# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 246 Methyltransf_32 PF13679.1 141 2.6e-06 17.9 0.0 1 1 1.9e-07 4.1e-06 17.3 0.0 12 70 17 68 9 122 0.82 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 RrnaAD PF00398.15 262 2.1e-74 240.6 6.8 1 1 1e-75 2.3e-74 240.4 6.8 3 261 2 242 1 243 0.96 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 1_2 - 296 MipZ PF09140.6 261 5.2e-13 39.4 3.1 1 2 3.1e-11 6.7e-10 29.2 0.0 3 79 5 79 3 117 0.75 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 MipZ PF09140.6 261 5.2e-13 39.4 3.1 2 2 1e-05 0.00022 11.0 0.1 74 126 123 175 105 185 0.79 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 YhjQ PF06564.7 244 6.9e-12 35.9 0.2 1 1 5.5e-11 1.2e-09 28.6 0.2 7 151 8 181 1 186 0.68 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_11 - 110 SSB PF00436.20 104 1.4e-27 86.4 0.1 1 1 7.3e-29 1.6e-27 86.2 0.1 1 104 1 99 1 99 0.96 # 9913 # 10242 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.412 2_4 - 246 Methyltransf_18 PF12847.2 112 2.9e-10 31.6 0.0 1 1 1.9e-11 4.2e-10 31.0 0.0 2 74 30 98 29 150 0.88 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 Methyltransf_11 PF08241.7 95 1.3e-05 16.5 0.0 1 1 1.1e-06 2.5e-05 15.6 0.0 2 59 35 92 34 101 0.85 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 1_6 - 425 DNA_methylase PF00145.12 335 1.9e-69 225.0 0.1 1 2 1.2e-52 2.6e-51 165.4 0.0 2 199 77 302 76 310 0.93 # 4272 # 5546 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.371 1_6 - 425 DNA_methylase PF00145.12 335 1.9e-69 225.0 0.1 2 2 6.6e-20 1.5e-18 57.7 0.0 228 332 307 415 301 418 0.80 # 4272 # 5546 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.371 1_2 - 296 SRP54 PF00448.17 196 0.00018 11.7 0.5 1 2 5e-05 0.0011 9.2 0.1 10 43 12 45 2 87 0.83 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 SRP54 PF00448.17 196 0.00018 11.7 0.5 2 2 0.03 0.67 0.1 0.0 66 90 131 154 112 158 0.64 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 ArsA_ATPase PF02374.10 305 8.2e-15 45.3 1.7 1 2 1.5e-15 3.3e-14 43.3 0.5 5 137 7 158 3 163 0.69 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 ArsA_ATPase PF02374.10 305 8.2e-15 45.3 1.7 2 2 0.04 0.88 -0.8 0.0 92 129 170 208 160 212 0.68 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 2_4 - 246 CMAS PF02353.15 273 2.7e-05 14.0 0.4 1 1 2.6e-06 5.6e-05 13.0 0.0 51 105 18 71 12 103 0.77 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 1_2 - 296 Fer4_NifH PF00142.13 273 1.3e-07 21.8 1.8 1 2 7.7e-09 1.7e-07 21.4 0.0 8 48 11 51 5 83 0.88 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 Fer4_NifH PF00142.13 273 1.3e-07 21.8 1.8 2 2 0.082 1.8 -1.7 0.1 108 124 139 155 132 204 0.76 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 CbiA PF01656.18 195 3.3e-35 112.0 0.1 1 1 2.1e-36 4.5e-35 111.5 0.1 3 193 7 250 5 252 0.81 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 2_4 - 246 PCMT PF01135.14 210 1.7e-07 21.7 0.0 1 1 1.6e-08 3.5e-07 20.7 0.0 58 122 14 75 2 87 0.83 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 1_2 - 296 AAA_31 PF13614.1 157 2.3e-11 34.6 4.2 1 2 1.6e-11 3.5e-10 30.8 1.7 9 151 11 180 4 185 0.86 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_2 - 296 AAA_31 PF13614.1 157 2.3e-11 34.6 4.2 2 2 0.047 1 0.0 0.0 34 69 227 260 212 283 0.72 # 2084 # 2971 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 2_4 - 246 Methyltransf_26 PF13659.1 117 1.3e-08 25.7 0.0 1 1 9.8e-10 2.1e-08 25.0 0.0 2 81 31 104 30 200 0.79 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 MTS PF05175.9 170 2.4e-06 17.8 0.0 1 1 1.7e-07 3.8e-06 17.1 0.0 24 95 22 89 9 121 0.82 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 NodS PF05401.6 201 1.5e-08 25.0 0.0 1 1 1.1e-09 2.4e-08 24.3 0.0 41 119 27 105 7 115 0.83 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 Methyltransf_31 PF13847.1 152 1.5e-08 25.2 0.0 1 1 1.1e-09 2.4e-08 24.5 0.0 2 79 28 100 27 196 0.85 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 TRM13 PF05206.9 259 3e-05 14.1 0.1 1 1 2.2e-06 4.9e-05 13.4 0.1 4 67 15 78 12 98 0.79 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 DOT1 PF08123.8 205 7.1e-06 16.2 0.2 1 2 8.1e-07 1.8e-05 14.9 0.0 28 88 15 73 11 101 0.79 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 DOT1 PF08123.8 205 7.1e-06 16.2 0.2 2 2 0.099 2.2 -1.7 0.1 83 119 184 220 168 231 0.51 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 1_11 - 110 tRNA_anti_2 PF13742.1 99 3.9e-06 17.5 0.0 1 1 2.4e-07 5.4e-06 17.1 0.0 34 85 17 76 11 84 0.79 # 9913 # 10242 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.412 2_4 - 246 TIGR00755 TIGR00755 256 4.3e-44 141.1 3.1 1 1 2.4e-45 5.2e-44 140.8 3.1 5 227 5 221 1 235 0.88 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_4 - 246 Methyltransf_23 PF13489.1 161 2.1e-07 21.6 0.0 1 1 2.7e-08 6e-07 20.1 0.0 7 60 16 85 9 225 0.82 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 1_11 - 110 tRNA_anti-codon PF01336.20 75 7.6e-06 16.6 0.0 1 1 5.5e-07 1.2e-05 15.9 0.0 23 60 38 75 37 94 0.88 # 9913 # 10242 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.412 2_4 - 246 Methyltransf_4 PF02390.12 197 3.3e-05 13.7 0.1 1 1 3e-06 6.7e-05 12.7 0.0 17 51 27 61 3 98 0.74 # 1337 # 2074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/55d4a105-9c1d-4813-ae6a-7578399295a1 # Target file: checkm_output/bins/pGCA_000191545.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000191545.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/55d4a105-9c1d-4813-ae6a-7578399295a1 checkm_output/bins/pGCA_000191545.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:58 2020 # [ok]