# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 831 Mg_chelatase PF01078.16 207 0.00031 13.1 0.0 1 1 5.7e-06 0.00069 12.0 0.0 11 46 452 487 449 513 0.88 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 2_35 - 82 Seryl_tRNA_N PF02403.17 108 0.0012 12.1 8.7 1 1 1.9e-05 0.0023 11.2 8.7 62 103 9 54 3 59 0.80 # 26258 # 26503 # -1 # ID=2_35;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_22 - 717 ABC_ATPase PF09818.4 448 1.5e-06 20.2 0.0 1 1 2.4e-08 2.9e-06 19.2 0.0 298 377 594 674 588 689 0.89 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_10 - 261 MipZ PF09140.6 261 1.6e-13 43.5 0.3 1 2 2.2e-07 1.3e-05 17.5 0.0 2 43 4 46 3 58 0.86 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_10 - 261 MipZ PF09140.6 261 1.6e-13 43.5 0.3 2 2 1.6e-09 9.9e-08 24.5 0.0 58 150 80 169 61 215 0.82 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 2_1 - 310 MipZ PF09140.6 261 3.3e-07 22.8 0.0 1 2 0.005 0.3 3.2 0.0 2 46 11 56 10 81 0.78 # 132 # 1061 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.328 2_1 - 310 MipZ PF09140.6 261 3.3e-07 22.8 0.0 2 2 2.2e-07 1.3e-05 17.5 0.0 68 125 100 157 83 161 0.86 # 132 # 1061 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_10 - 261 YhjQ PF06564.7 244 4.4e-10 32.5 0.0 1 1 1.1e-11 6.8e-10 31.8 0.0 7 149 8 149 2 163 0.81 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 2_1 - 310 YhjQ PF06564.7 244 3.9e-05 16.3 0.0 1 1 9.4e-07 5.8e-05 15.7 0.0 3 145 11 158 9 164 0.67 # 132 # 1061 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_44 - 162 SSB PF00436.20 104 7.9e-40 128.2 1.0 1 1 2.9e-41 1.2e-39 127.6 1.0 1 104 2 103 2 103 0.98 # 41271 # 41756 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_18 - 151 SSB PF00436.20 104 6e-38 122.1 0.8 1 1 1.9e-39 7.7e-38 121.8 0.8 1 104 2 103 2 103 0.98 # 11957 # 12409 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_32 - 139 SSB PF00436.20 104 2e-32 104.4 0.1 1 1 6.7e-34 2.7e-32 104.0 0.1 2 104 2 102 1 102 0.96 # 28317 # 28733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.376 1_38 - 753 DUF87 PF01935.12 229 3.7e-11 36.4 4.6 1 1 1.8e-12 5.4e-11 35.9 0.1 11 154 222 408 213 458 0.67 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 2_38 - 797 DUF87 PF01935.12 229 2.3e-06 20.7 0.0 1 1 7.6e-08 2.3e-06 20.7 0.0 16 84 450 517 437 542 0.76 # 29767 # 32157 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_41 - 831 DUF87 PF01935.12 229 0.00018 14.6 0.4 1 1 2.4e-05 0.00072 12.6 0.0 27 131 467 569 463 698 0.65 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 717 DUF87 PF01935.12 229 0.00026 14.0 0.4 1 1 3.6e-05 0.0011 12.0 0.2 25 45 510 530 508 538 0.91 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_22 - 717 AAA_22 PF13401.1 131 1e-06 22.1 2.7 1 1 1.7e-07 7.1e-06 19.4 1.5 7 114 511 671 507 696 0.75 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_41 - 831 AAA_22 PF13401.1 131 1.4e-06 21.7 0.0 1 1 1.7e-07 7e-06 19.4 0.0 4 69 463 531 459 625 0.62 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_38 - 753 AAA_22 PF13401.1 131 0.0001 15.7 0.0 1 1 1.3e-05 0.00054 13.3 0.0 5 68 234 292 232 358 0.79 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_22 - 717 AAA_17 PF13207.1 121 7.8e-07 23.2 0.2 1 1 3.8e-08 2.3e-06 21.6 0.2 1 24 510 537 510 645 0.86 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_38 - 753 AAA_17 PF13207.1 121 1.7e-05 18.8 0.5 1 1 1.4e-06 8.7e-05 16.5 0.0 7 63 241 296 236 513 0.83 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_22 - 717 AAA_21 PF13304.1 303 1.5e-09 31.4 1.7 1 2 2.5e-05 0.0031 10.6 0.0 3 60 512 579 511 592 0.72 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_22 - 717 AAA_21 PF13304.1 303 1.5e-09 31.4 1.7 2 2 9.4e-08 1.1e-05 18.6 0.7 236 297 619 675 598 681 0.86 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_22 - 717 MobB PF03205.9 140 0.00019 14.3 0.0 1 1 1.6e-05 0.00096 12.1 0.0 3 24 511 532 510 550 0.87 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_38 - 753 MobB PF03205.9 140 0.0015 11.4 1.2 1 1 4.2e-05 0.0026 10.7 0.0 3 32 236 265 234 273 0.85 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_10 - 261 ArsA_ATPase PF02374.10 305 8.6e-09 28.0 1.2 1 1 2.3e-09 2.8e-07 23.0 1.2 9 137 11 128 3 240 0.63 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_38 - 753 T2SE PF00437.15 272 0.00014 14.0 0.0 1 1 4.8e-06 0.00029 12.9 0.0 127 161 232 266 200 277 0.84 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_22 - 717 T2SE PF00437.15 272 0.00051 12.1 0.1 1 1 2.3e-05 0.0014 10.7 0.0 102 155 482 535 471 540 0.89 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_1 - 310 Methyltransf_24 PF13578.1 106 0.00076 13.5 0.0 1 1 1.5e-05 0.0018 12.3 0.0 27 95 91 156 43 159 0.69 # 132 # 1061 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_22 - 717 SMC_N PF02463.14 220 0.00012 14.6 1.5 1 1 2.2e-05 0.0026 10.1 0.9 103 209 592 687 490 695 0.56 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_10 - 261 Fer4_NifH PF00142.13 273 5.4e-09 28.8 0.5 1 2 1.2e-09 1.5e-07 24.0 0.0 7 68 10 76 3 90 0.83 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_10 - 261 Fer4_NifH PF00142.13 273 5.4e-09 28.8 0.5 2 2 0.0024 0.29 3.4 0.1 153 247 154 253 111 258 0.74 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 717 AAA_16 PF13191.1 185 6.1e-06 19.5 0.0 1 1 4.5e-07 2.7e-05 17.4 0.0 27 72 511 565 496 673 0.62 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_41 - 831 AAA_16 PF13191.1 185 0.00083 12.5 0.0 1 1 3.8e-05 0.0023 11.1 0.0 25 44 464 483 452 497 0.87 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 717 AAA_18 PF13238.1 129 2.5e-05 17.8 0.0 1 1 1.1e-06 6.6e-05 16.4 0.0 1 19 511 529 511 558 0.83 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_38 - 753 AAA_18 PF13238.1 129 0.0044 10.5 0.0 1 1 7.3e-05 0.0044 10.5 0.0 5 23 240 269 236 330 0.70 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 2_35 - 82 AAA_13 PF13166.1 712 1.7e-05 16.6 6.0 1 1 3e-07 1.8e-05 16.5 6.0 410 458 4 52 2 71 0.88 # 26258 # 26503 # -1 # ID=2_35;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_34 - 203 AAA_13 PF13166.1 712 0.0086 7.7 17.9 1 1 0.00022 0.014 7.0 18.0 343 456 86 192 37 196 0.76 # 25666 # 26274 # -1 # ID=2_34;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.340 1_10 - 261 CbiA PF01656.18 195 5.6e-40 130.0 0.4 1 1 1.1e-41 6.7e-40 129.7 0.4 1 175 5 202 5 223 0.84 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 2_1 - 310 CbiA PF01656.18 195 1e-16 54.0 0.0 1 1 2.4e-18 1.5e-16 53.5 0.0 1 188 12 229 12 236 0.73 # 132 # 1061 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_41 - 831 AAA_14 PF13173.1 128 0.0012 12.0 3.9 1 1 8.7e-05 0.011 8.9 0.1 3 42 464 504 462 625 0.78 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 2_5 - 443 TIGR03594 TIGR03594 432 0.00026 12.9 0.2 1 2 0.073 8.9 -2.0 0.0 392 423 87 118 85 125 0.80 # 2661 # 3989 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 2_5 - 443 TIGR03594 TIGR03594 432 0.00026 12.9 0.2 2 2 5.1e-06 0.00062 11.7 0.0 350 424 334 408 281 411 0.90 # 2661 # 3989 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_22 - 717 AAA_29 PF13555.1 62 7.3e-05 15.5 0.0 1 1 2.9e-06 0.00018 14.3 0.0 17 39 503 524 496 537 0.83 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_41 - 831 AAA_29 PF13555.1 62 0.00054 12.7 0.2 1 1 3.7e-05 0.0022 10.7 0.1 22 40 463 480 454 489 0.87 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_27 - 145 Methyltransf_5 PF01795.14 310 0.00013 14.5 0.0 1 1 1.3e-06 0.00016 14.2 0.0 170 225 12 67 1 74 0.83 # 24933 # 25367 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 717 DUF258 PF03193.11 161 0.00027 13.3 0.0 1 1 4.4e-06 0.00054 12.4 0.0 17 57 488 530 474 547 0.76 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_32 - 610 TraG-D_C PF12696.2 128 7.8e-34 109.5 0.0 1 1 2.4e-35 1.4e-33 108.7 0.0 1 124 414 529 414 532 0.91 # 23193 # 25022 # -1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_38 - 753 TraG-D_C PF12696.2 128 4e-14 45.8 0.0 1 1 6.6e-16 4e-14 45.8 0.0 2 127 592 717 591 718 0.84 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_10 - 261 AAA_31 PF13614.1 157 8.1e-15 48.3 0.1 1 1 4e-16 2.4e-14 46.7 0.0 1 155 3 154 3 156 0.82 # 8770 # 9552 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.344 2_1 - 310 AAA_31 PF13614.1 157 6.3e-05 16.1 0.1 1 1 2.8e-06 0.00017 14.7 0.1 108 145 118 157 10 168 0.65 # 132 # 1061 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_22 - 717 AAA_33 PF13671.1 143 0.00011 15.3 0.2 1 1 1.7e-06 0.00021 14.4 0.2 2 20 511 529 511 644 0.80 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_38 - 753 AAA_30 PF13604.1 196 0.00061 12.6 0.3 1 1 2.6e-05 0.0032 10.2 0.0 20 142 235 368 229 372 0.69 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 FtsK_SpoIIIE PF01580.13 205 6.3e-07 22.2 0.0 1 1 2.3e-08 1.4e-06 21.1 0.0 22 89 216 282 205 299 0.82 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_41 - 831 FtsK_SpoIIIE PF01580.13 205 0.00094 11.9 0.0 1 1 4e-05 0.0024 10.5 0.0 27 79 452 500 435 521 0.78 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 717 ABC_tran PF00005.22 137 9.2e-36 116.4 0.0 1 1 3.3e-37 2e-35 115.3 0.0 1 137 498 648 498 648 0.88 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_41 - 831 ABC_tran PF00005.22 137 0.00098 12.6 0.1 1 1 8.6e-05 0.0052 10.3 0.0 13 74 465 527 456 581 0.60 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_41 - 831 AAA_19 PF13245.1 76 9e-05 15.4 0.0 1 1 1.5e-06 0.00019 14.4 0.0 9 55 462 504 454 522 0.71 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 2_38 - 797 AAA_10 PF12846.2 304 3.3e-44 144.7 1.6 1 2 0.061 1.5 1.3 0.1 75 142 99 186 66 357 0.75 # 29767 # 32157 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 2_38 - 797 AAA_10 PF12846.2 304 3.3e-44 144.7 1.6 2 2 5.6e-45 1.4e-43 142.6 0.2 2 304 459 753 458 753 0.88 # 29767 # 32157 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_41 - 831 AAA_10 PF12846.2 304 4.1e-36 118.1 0.3 1 1 3e-37 7.3e-36 117.3 0.3 1 303 463 769 463 770 0.87 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_38 - 753 AAA_10 PF12846.2 304 5.6e-19 61.8 0.7 1 1 6.1e-20 1.5e-18 60.4 0.7 1 297 233 665 233 670 0.81 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 2_32 - 610 AAA_10 PF12846.2 304 1e-08 28.1 0.2 1 1 6.6e-10 1.6e-08 27.5 0.2 1 295 143 487 143 494 0.65 # 23193 # 25022 # -1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_22 - 717 AAA_10 PF12846.2 304 0.00023 13.8 0.0 1 1 2.1e-05 0.00051 12.7 0.0 5 26 512 533 509 564 0.90 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_38 - 753 ResIII PF04851.10 184 0.00027 14.0 3.0 1 1 3.3e-06 0.0004 13.4 0.0 4 52 187 261 184 296 0.86 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 2_29 - 119 RRF PF01765.14 165 0.00011 14.9 1.3 1 1 1.5e-06 0.00018 14.2 1.3 108 162 63 117 49 118 0.85 # 20076 # 20432 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.322 1_38 - 753 DEAD PF00270.24 169 8.7e-05 15.2 0.0 1 2 9.3e-06 0.0011 11.6 0.0 14 40 233 259 216 366 0.66 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 DEAD PF00270.24 169 8.7e-05 15.2 0.0 2 2 0.022 2.6 0.7 0.0 107 142 580 613 537 635 0.77 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 DUF853 PF05872.7 504 1.6e-06 19.9 0.0 1 1 2.4e-08 2.9e-06 19.0 0.0 12 93 224 304 213 311 0.85 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 2_32 - 610 TrwB_AAD_bind PF10412.4 386 4.7e-17 54.8 0.0 1 2 0.00019 0.012 7.4 0.0 13 130 141 266 132 291 0.79 # 23193 # 25022 # -1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_32 - 610 TrwB_AAD_bind PF10412.4 386 4.7e-17 54.8 0.0 2 2 6.2e-16 3.8e-14 45.2 0.0 245 377 415 543 350 547 0.90 # 23193 # 25022 # -1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_38 - 753 TrwB_AAD_bind PF10412.4 386 7.7e-14 44.2 0.1 1 3 4.9e-07 3e-05 15.9 0.0 15 54 233 272 222 289 0.91 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 TrwB_AAD_bind PF10412.4 386 7.7e-14 44.2 0.1 2 3 0.099 6 -1.5 0.1 311 368 406 466 402 476 0.65 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 TrwB_AAD_bind PF10412.4 386 7.7e-14 44.2 0.1 3 3 1.1e-09 6.6e-08 24.7 0.0 216 369 562 720 506 733 0.73 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_41 - 831 AAA_11 PF13086.1 236 8.3e-05 15.4 0.2 1 2 0.074 9.1 -1.1 0.1 140 174 281 313 229 361 0.57 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_41 - 831 AAA_11 PF13086.1 236 8.3e-05 15.4 0.2 2 2 3.6e-06 0.00044 13.0 0.0 7 66 453 504 449 619 0.71 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 717 Sigma54_activ_2 PF14532.1 138 0.00029 14.1 0.0 1 1 6.6e-06 0.0008 12.7 0.0 20 94 507 581 490 604 0.74 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_44 - 162 tRNA_anti_2 PF13742.1 99 0.00039 13.5 0.0 1 1 5e-06 0.00061 12.9 0.0 50 88 47 87 28 97 0.79 # 41271 # 41756 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_32 - 610 T4SS-DNA_transf PF02534.9 469 9.3e-51 165.9 0.1 1 1 1e-52 1.2e-50 165.5 0.1 45 451 144 558 106 583 0.84 # 23193 # 25022 # -1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_41 - 831 RNA_helicase PF00910.17 107 0.00036 13.9 0.0 1 2 0.02 2.5 1.6 0.0 26 86 272 347 251 359 0.64 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_41 - 831 RNA_helicase PF00910.17 107 0.00036 13.9 0.0 2 2 0.00011 0.014 8.9 0.0 2 19 467 484 466 509 0.80 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 2_18 - 151 tRNA_anti-codon PF01336.20 75 2.6e-07 23.7 0.1 1 1 1.2e-08 4.8e-07 22.8 0.1 27 73 47 96 34 103 0.79 # 11957 # 12409 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_44 - 162 tRNA_anti-codon PF01336.20 75 2.8e-07 23.5 0.2 1 1 1.1e-08 4.5e-07 22.9 0.2 27 69 47 97 5 103 0.82 # 41271 # 41756 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_32 - 139 tRNA_anti-codon PF01336.20 75 8.8e-06 18.8 0.1 1 1 4.4e-07 1.8e-05 17.8 0.0 26 61 45 84 39 102 0.81 # 28317 # 28733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.376 1_38 - 753 UvrD-helicase PF00580.16 315 0.00015 14.3 3.6 1 3 0.017 2 0.7 0.0 181 228 159 206 61 219 0.68 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 UvrD-helicase PF00580.16 315 0.00015 14.3 3.6 2 3 6.4e-05 0.0078 8.7 0.0 12 38 232 258 226 264 0.84 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_38 - 753 UvrD-helicase PF00580.16 315 0.00015 14.3 3.6 3 3 0.0033 0.4 3.0 1.3 97 169 379 506 308 609 0.61 # 32263 # 34521 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.359 1_41 - 831 AAA_25 PF13481.1 194 0.00075 12.1 0.0 1 1 2e-05 0.0024 10.4 0.0 31 157 461 591 451 608 0.56 # 37223 # 39715 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 717 AAA_5 PF07728.9 139 0.00013 14.9 0.1 1 1 1.7e-05 0.0021 11.0 0.0 3 62 512 575 510 671 0.76 # 20558 # 22708 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1ac4705c-14e4-4c65-bd8b-939ee4cda901 # Target file: checkm_output/bins/pGCA_000211255.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000211255.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1ac4705c-14e4-4c65-bd8b-939ee4cda901 checkm_output/bins/pGCA_000211255.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:14 2020 # [ok]