# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_5 - 277 ATP_bind_3 PF01171.15 182 1.8e-06 19.9 0.0 1 1 4e-08 2.6e-06 19.3 0.0 2 108 21 128 20 139 0.80 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_6 - 539 UPF0020 PF01170.13 180 1.1e-06 20.6 0.0 1 1 3.4e-08 2.2e-06 19.6 0.0 25 118 228 319 217 328 0.85 # 2887 # 4503 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_30 - 279 MipZ PF09140.6 261 3.6e-07 21.8 0.4 1 2 1e-05 0.00068 11.0 0.1 3 40 5 43 3 51 0.80 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_30 - 279 MipZ PF09140.6 261 3.6e-07 21.8 0.4 2 2 4.8e-05 0.0031 8.8 0.0 67 127 92 153 72 163 0.85 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_30 - 279 YhjQ PF06564.7 244 3.4e-06 18.8 0.0 1 1 7e-07 4.6e-05 15.1 0.0 9 150 10 157 2 181 0.72 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_32 - 246 Usp PF00582.21 140 0.063 5.8 8.2 1 2 0.00045 0.029 6.9 2.2 17 90 18 84 15 102 0.78 # 27993 # 28730 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_32 - 246 Usp PF00582.21 140 0.063 5.8 8.2 2 2 0.013 0.82 2.2 0.4 59 101 194 240 150 243 0.70 # 27993 # 28730 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 2_10 - 819 DUF87 PF01935.12 229 4.4e-07 22.2 0.1 1 1 4e-08 2.6e-06 19.7 0.0 28 98 464 529 463 624 0.84 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_10 - 819 AAA_22 PF13401.1 131 5.3e-05 15.7 1.4 1 3 0.00027 0.018 7.5 0.0 3 23 458 478 454 505 0.82 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_10 - 819 AAA_22 PF13401.1 131 5.3e-05 15.7 1.4 2 3 0.0088 0.57 2.6 0.0 73 104 656 688 639 704 0.70 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_10 - 819 AAA_22 PF13401.1 131 5.3e-05 15.7 1.4 3 3 0.05 3.3 0.2 0.2 70 113 711 753 694 773 0.65 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 3_5 - 277 Arginosuc_synth PF00764.14 388 0.00021 12.7 0.1 1 1 4.7e-06 0.00031 12.1 0.1 2 52 23 75 22 93 0.77 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 3_5 - 277 NAD_synthase PF02540.12 242 1.4e-12 39.3 0.1 1 1 6.8e-14 4.4e-12 37.6 0.1 18 91 18 91 8 174 0.78 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_30 - 279 ArsA_ATPase PF02374.10 305 6e-07 21.0 0.5 1 1 3.5e-08 2.3e-06 19.1 0.5 9 64 11 63 3 137 0.62 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 3_5 - 277 TIGR02432 TIGR02432 189 2.3e-05 16.4 0.0 1 1 4.8e-07 3.1e-05 16.0 0.0 2 99 21 116 20 131 0.63 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_30 - 279 Fer4_NifH PF00142.13 273 0.00018 13.0 0.4 1 2 1.6e-05 0.0011 10.5 0.1 8 46 11 50 5 82 0.86 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_30 - 279 Fer4_NifH PF00142.13 273 0.00018 13.0 0.4 2 2 0.021 1.3 0.3 0.0 159 185 211 237 141 271 0.57 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 3_5 - 277 QueC PF06508.8 210 2.5e-05 15.9 0.1 1 1 1.3e-06 8.2e-05 14.2 0.0 3 57 22 77 20 96 0.82 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_30 - 279 CbiA PF01656.18 195 1.4e-29 95.1 0.1 1 1 3.1e-31 2e-29 94.7 0.1 2 193 6 225 5 227 0.80 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_36 - 73 Glyco_hydro_4 PF02056.11 183 0.00038 12.1 0.0 1 1 5.8e-06 0.00038 12.1 0.0 53 111 12 70 1 72 0.83 # 30222 # 30440 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 4_1 - 228 HI0933_like PF03486.9 409 0.0004 11.1 0.0 1 1 1e-05 0.00067 10.4 0.0 287 363 125 199 86 211 0.74 # 74 # 757 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 3_5 - 277 PAPS_reduct PF01507.14 174 0.00044 12.4 0.0 1 1 1.2e-05 0.00077 11.6 0.0 2 72 21 93 20 133 0.72 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_7 - 1056 Ribosomal_L10 PF00466.15 100 0.00017 13.8 1.5 1 2 0.0002 0.013 7.8 0.3 34 82 344 398 337 414 0.81 # 4517 # 7684 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_7 - 1056 Ribosomal_L10 PF00466.15 100 0.00017 13.8 1.5 2 2 0.0035 0.23 3.8 0.0 50 67 478 495 456 523 0.79 # 4517 # 7684 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_6 - 539 N6_Mtase PF02384.11 311 7.6e-119 388.6 0.0 1 1 1.8e-120 1.2e-118 388.0 0.0 2 308 181 489 180 492 0.96 # 2887 # 4503 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 2_14 - 632 TraG-D_C PF12696.2 128 2.8e-31 100.4 0.2 1 1 9.7e-33 6.3e-31 99.2 0.0 2 126 416 532 415 534 0.87 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_5 - 277 Asn_synthase PF00733.16 255 1.1e-07 23.9 0.0 1 1 2.7e-09 1.7e-07 23.2 0.0 14 95 15 100 7 114 0.79 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_30 - 279 AAA_31 PF13614.1 157 1.5e-11 36.8 0.0 1 1 3.5e-13 2.3e-11 36.2 0.0 3 154 5 160 3 162 0.86 # 25721 # 26557 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_6 - 539 Methyltransf_26 PF13659.1 117 2.7e-12 39.1 0.0 1 1 1.5e-13 1e-11 37.3 0.0 3 116 234 368 232 369 0.78 # 2887 # 4503 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_19 - 84 AAA_30 PF13604.1 196 0.00012 14.0 0.0 1 1 1.8e-06 0.00012 14.0 0.0 47 88 11 52 3 76 0.83 # 15562 # 15813 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 2_10 - 819 FtsK_SpoIIIE PF01580.13 205 0.00032 12.5 0.0 1 1 1.3e-05 0.00083 11.1 0.0 23 64 441 485 428 512 0.74 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_6 - 539 Eco57I PF07669.6 106 1.3e-09 30.7 0.0 1 1 1.2e-10 7.6e-09 28.2 0.0 3 104 308 418 306 420 0.87 # 2887 # 4503 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 2_14 - 632 AAA_19 PF13245.1 76 8.5e-05 14.6 0.2 1 1 3.3e-06 0.00022 13.3 0.2 9 28 148 167 144 169 0.85 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 2_10 - 819 AAA_10 PF12846.2 304 8.9e-56 181.8 3.3 1 2 0.063 2.1 -0.1 0.1 87 135 116 162 18 236 0.58 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_10 - 819 AAA_10 PF12846.2 304 8.9e-56 181.8 3.3 2 2 2.8e-57 9e-56 181.7 0.2 2 303 460 753 459 754 0.91 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_14 - 632 AAA_10 PF12846.2 304 1.6e-07 23.3 0.0 1 1 1.2e-08 3.8e-07 22.0 0.0 2 300 150 493 149 496 0.68 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 1056 ResIII PF04851.10 184 4.3e-34 110.2 0.9 1 1 1.3e-35 4.3e-34 110.2 0.9 4 183 261 431 258 432 0.92 # 4517 # 7684 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_14 - 632 ResIII PF04851.10 184 0.00075 11.6 1.6 1 1 2.9e-05 0.00093 11.3 0.1 24 95 148 217 101 255 0.74 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 1056 DEAD PF00270.24 169 1.2e-10 33.4 4.5 1 2 5.2e-12 3.3e-10 32.0 0.1 3 141 264 415 262 437 0.70 # 4517 # 7684 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_7 - 1056 DEAD PF00270.24 169 1.2e-10 33.4 4.5 2 2 0.0063 0.41 2.4 0.1 45 96 521 624 458 642 0.69 # 4517 # 7684 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_14 - 632 TrwB_AAD_bind PF10412.4 386 9.6e-25 79.2 0.0 1 2 1.9e-08 1.3e-06 19.5 0.0 15 135 149 277 140 289 0.78 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 2_14 - 632 TrwB_AAD_bind PF10412.4 386 9.6e-25 79.2 0.0 2 2 5.7e-20 3.7e-18 57.5 0.0 202 377 369 544 320 552 0.87 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 2_14 - 632 T4SS-DNA_transf PF02534.9 469 1e-61 201.1 0.0 1 1 2.2e-63 1.4e-61 200.7 0.0 44 446 145 554 105 580 0.86 # 14696 # 16591 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_5 - 277 tRNA_Me_trans PF03054.11 356 0.00026 11.9 0.2 1 2 4.6e-05 0.003 8.4 0.1 1 37 19 56 19 83 0.68 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 3_5 - 277 tRNA_Me_trans PF03054.11 356 0.00026 11.9 0.2 2 2 0.0059 0.38 1.4 0.0 169 193 151 175 137 181 0.83 # 2918 # 3748 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 2_10 - 819 AAA_25 PF13481.1 194 0.00013 13.7 0.3 1 2 0.022 1.5 0.5 0.1 98 152 348 395 331 401 0.70 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_10 - 819 AAA_25 PF13481.1 194 0.00013 13.7 0.3 2 2 6e-05 0.0039 8.9 0.0 34 58 460 484 441 511 0.75 # 10826 # 13282 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a6bf113f-69a2-43ca-8bb3-31643e0639fa # Target file: checkm_output/bins/pGCA_000194765.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000194765.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a6bf113f-69a2-43ca-8bb3-31643e0639fa checkm_output/bins/pGCA_000194765.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:01 2020 # [ok]