# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_11 - 729 UPF0020 PF01170.13 180 4.2e-14 45.6 0.1 1 3 0.012 0.45 3.1 0.0 80 119 113 151 108 160 0.76 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 UPF0020 PF01170.13 180 4.2e-14 45.6 0.1 2 3 3.3e-08 1.3e-06 21.2 0.0 9 58 293 356 283 386 0.67 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 UPF0020 PF01170.13 180 4.2e-14 45.6 0.1 3 3 6.1e-07 2.4e-05 17.1 0.0 86 121 528 564 508 571 0.85 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 6_8 - 532 UPF0020 PF01170.13 180 1.7e-05 17.5 0.0 1 1 9.3e-07 3.6e-05 16.5 0.0 31 120 219 306 202 314 0.77 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 1_8 - 1453 UPF0020 PF01170.13 180 7.4e-05 15.5 0.0 1 1 5.1e-06 0.0002 14.1 0.0 104 159 1115 1170 1086 1190 0.76 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 11_3 - 243 cobW PF02492.14 178 0.00032 13.3 1.0 1 1 4.4e-06 0.00052 12.6 1.0 15 123 26 137 22 189 0.62 # 484 # 1212 # 1 # ID=11_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.265 5_7 - 404 Seryl_tRNA_N PF02403.17 108 6.6e-05 16.1 12.6 1 2 1.1e-06 6.6e-05 16.1 12.6 4 104 249 348 245 352 0.89 # 5011 # 6222 # 1 # ID=5_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 5_7 - 404 Seryl_tRNA_N PF02403.17 108 6.6e-05 16.1 12.6 2 2 0.032 1.8 1.8 6.4 65 99 366 401 344 403 0.59 # 5011 # 6222 # 1 # ID=5_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 12_2 - 50 Seryl_tRNA_N PF02403.17 108 0.0001 15.4 1.0 1 1 1.8e-06 0.0001 15.4 1.0 66 98 6 41 1 47 0.72 # 748 # 897 # 1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.273 9_5 - 146 Usp PF00582.21 140 1e-24 80.4 0.0 1 1 1e-26 1.2e-24 80.2 0.0 2 140 7 145 6 145 0.97 # 3517 # 3954 # 1 # ID=9_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.361 3_10 - 794 DUF87 PF01935.12 229 1.3e-07 24.8 0.6 1 1 2.2e-09 1.3e-07 24.8 0.6 28 175 465 607 461 641 0.72 # 7662 # 10043 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 5_1 - 469 DUF87 PF01935.12 229 3.9e-07 23.2 0.5 1 1 1.5e-08 8.7e-07 22.0 0.5 28 101 138 206 133 317 0.62 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_8 - 1453 AAA_22 PF13401.1 131 0.00029 14.1 0.5 1 2 0.0019 0.055 6.8 0.0 89 129 416 458 394 460 0.72 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_8 - 1453 AAA_22 PF13401.1 131 0.00029 14.1 0.5 2 2 0.043 1.2 2.4 0.0 58 112 730 794 714 803 0.78 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 15_1 - 112 AAA_22 PF13401.1 131 0.00043 13.6 0.0 1 1 2.7e-05 0.00078 12.7 0.0 6 100 9 98 5 108 0.75 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 5_1 - 469 AAA_22 PF13401.1 131 0.00082 12.7 0.0 1 1 0.00011 0.0031 10.8 0.0 5 23 134 152 128 175 0.90 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 6_9 - 1026 AAA_22 PF13401.1 131 0.0017 11.6 6.9 1 1 2.5e-05 0.00074 12.8 1.0 68 125 360 447 281 452 0.52 # 5933 # 9010 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 7_7 - 112 TIGR00855 TIGR00855 125 4.4e-06 20.0 0.4 1 1 9.1e-08 5.3e-06 19.7 0.4 53 97 66 109 49 111 0.71 # 4656 # 4991 # -1 # ID=7_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 5_5 - 121 TIGR00855 TIGR00855 125 0.00033 13.9 0.1 1 1 7.5e-06 0.00043 13.5 0.1 56 99 77 118 57 120 0.77 # 4296 # 4658 # 1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.278 10_2 - 170 NAD_binding_7 PF13241.1 103 0.00087 12.7 0.0 1 1 1.1e-05 0.0012 12.2 0.0 57 102 48 100 9 101 0.74 # 469 # 978 # 1 # ID=10_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 2_11 - 729 N6_N4_Mtase PF01555.13 231 5.3e-07 22.4 0.2 1 2 4.7e-06 0.00054 12.6 0.0 110 210 241 332 32 349 0.77 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 N6_N4_Mtase PF01555.13 231 5.3e-07 22.4 0.2 2 2 0.00028 0.032 6.8 0.0 2 64 551 675 550 728 0.63 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 1_3 - 847 AAA_17 PF13207.1 121 0.0002 15.3 8.4 1 2 0.034 3.9 1.5 0.2 50 102 40 89 14 162 0.67 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 847 AAA_17 PF13207.1 121 0.0002 15.3 8.4 2 2 2.1e-06 0.00024 15.1 1.1 4 63 291 369 290 575 0.79 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 847 AAA_21 PF13304.1 303 8.5e-10 32.1 15.3 1 1 1.5e-11 8.5e-10 32.1 15.3 77 302 566 773 545 774 0.84 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 4_3 - 198 AAA_21 PF13304.1 303 0.089 5.8 18.2 1 1 0.002 0.11 5.4 18.2 63 219 21 179 6 196 0.75 # 2162 # 2755 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.269 10_4 - 973 SKI PF01202.17 158 0.0024 10.8 2.6 1 2 8.9e-05 0.01 8.8 0.0 5 61 74 131 72 194 0.92 # 1586 # 4504 # 1 # ID=10_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 10_4 - 973 SKI PF01202.17 158 0.0024 10.8 2.6 2 2 0.042 4.9 0.1 0.1 90 131 513 554 487 567 0.69 # 1586 # 4504 # 1 # ID=10_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 847 SMC_N PF02463.14 220 0.00021 13.6 33.6 1 3 0.089 10 -1.7 0.0 73 135 95 161 83 178 0.66 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 847 SMC_N PF02463.14 220 0.00021 13.6 33.6 2 3 0.00029 0.034 6.5 0.1 17 53 279 315 273 332 0.85 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 847 SMC_N PF02463.14 220 0.00021 13.6 33.6 3 3 3e-05 0.0034 9.7 27.1 73 212 424 783 400 791 0.86 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 15_1 - 112 Arch_ATPase PF01637.13 234 2.3e-06 20.5 0.0 1 1 4.2e-08 2.4e-06 20.5 0.0 21 68 8 55 2 96 0.86 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 8_10 - 178 Arch_ATPase PF01637.13 234 5.3e-06 19.4 0.2 1 1 1.6e-07 9.5e-06 18.5 0.0 22 68 75 121 71 158 0.87 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_3 - 847 AAA_16 PF13191.1 185 0.0004 13.5 0.0 1 1 7.4e-05 0.0043 10.2 0.0 27 60 289 322 276 410 0.90 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 5_1 - 469 AAA_16 PF13191.1 185 0.0008 12.5 0.0 1 1 2.8e-05 0.0016 11.5 0.0 24 63 133 174 122 200 0.80 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 7_9 - 85 AAA_13 PF13166.1 712 0.0089 7.5 10.3 1 1 8.3e-05 0.0096 7.4 10.3 284 349 3 67 1 74 0.86 # 5523 # 5777 # -1 # ID=7_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 6_8 - 532 Methyltransf_25 PF13649.1 101 0.0008 12.9 0.0 1 2 0.00029 0.033 7.7 0.0 2 74 221 306 220 341 0.76 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 6_8 - 532 Methyltransf_25 PF13649.1 101 0.0008 12.9 0.0 2 2 0.028 3.2 1.3 0.0 42 74 436 501 388 528 0.47 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 8_10 - 178 KaiC PF06745.8 227 5.9e-09 28.4 0.2 1 2 1.3e-09 4.9e-08 25.4 0.1 2 59 55 112 54 129 0.80 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 8_10 - 178 KaiC PF06745.8 227 5.9e-09 28.4 0.2 2 2 0.049 1.9 0.6 0.0 106 127 142 163 123 172 0.73 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 5_1 - 469 KaiC PF06745.8 227 6e-07 21.9 0.1 1 2 9.8e-07 3.8e-05 16.0 0.0 19 132 133 252 121 264 0.85 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 5_1 - 469 KaiC PF06745.8 227 6e-07 21.9 0.1 2 2 0.0057 0.22 3.7 0.0 81 151 302 376 282 394 0.85 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 15_1 - 112 KaiC PF06745.8 227 6.1e-05 15.3 0.1 1 1 1.1e-05 0.00041 12.6 0.1 17 72 5 57 3 106 0.81 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 5_1 - 469 AAA_14 PF13173.1 128 7.1e-07 22.3 0.9 1 3 0.00012 0.0036 10.3 0.0 6 56 137 188 132 205 0.71 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 5_1 - 469 AAA_14 PF13173.1 128 7.1e-07 22.3 0.9 2 3 0.0016 0.046 6.7 0.4 69 123 259 313 216 316 0.65 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 5_1 - 469 AAA_14 PF13173.1 128 7.1e-07 22.3 0.9 3 3 0.063 1.8 1.6 0.0 58 74 337 363 317 414 0.68 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 15_1 - 112 AAA_14 PF13173.1 128 2.3e-05 17.5 0.0 1 1 9.1e-07 2.6e-05 17.2 0.0 4 74 9 84 6 100 0.69 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 8_10 - 178 AAA_14 PF13173.1 128 3.6e-05 16.8 0.0 1 1 3.2e-06 9.3e-05 15.5 0.0 4 73 75 149 72 166 0.67 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_3 - 847 AAA_14 PF13173.1 128 0.0025 10.9 0.0 1 1 8.6e-05 0.0025 10.9 0.0 5 40 289 323 285 346 0.79 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 5_1 - 469 AAA_29 PF13555.1 62 0.00015 14.4 0.2 1 1 1.3e-05 0.00077 12.1 0.1 19 37 131 147 116 156 0.80 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_3 - 847 AAA_29 PF13555.1 62 0.00063 12.4 0.1 1 1 2.5e-05 0.0014 11.3 0.1 26 59 289 322 275 325 0.79 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 15_1 - 112 CobU PF02283.11 167 0.00023 13.7 0.1 1 1 4.3e-06 0.00025 13.6 0.1 4 42 13 54 10 101 0.79 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 8_10 - 178 CobU PF02283.11 167 0.0005 12.6 0.0 1 1 1.3e-05 0.00073 12.1 0.0 4 41 79 119 76 165 0.81 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_3 - 847 MMR_HSR1 PF01926.18 116 0.0032 10.6 6.7 1 2 0.007 0.82 2.8 0.0 58 104 169 212 137 223 0.80 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_3 - 847 MMR_HSR1 PF01926.18 116 0.0032 10.6 6.7 2 2 9.1e-05 0.011 8.9 0.6 4 28 291 311 289 413 0.82 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 6_8 - 532 N6_Mtase PF02384.11 311 2.3e-121 397.7 0.0 1 1 5.5e-123 3.2e-121 397.2 0.0 2 310 168 476 167 477 0.98 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 231 N6_Mtase PF02384.11 311 1.6e-07 23.8 0.0 1 1 5.2e-09 3e-07 22.9 0.0 20 106 11 114 4 138 0.76 # 13160 # 13852 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.310 3_14 - 240 TraG-D_C PF12696.2 128 6.7e-38 122.6 0.0 1 1 8.1e-40 9.4e-38 122.1 0.0 2 128 48 167 47 167 0.89 # 11855 # 12574 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 15_1 - 112 KTI12 PF08433.5 270 0.00028 13.2 0.0 1 1 6.6e-06 0.00038 12.8 0.0 3 41 9 47 8 61 0.87 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 8_10 - 178 KTI12 PF08433.5 270 0.00061 12.1 0.0 1 1 1.6e-05 0.00095 11.5 0.0 3 41 75 113 74 127 0.87 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 2_11 - 729 Methyltransf_26 PF13659.1 117 2e-16 53.2 0.0 1 2 0.00043 0.013 8.7 0.0 56 87 124 155 55 218 0.81 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 Methyltransf_26 PF13659.1 117 2e-16 53.2 0.0 2 2 7.4e-14 2.1e-12 40.2 0.0 3 88 316 567 315 625 0.87 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 6_8 - 532 Methyltransf_26 PF13659.1 117 8.6e-14 44.7 0.0 1 1 7.9e-15 2.3e-13 43.4 0.0 2 116 218 353 217 354 0.78 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 1_9 - 231 Methyltransf_26 PF13659.1 117 2.8e-06 20.5 0.0 1 1 1.1e-07 3.1e-06 20.4 0.0 3 46 45 108 43 187 0.85 # 13160 # 13852 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_8 - 1453 Methyltransf_26 PF13659.1 117 0.0002 14.5 0.0 1 1 1.7e-05 0.00049 13.3 0.0 66 103 1113 1151 1008 1158 0.74 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 9_2 - 72 AAA_30 PF13604.1 196 0.00088 12.0 0.0 1 1 7.6e-06 0.00089 12.0 0.0 46 98 12 58 1 61 0.81 # 601 # 816 # 1 # ID=9_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.370 5_1 - 469 FtsK_SpoIIIE PF01580.13 205 0.00064 12.3 0.0 1 1 1.8e-05 0.0011 11.6 0.0 30 66 121 161 103 183 0.75 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 8_1 - 394 FtsK_SpoIIIE PF01580.13 205 0.00074 12.1 0.0 1 2 9.4e-05 0.0055 9.3 0.0 27 53 133 159 108 162 0.81 # 91 # 1272 # -1 # ID=8_1;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 8_1 - 394 FtsK_SpoIIIE PF01580.13 205 0.00074 12.1 0.0 2 2 0.055 3.2 0.3 0.0 81 161 277 359 274 361 0.77 # 91 # 1272 # -1 # ID=8_1;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 6_8 - 532 MTS PF05175.9 170 0.00021 13.8 0.0 1 1 7.2e-06 0.00042 12.8 0.0 55 140 243 352 211 365 0.71 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 2_11 - 729 MTS PF05175.9 170 0.00048 12.6 0.1 1 1 0.00012 0.0069 8.9 0.0 60 112 508 563 494 573 0.81 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 8_10 - 178 RecA PF00154.16 323 2.8e-60 197.1 0.5 1 1 1.4e-61 3.2e-60 196.9 0.5 3 151 24 171 22 178 0.96 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 13_1 - 183 RecA PF00154.16 323 1.5e-57 188.2 0.4 1 1 7e-59 1.6e-57 188.0 0.4 123 307 2 183 1 183 0.97 # 3 # 551 # -1 # ID=13_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 15_1 - 112 RecA PF00154.16 323 5.6e-46 150.1 0.1 1 1 2.7e-47 6.2e-46 150.0 0.1 51 151 5 105 2 112 0.97 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 11_4 - 59 RecA PF00154.16 323 4.7e-10 32.1 0.0 1 1 2.1e-11 4.8e-10 32.0 0.0 268 321 2 55 1 57 0.93 # 1672 # 1848 # -1 # ID=11_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 2_1 - 59 RecA PF00154.16 323 2.2e-09 29.9 0.0 1 1 9.7e-11 2.2e-09 29.8 0.0 268 321 2 55 1 57 0.92 # 3 # 179 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 2_11 - 729 Cons_hypoth95 PF03602.10 183 2.7e-07 23.3 0.1 1 3 0.0013 0.15 4.5 0.0 111 137 135 160 112 182 0.79 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 Cons_hypoth95 PF03602.10 183 2.7e-07 23.3 0.1 2 3 0.0028 0.32 3.4 0.0 41 59 312 330 303 380 0.83 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 Cons_hypoth95 PF03602.10 183 2.7e-07 23.3 0.1 3 3 1.3e-05 0.0016 11.0 0.0 74 129 502 564 493 575 0.69 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 1_8 - 1453 Eco57I PF07669.6 106 2.6e-33 107.7 0.1 1 1 2.1e-34 1.2e-32 105.6 0.1 1 105 1116 1215 1116 1216 0.95 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 6_8 - 532 Eco57I PF07669.6 106 7e-07 22.8 0.1 1 1 7.5e-08 4.4e-06 20.2 0.0 2 104 292 403 291 405 0.87 # 4338 # 5933 # -1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.403 15_1 - 112 DAP3 PF10236.4 309 0.00066 11.7 0.0 1 1 6.8e-06 0.00079 11.5 0.0 28 88 12 72 2 86 0.82 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 5_1 - 469 AAA_19 PF13245.1 76 0.00083 12.3 0.0 1 1 1.4e-05 0.0016 11.3 0.0 14 52 137 173 128 176 0.83 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 3_10 - 794 AAA_10 PF12846.2 304 2.3e-44 145.1 5.3 1 3 0.068 2.6 0.4 0.3 75 145 69 150 18 201 0.69 # 7662 # 10043 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_10 - 794 AAA_10 PF12846.2 304 2.3e-44 145.1 5.3 2 3 0.037 1.4 1.3 0.0 109 169 313 384 263 436 0.75 # 7662 # 10043 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_10 - 794 AAA_10 PF12846.2 304 2.3e-44 145.1 5.3 3 3 1.2e-45 4.7e-44 144.1 0.3 1 303 460 751 460 752 0.92 # 7662 # 10043 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 5_1 - 469 AAA_10 PF12846.2 304 6e-44 143.7 0.1 1 1 2.3e-45 8.9e-44 143.2 0.1 1 303 133 426 133 427 0.91 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 8_1 - 394 AAA_10 PF12846.2 304 0.00013 14.5 0.1 1 1 1.1e-05 0.00042 12.9 0.1 1 191 144 356 144 365 0.71 # 91 # 1272 # -1 # ID=8_1;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 3_8 - 200 Ribosomal_L13 PF00572.13 128 0.0009 12.4 2.1 1 2 0.032 3.7 0.7 0.2 40 88 27 75 25 96 0.72 # 5163 # 5762 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.312 3_8 - 200 Ribosomal_L13 PF00572.13 128 0.0009 12.4 2.1 2 2 2.6e-05 0.003 10.8 0.1 20 62 129 171 116 190 0.82 # 5163 # 5762 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.312 6_9 - 1026 ResIII PF04851.10 184 2.1e-44 144.6 2.7 1 1 3.7e-46 2.1e-44 144.6 2.7 2 183 262 448 261 449 0.95 # 5933 # 9010 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_8 - 1453 ResIII PF04851.10 184 1.3e-17 57.4 0.1 1 1 2.2e-19 1.3e-17 57.4 0.1 2 183 292 454 291 455 0.89 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 7_9 - 85 TIGR00019 TIGR00019 361 0.0086 7.7 7.6 1 1 8.3e-05 0.0096 7.6 7.6 50 101 13 65 2 76 0.75 # 5523 # 5777 # -1 # ID=7_9;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 5_1 - 469 DUF2075 PF09848.4 352 0.00024 13.2 0.3 1 2 0.00011 0.013 7.5 0.0 5 55 137 186 133 207 0.65 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 5_1 - 469 DUF2075 PF09848.4 352 0.00024 13.2 0.3 2 2 0.0015 0.18 3.8 0.1 30 146 243 369 218 445 0.71 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 6_9 - 1026 DEAD PF00270.24 169 8.1e-12 38.0 0.5 1 1 2.1e-13 8.1e-12 38.0 0.5 3 147 267 435 265 454 0.69 # 5933 # 9010 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 8_1 - 394 DEAD PF00270.24 169 8.5e-06 18.5 0.0 1 1 3.1e-07 1.2e-05 18.0 0.0 13 64 143 390 132 393 0.71 # 91 # 1272 # -1 # ID=8_1;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 10_2 - 170 DEAD PF00270.24 169 0.00063 12.4 0.0 1 1 1.6e-05 0.00063 12.4 0.0 45 89 78 140 12 167 0.69 # 469 # 978 # 1 # ID=10_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 3_14 - 240 TrwB_AAD_bind PF10412.4 386 2.7e-18 58.8 0.0 1 1 3.1e-20 3.6e-18 58.4 0.0 215 375 13 175 8 182 0.88 # 11855 # 12574 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 2_11 - 729 N6-adenineMlase PF10237.4 162 0.00029 13.6 0.0 1 2 0.00013 0.015 8.1 0.0 58 110 106 165 99 191 0.74 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 N6-adenineMlase PF10237.4 162 0.00029 13.6 0.0 2 2 0.0069 0.8 2.4 0.0 73 96 535 559 524 574 0.84 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 3_6 - 76 TIGR00344 TIGR00344 847 0.0029 8.6 6.0 1 1 2.6e-05 0.003 8.5 6.0 704 762 3 58 1 71 0.73 # 4611 # 4838 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.294 12_2 - 50 Kinesin-relat_1 PF12711.2 86 0.0001 15.8 3.4 1 1 9.9e-07 0.00012 15.7 3.4 18 46 4 32 1 44 0.88 # 748 # 897 # 1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.273 3_14 - 240 T4SS-DNA_transf PF02534.9 469 9.3e-31 99.9 0.0 1 1 1.8e-32 1.1e-30 99.7 0.0 285 444 27 185 5 204 0.82 # 11855 # 12574 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 8_1 - 394 T4SS-DNA_transf PF02534.9 469 3.1e-25 81.7 0.5 1 1 7e-27 4.1e-25 81.3 0.5 2 279 103 390 102 393 0.68 # 91 # 1272 # -1 # ID=8_1;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 5_10 - 161 AAA_32 PF13654.1 509 0.00018 13.3 5.3 1 1 2e-06 0.00023 13.0 5.3 137 242 56 157 35 159 0.82 # 7805 # 8287 # 1 # ID=5_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 2_11 - 729 MethyltransfD12 PF02086.10 260 1.8e-06 20.7 5.1 1 3 0.0034 0.39 3.2 0.1 160 194 123 155 98 173 0.67 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 MethyltransfD12 PF02086.10 260 1.8e-06 20.7 5.1 2 3 7.7e-08 9e-06 18.4 0.1 7 94 303 395 300 484 0.82 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_11 - 729 MethyltransfD12 PF02086.10 260 1.8e-06 20.7 5.1 3 3 0.06 7 -0.9 0.1 155 201 525 573 506 577 0.67 # 10650 # 12836 # -1 # ID=2_11;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 5_6 - 76 PDH PF02153.12 258 0.00024 13.1 1.8 1 1 2.9e-06 0.00034 12.6 1.8 220 257 14 51 6 52 0.90 # 4651 # 4878 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 3_10 - 794 RNA_helicase PF00910.17 107 8.5e-05 15.9 0.1 1 2 0.00042 0.024 8.0 0.0 3 43 465 502 464 507 0.80 # 7662 # 10043 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_10 - 794 RNA_helicase PF00910.17 107 8.5e-05 15.9 0.1 2 2 0.0096 0.55 3.6 0.1 11 79 545 611 542 633 0.73 # 7662 # 10043 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 5_1 - 469 RNA_helicase PF00910.17 107 0.00057 13.2 0.0 1 1 4.5e-05 0.0026 11.1 0.0 3 45 138 177 137 184 0.88 # 112 # 1518 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 15_1 - 112 AAA_24 PF13479.1 213 0.00028 13.6 0.0 1 1 6.4e-06 0.00037 13.2 0.0 8 80 12 97 9 100 0.76 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 8_10 - 178 AAA_24 PF13479.1 213 0.00072 12.3 0.0 1 1 2.4e-05 0.0014 11.4 0.0 8 80 78 163 75 166 0.77 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 8_10 - 178 AAA_25 PF13481.1 194 1.2e-08 27.7 0.2 1 1 1.7e-09 9.6e-08 24.7 0.2 27 159 66 168 45 177 0.74 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 15_1 - 112 AAA_25 PF13481.1 194 2.2e-08 26.8 0.3 1 1 3.6e-09 2.1e-07 23.6 0.3 31 160 5 103 4 111 0.74 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 1_8 - 1453 SNF2_N PF00176.18 299 3.7e-10 32.1 0.5 1 1 2.3e-11 1.4e-09 30.3 0.1 17 174 304 455 225 466 0.78 # 8800 # 13158 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 6_9 - 1026 SNF2_N PF00176.18 299 6.8e-10 31.2 0.4 1 1 1.2e-11 6.8e-10 31.2 0.4 2 175 268 450 204 459 0.78 # 5933 # 9010 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_3 - 847 AAA_28 PF13521.1 163 0.00011 15.3 0.0 1 1 7.9e-06 0.0003 13.9 0.0 4 23 291 311 289 348 0.83 # 1557 # 4097 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.290 15_1 - 112 AAA_28 PF13521.1 163 0.00027 14.0 0.1 1 1 7.1e-06 0.00028 14.0 0.1 3 25 11 38 9 92 0.84 # 2 # 337 # -1 # ID=15_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.402 8_10 - 178 AAA_28 PF13521.1 163 0.00055 13.0 0.0 1 1 1.8e-05 0.00068 12.7 0.0 3 24 77 103 75 156 0.84 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 8_10 - 178 Rad51 PF08423.6 256 1.1e-05 17.6 0.1 1 1 5e-07 2.9e-05 16.1 0.1 13 144 47 162 34 167 0.70 # 7431 # 7964 # 1 # ID=8_10;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 13_1 - 183 Rad51 PF08423.6 256 2.1e-05 16.6 0.0 1 1 5.1e-07 2.9e-05 16.1 0.0 132 224 9 99 2 111 0.84 # 3 # 551 # -1 # ID=13_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/64bbef83-d5a3-479f-8f96-59f3c23ef110 # Target file: checkm_output/bins/pGCA_000192705.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000192705.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/64bbef83-d5a3-479f-8f96-59f3c23ef110 checkm_output/bins/pGCA_000192705.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:01 2020 # [ok]