# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_5 - 539 UPF0020 PF01170.13 180 7.2e-07 20.6 0.0 1 1 3.4e-08 1.5e-06 19.6 0.0 25 118 228 319 217 328 0.85 # 6659 # 8275 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_14 - 279 MipZ PF09140.6 261 2.4e-07 21.8 0.4 1 2 1e-05 0.00045 11.0 0.1 3 40 5 43 3 51 0.80 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 279 MipZ PF09140.6 261 2.4e-07 21.8 0.4 2 2 4.8e-05 0.0021 8.8 0.0 67 127 92 153 72 163 0.85 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 279 YhjQ PF06564.7 244 2.2e-06 18.8 0.0 1 1 7e-07 3e-05 15.1 0.0 9 150 10 157 2 181 0.72 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 246 Usp PF00582.21 140 0.042 5.8 8.2 1 2 0.00045 0.019 6.9 2.2 17 90 18 84 15 102 0.78 # 4995 # 5732 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_12 - 246 Usp PF00582.21 140 0.042 5.8 8.2 2 2 0.013 0.54 2.2 0.4 59 101 194 240 150 243 0.70 # 4995 # 5732 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_14 - 279 ArsA_ATPase PF02374.10 305 3.9e-07 21.0 0.5 1 1 3.5e-08 1.5e-06 19.1 0.5 9 64 11 63 3 137 0.62 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 279 Fer4_NifH PF00142.13 273 0.00012 13.0 0.4 1 2 1.6e-05 0.0007 10.5 0.1 8 46 11 50 5 82 0.86 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 279 Fer4_NifH PF00142.13 273 0.00012 13.0 0.4 2 2 0.021 0.89 0.3 0.0 159 185 211 237 141 271 0.57 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_14 - 279 CbiA PF01656.18 195 9.5e-30 95.1 0.1 1 1 3.1e-31 1.3e-29 94.7 0.1 2 193 6 225 5 227 0.80 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_8 - 73 Glyco_hydro_4 PF02056.11 183 0.00025 12.1 0.0 1 1 5.8e-06 0.00025 12.1 0.0 53 111 12 70 1 72 0.83 # 3285 # 3503 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_4 - 228 HI0933_like PF03486.9 409 0.00027 11.1 0.0 1 1 1e-05 0.00044 10.4 0.0 287 363 125 199 86 211 0.74 # 1609 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 2_4 - 1056 Ribosomal_L10 PF00466.15 100 0.00012 13.8 1.5 1 2 0.0002 0.0084 7.8 0.3 34 82 344 398 337 414 0.81 # 3478 # 6645 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_4 - 1056 Ribosomal_L10 PF00466.15 100 0.00012 13.8 1.5 2 2 0.0035 0.15 3.8 0.0 50 67 478 495 456 523 0.79 # 3478 # 6645 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_5 - 539 N6_Mtase PF02384.11 311 5.1e-119 388.6 0.0 1 1 1.8e-120 7.8e-119 388.0 0.0 2 308 181 489 180 492 0.96 # 6659 # 8275 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_14 - 279 AAA_31 PF13614.1 157 9.6e-12 36.8 0.0 1 1 3.5e-13 1.5e-11 36.2 0.0 3 154 5 160 3 162 0.86 # 7168 # 8004 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 2_5 - 539 Methyltransf_26 PF13659.1 117 1.8e-12 39.1 0.0 1 1 1.5e-13 6.6e-12 37.3 0.0 3 116 234 368 232 369 0.78 # 6659 # 8275 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_25 - 84 AAA_30 PF13604.1 196 7.7e-05 14.0 0.0 1 1 1.8e-06 7.7e-05 14.0 0.0 47 88 11 52 3 76 0.83 # 17912 # 18163 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 2_5 - 539 Eco57I PF07669.6 106 8.5e-10 30.7 0.0 1 1 1.2e-10 5e-09 28.2 0.0 3 104 308 418 306 420 0.87 # 6659 # 8275 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 2_4 - 1056 ResIII PF04851.10 184 2.9e-34 110.2 0.9 1 1 6.7e-36 2.9e-34 110.2 0.9 4 183 261 431 258 432 0.92 # 3478 # 6645 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_4 - 1056 DEAD PF00270.24 169 8.2e-11 33.4 4.5 1 2 5.2e-12 2.2e-10 32.0 0.1 3 141 264 415 262 437 0.70 # 3478 # 6645 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_4 - 1056 DEAD PF00270.24 169 8.2e-11 33.4 4.5 2 2 0.0063 0.27 2.4 0.1 45 96 521 624 458 642 0.69 # 3478 # 6645 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b082fe58-120e-4534-955b-da4a46a2da5e # Target file: checkm_output/bins/pGCA_000194785.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000194785.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b082fe58-120e-4534-955b-da4a46a2da5e checkm_output/bins/pGCA_000194785.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:02 2020 # [ok]