW PF02492.14 178 0.00028 12.9 0.1 1 1 1.5e-05 0.0012 10.9 0.1 3 169 223 392 221 398 0.64 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 3_1 - 276 MipZ PF09140.6 261 1.5e-11 36.4 0.0 1 2 7.5e-10 2.9e-08 25.6 0.0 3 72 5 74 3 97 0.87 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 3_1 - 276 MipZ PF09140.6 261 1.5e-11 36.4 0.0 2 2 0.0001 0.0038 8.8 0.0 74 121 106 151 82 159 0.71 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 4_5 - 298 MipZ PF09140.6 261 1.8e-09 29.5 0.5 1 2 3.7e-06 0.00014 13.5 0.1 2 41 29 69 28 77 0.86 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 4_5 - 298 MipZ PF09140.6 261 1.8e-09 29.5 0.5 2 2 2.3e-06 8.8e-05 14.2 0.0 61 128 111 179 98 196 0.86 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 3_1 - 276 YhjQ PF06564.7 244 2.2e-13 42.6 0.0 1 1 7.8e-15 3e-13 42.2 0.0 4 151 5 162 2 178 0.82 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 4_5 - 298 YhjQ PF06564.7 244 2.6e-07 22.7 0.1 1 1 6.3e-08 2.4e-06 19.6 0.1 9 176 35 206 28 211 0.72 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_12 - 445 3HCDH_N PF02737.13 180 2e-06 20.1 0.6 1 1 3.9e-08 3e-06 19.5 0.0 2 54 169 221 168 258 0.76 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 GIDA PF01134.17 392 2.6e-05 15.7 10.7 1 3 2.3e-05 0.0018 9.7 1.4 2 64 9 73 8 150 0.74 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 GIDA PF01134.17 392 2.6e-05 15.7 10.7 2 3 8e-05 0.0062 7.9 1.5 2 30 169 197 168 207 0.83 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 GIDA PF01134.17 392 2.6e-05 15.7 10.7 3 3 0.034 2.6 -0.8 0.0 320 363 261 300 197 302 0.61 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Pyr_redox_2 PF07992.9 201 9.5e-34 109.5 0.0 1 1 2.3e-35 1.8e-33 108.6 0.0 2 199 9 304 8 306 0.91 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_13 - 588 NB-ARC PF00931.17 287 8.1e-05 14.1 0.1 1 1 2e-06 0.00015 13.2 0.1 5 42 206 243 202 304 0.87 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 1_12 - 445 NmrA PF05368.8 233 5.5e-05 15.0 0.1 1 1 1.2e-06 9e-05 14.3 0.1 2 53 170 231 169 253 0.84 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_13 - 588 AAA_22 PF13401.1 131 2.4e-07 23.5 0.0 1 1 2.3e-08 8.7e-07 21.7 0.0 2 99 218 312 216 363 0.78 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 3_15 - 550 AAA_22 PF13401.1 131 0.00069 12.3 0.0 1 1 9.9e-05 0.0038 9.9 0.0 7 69 288 368 282 391 0.56 # 14637 # 16286 # -1 # ID=3_15;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.400 2_19 - 315 YjeF_N PF03853.10 169 2.7e-05 16.4 0.2 1 1 5.9e-07 4.5e-05 15.6 0.2 8 57 131 177 127 235 0.80 # 22363 # 23307 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 3_13 - 455 DNA_methylase PF00145.12 335 1.5e-80 263.3 0.0 1 1 2.7e-82 2e-80 262.8 0.0 2 333 103 430 102 432 0.82 # 12003 # 13367 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_12 - 445 NAD_binding_7 PF13241.1 103 0.0002 14.1 0.0 1 2 0.033 2.5 1.0 0.0 7 39 6 38 1 107 0.78 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 NAD_binding_7 PF13241.1 103 0.0002 14.1 0.0 2 2 3.1e-05 0.0024 10.7 0.0 8 55 167 211 159 257 0.73 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_19 - 315 ADH_zinc_N_2 PF13602.1 127 1.7e-22 73.2 0.3 1 1 5.6e-24 4.3e-22 71.9 0.0 1 127 190 308 190 308 0.82 # 22363 # 23307 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 2_13 - 588 Miro PF08477.8 119 0.00014 14.9 0.1 1 1 5.3e-05 0.0041 10.2 0.0 4 49 225 270 222 370 0.68 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 2_19 - 315 ADH_zinc_N PF00107.21 130 6.9e-17 53.8 0.1 1 1 1.5e-18 1.2e-16 53.1 0.1 1 92 159 240 159 273 0.87 # 22363 # 23307 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 3_1 - 276 ArsA_ATPase PF02374.10 305 1.3e-10 33.3 0.1 1 1 3.1e-11 1.2e-09 30.1 0.1 9 137 11 139 3 143 0.53 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 4_5 - 298 ArsA_ATPase PF02374.10 305 9.3e-09 27.2 0.0 1 1 4.8e-10 1.8e-08 26.2 0.0 9 137 36 160 28 162 0.73 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 2_13 - 588 T2SE PF00437.15 272 8.4e-06 17.3 0.1 1 1 2.4e-07 1.9e-05 16.2 0.0 100 152 192 244 186 273 0.91 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 1_30 - 91 Zeta_toxin PF06414.7 201 0.00035 12.2 0.0 1 1 6.4e-05 0.0049 8.5 0.0 16 56 5 43 2 89 0.66 # 26230 # 26502 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_12 - 445 NAD_binding_8 PF13450.1 68 9.9e-06 18.1 2.2 1 2 0.00011 0.0084 8.7 0.1 2 52 12 62 12 73 0.80 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 NAD_binding_8 PF13450.1 68 9.9e-06 18.1 2.2 2 2 0.0002 0.016 7.9 0.2 1 30 171 200 171 201 0.94 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 F420_oxidored PF03807.12 96 0.00029 13.8 1.1 1 1 2.3e-05 0.0018 11.3 0.2 2 52 169 215 168 223 0.88 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_binding_3 PF01494.14 356 0.00052 11.6 4.6 1 3 0.062 4.8 -1.4 0.1 2 32 7 37 6 54 0.91 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_binding_3 PF01494.14 356 0.00052 11.6 4.6 2 3 6.3e-05 0.0048 8.4 0.3 4 40 169 205 167 212 0.89 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_binding_3 PF01494.14 356 0.00052 11.6 4.6 3 3 0.001 0.077 4.5 0.0 108 153 205 249 203 262 0.85 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 276 VirC1 PF07015.6 231 0.00013 13.6 0.4 1 2 7.2e-06 0.00055 11.6 0.1 4 39 5 40 2 59 0.85 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 3_1 - 276 VirC1 PF07015.6 231 0.00013 13.6 0.4 2 2 0.028 2.1 -0.2 0.0 117 172 141 197 116 231 0.72 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 3_1 - 276 Fer4_NifH PF00142.13 273 5.6e-07 21.5 0.8 1 1 4.2e-08 1.6e-06 20.0 0.1 8 52 11 55 6 81 0.91 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 4_5 - 298 Fer4_NifH PF00142.13 273 0.00012 13.8 0.6 1 1 1e-05 0.0004 12.1 0.2 8 59 36 87 27 107 0.79 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 2_13 - 588 AAA_16 PF13191.1 185 6.2e-06 18.8 0.0 1 1 1.4e-07 1.1e-05 18.0 0.0 18 63 214 259 201 367 0.84 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 3_1 - 276 CbiA PF01656.18 195 4e-33 107.0 0.2 1 1 1.3e-34 5e-33 106.7 0.2 2 192 6 231 5 264 0.81 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 4_5 - 298 CbiA PF01656.18 195 6.6e-31 99.7 0.4 1 1 2.2e-32 8.6e-31 99.4 0.4 2 193 31 250 30 252 0.80 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 2_13 - 588 AAA_14 PF13173.1 128 8.4e-05 15.0 0.0 1 1 3e-06 0.00023 13.6 0.0 2 43 220 266 219 355 0.64 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 1_12 - 445 HI0933_like PF03486.9 409 6.9e-09 27.1 4.9 1 4 0.0018 0.14 3.0 0.7 2 33 8 39 7 43 0.91 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 HI0933_like PF03486.9 409 6.9e-09 27.1 4.9 2 4 0.0079 0.61 0.9 0.0 143 163 120 139 107 144 0.85 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 HI0933_like PF03486.9 409 6.9e-09 27.1 4.9 3 4 2e-06 0.00016 12.8 0.2 2 39 168 205 167 208 0.95 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 HI0933_like PF03486.9 409 6.9e-09 27.1 4.9 4 4 3.1e-05 0.0024 8.8 0.0 112 164 210 261 206 292 0.83 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 91 AAA_29 PF13555.1 62 0.00027 13.0 0.0 1 1 6.2e-06 0.00048 12.2 0.0 25 51 7 33 1 39 0.80 # 26230 # 26502 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_12 - 445 FAD_binding_2 PF00890.19 417 1.9e-06 19.4 7.2 1 3 4.5e-05 0.0035 8.7 0.5 1 32 8 39 8 47 0.92 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_binding_2 PF00890.19 417 1.9e-06 19.4 7.2 2 3 0.00034 0.026 5.8 0.4 2 28 169 195 168 203 0.92 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_binding_2 PF00890.19 417 1.9e-06 19.4 7.2 3 3 0.00022 0.017 6.4 0.0 369 402 275 302 272 306 0.91 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_13 - 588 AAA PF00004.24 132 6.1e-05 15.8 0.0 1 1 6.5e-06 0.00025 13.8 0.0 3 74 225 316 223 349 0.66 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 3_15 - 550 AAA PF00004.24 132 0.00017 14.4 0.0 1 1 8.9e-06 0.00034 13.4 0.0 2 125 289 432 288 438 0.72 # 14637 # 16286 # -1 # ID=3_15;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.400 1_12 - 445 Thi4 PF01946.12 230 1.2e-05 17.0 0.2 1 2 3.6e-05 0.0028 9.3 0.0 15 49 4 38 1 61 0.87 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Thi4 PF01946.12 230 1.2e-05 17.0 0.2 2 2 0.00085 0.065 4.8 0.0 14 48 163 197 151 201 0.80 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Pyr_redox_3 PF13738.1 203 1.2e-13 44.1 3.7 1 3 2.8e-09 2.2e-07 23.6 2.0 4 197 13 196 10 202 0.72 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Pyr_redox_3 PF13738.1 203 1.2e-13 44.1 3.7 2 3 1.1e-05 0.00081 12.0 0.4 1 35 170 203 170 214 0.80 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Pyr_redox_3 PF13738.1 203 1.2e-13 44.1 3.7 3 3 1.9e-07 1.5e-05 17.7 0.0 85 158 207 286 197 308 0.75 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 3_1 - 276 AAA_31 PF13614.1 157 9.5e-15 47.4 0.6 1 1 6.5e-16 2.5e-14 46.0 0.6 9 155 11 165 4 167 0.80 # 46 # 873 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=12bp;gc_cont=0.285 4_5 - 298 AAA_31 PF13614.1 157 1.1e-09 31.0 0.5 1 1 1.4e-10 5.6e-09 28.7 0.5 3 154 30 185 28 187 0.73 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_30 - 91 AAA_33 PF13671.1 143 1.1e-06 21.2 0.0 1 1 1.6e-08 1.2e-06 21.0 0.0 2 80 8 82 7 88 0.73 # 26230 # 26502 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_12 - 445 NAD_Gly3P_dh_N PF01210.18 157 0.00031 13.0 0.1 1 1 9.7e-06 0.00075 11.8 0.1 2 41 169 208 168 217 0.93 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 2-Hacid_dh_C PF02826.14 178 2e-06 19.6 0.1 1 2 0.016 1.2 0.7 0.1 35 50 28 43 19 55 0.86 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 2-Hacid_dh_C PF02826.14 178 2e-06 19.6 0.1 2 2 3.1e-07 2.4e-05 16.1 0.0 37 78 167 208 137 220 0.79 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 5_1 - 84 AAA_30 PF13604.1 196 0.00017 13.8 0.0 1 1 4.4e-06 0.00017 13.7 0.0 47 88 11 52 3 74 0.83 # 43 # 294 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.460 2_13 - 588 AAA_30 PF13604.1 196 0.00034 12.8 0.2 1 1 2.8e-05 0.0011 11.1 0.2 18 62 220 272 210 399 0.65 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 1_12 - 445 ApbA PF02558.11 151 4.5e-06 18.7 0.0 1 1 1.5e-07 1.2e-05 17.4 0.0 1 57 169 227 169 256 0.82 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Lycopene_cycl PF05834.7 374 0.0035 8.8 3.7 1 2 0.003 0.23 2.8 0.3 2 29 169 196 168 210 0.77 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Lycopene_cycl PF05834.7 374 0.0035 8.8 3.7 2 2 0.00022 0.017 6.5 0.0 92 142 216 263 199 289 0.79 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 91 ABC_tran PF00005.22 137 0.00044 13.1 0.0 1 1 7.2e-06 0.00055 12.8 0.0 14 63 8 64 2 88 0.63 # 26230 # 26502 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 1_12 - 445 K_oxygenase PF13434.1 341 7.4e-07 20.8 0.1 1 2 2.9e-07 2.2e-05 16.0 0.0 139 236 122 210 104 215 0.70 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 K_oxygenase PF13434.1 341 7.4e-07 20.8 0.1 2 2 0.001 0.077 4.3 0.0 94 160 203 264 193 268 0.64 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_16 - 618 Cons_hypoth95 PF03602.10 183 2.3e-06 19.6 0.1 1 3 0.012 0.93 1.4 0.0 36 56 18 40 8 41 0.74 # 17412 # 19265 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.310 2_16 - 618 Cons_hypoth95 PF03602.10 183 2.3e-06 19.6 0.1 2 3 5.6e-05 0.0043 9.0 0.1 113 129 204 220 181 234 0.74 # 17412 # 19265 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.310 2_16 - 618 Cons_hypoth95 PF03602.10 183 2.3e-06 19.6 0.1 3 3 0.0012 0.092 4.6 0.0 111 126 516 531 486 566 0.78 # 17412 # 19265 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.310 1_12 - 445 UDPG_MGDP_dh_N PF03721.9 185 1.7e-05 16.8 0.6 1 1 3.3e-07 2.5e-05 16.2 0.1 2 46 168 212 167 232 0.89 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_10 - 921 RuvB_N PF05496.7 234 0.0002 13.0 0.1 1 2 0.00078 0.06 4.9 0.1 53 75 311 333 294 338 0.85 # 7554 # 10316 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_10 - 921 RuvB_N PF05496.7 234 0.0002 13.0 0.1 2 2 0.00046 0.036 5.6 0.0 102 126 452 476 444 497 0.82 # 7554 # 10316 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_10 - 921 AAA_19 PF13245.1 76 0.00027 13.2 0.0 1 1 1.2e-05 0.00091 11.6 0.0 4 41 303 339 300 366 0.81 # 7554 # 10316 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_12 - 445 NAD_binding_10 PF13460.1 183 2e-06 20.4 0.0 1 1 5e-08 3.9e-06 19.5 0.0 1 50 169 219 169 238 0.85 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_oxidored PF12831.2 428 0.0029 9.2 4.7 1 3 0.0021 0.16 3.4 0.0 1 38 8 44 8 89 0.87 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_oxidored PF12831.2 428 0.0029 9.2 4.7 2 3 0.016 1.2 0.5 0.5 2 31 169 198 168 202 0.86 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 FAD_oxidored PF12831.2 428 0.0029 9.2 4.7 3 3 0.00034 0.026 6.0 0.6 82 147 201 260 177 261 0.76 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 DAO PF01266.19 358 4.8e-12 37.9 1.6 1 4 0.0045 0.35 2.2 0.0 15 35 22 42 8 52 0.85 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 DAO PF01266.19 358 4.8e-12 37.9 1.6 2 4 0.0018 0.14 3.5 0.0 180 202 119 141 101 153 0.79 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 DAO PF01266.19 358 4.8e-12 37.9 1.6 3 4 8.9e-06 0.00069 11.1 0.4 2 31 169 198 168 202 0.91 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 DAO PF01266.19 358 4.8e-12 37.9 1.6 4 4 1.6e-07 1.2e-05 16.8 0.0 148 200 208 260 206 264 0.93 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_13 - 588 ResIII PF04851.10 184 1.4e-05 17.5 3.2 1 2 8.7e-06 0.00067 12.0 0.2 3 65 193 277 191 299 0.77 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 2_13 - 588 ResIII PF04851.10 184 1.4e-05 17.5 3.2 2 2 0.0011 0.086 5.2 0.2 142 157 296 311 253 322 0.74 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 2_13 - 588 Viral_helicase1 PF01443.13 234 0.0002 13.4 0.0 1 1 1.6e-05 0.0006 11.9 0.0 3 76 225 314 223 323 0.76 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 3_15 - 550 Viral_helicase1 PF01443.13 234 0.0008 11.5 0.0 1 1 3.7e-05 0.0014 10.7 0.0 2 76 289 371 288 383 0.74 # 14637 # 16286 # -1 # ID=3_15;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.400 2_13 - 588 DUF2075 PF09848.4 352 7.2e-79 257.7 1.0 1 1 1.3e-80 9.9e-79 257.3 1.0 3 351 222 576 220 577 0.93 # 12196 # 13959 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.384 1_12 - 445 NAD_binding_9 PF13454.1 156 9.3e-05 14.8 2.1 1 2 0.0035 0.27 3.5 0.0 137 154 122 139 103 141 0.81 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 NAD_binding_9 PF13454.1 156 9.3e-05 14.8 2.1 2 2 3.6e-05 0.0028 10.0 0.2 89 154 199 260 178 262 0.79 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_10 - 921 DEAD PF00270.24 169 1.2e-12 40.1 0.0 1 1 8e-13 6.2e-11 34.6 0.0 12 165 306 495 292 499 0.68 # 7554 # 10316 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_12 - 445 Pyr_redox PF00070.22 80 1.4e-22 72.5 1.4 1 2 0.001 0.079 6.0 0.2 3 31 10 38 8 45 0.91 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 445 Pyr_redox PF00070.22 80 1.4e-22 72.5 1.4 2 2 4.9e-22 3.8e-20 64.7 0.1 1 72 168 239 168 247 0.94 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 4_5 - 298 ParA PF10609.4 81 0.00012 14.6 0.1 1 1 3.9e-06 0.0003 13.2 0.1 2 63 151 216 150 220 0.79 # 3058 # 3951 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_23 - 48 DapB_N PF01113.15 124 4.4e-05 16.0 0.2 1 1 5.7e-07 4.4e-05 16.0 0.2 1 27 1 27 1 42 0.83 # 19752 # 19895 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 2_16 - 618 MethyltransfD12 PF02086.10 260 6.9e-61 198.4 18.5 1 2 1.4e-39 1.1e-37 122.4 1.6 1 255 3 289 3 294 0.90 # 17412 # 19265 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.310 2_16 - 618 MethyltransfD12 PF02086.10 260 6.9e-61 198.4 18.5 2 2 1.6e-27 1.3e-25 82.9 7.8 1 252 348 597 348 603 0.85 # 17412 # 19265 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.310 1_12 - 445 AlaDh_PNT_C PF01262.16 168 1.6e-06 20.3 0.0 1 1 8.6e-08 3.3e-06 19.3 0.0 14 77 160 223 154 241 0.86 # 10902 # 12236 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.449 2_19 - 315 AlaDh_PNT_C PF01262.16 168 2.1e-05 16.7 0.3 1 1 1.2e-06 4.7e-05 15.5 0.1 26 49 155 178 142 214 0.83 # 22363 # 23307 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_7 - 360 TIGR00922 TIGR00922 172 0.00013 14.0 1.4 1 2 0.092 7.1 -1.3 0.0 69 91 85 105 54 149 0.63 # 4150 # 5229 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 1_7 - 360 TIGR00922 TIGR00922 172 0.00013 14.0 1.4 2 2 2.8e-06 0.00022 13.3 0.3 15 146 219 356 212 358 0.70 # 4150 # 5229 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 3_15 - 550 AAA_5 PF07728.9 139 9.4e-19 60.1 0.0 1 1 2.9e-20 2.2e-18 58.9 0.0 3 139 289 431 287 431 0.90 # 14637 # 16286 # -1 # ID=3_15;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.400 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/718ecf4e-dbf9-40fc-8702-b6bc0807b360 # Target file: checkm_output/bins/pGCA_000225325.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000225325.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/718ecf4e-dbf9-40fc-8702-b6bc0807b360 checkm_output/bins/pGCA_000225325.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:20 2020 # [ok]