# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 342 N6_N4_Mtase PF01555.13 231 1.4e-41 133.5 1.3 1 1 8.9e-43 2.4e-41 132.7 1.3 1 229 46 328 46 330 0.81 # 23701 # 24726 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.319 1_8 - 320 AdoHcyase_NAD PF00670.16 162 1.7e-06 19.0 0.4 1 2 0.035 0.94 0.3 0.0 65 85 76 95 43 117 0.74 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_8 - 320 AdoHcyase_NAD PF00670.16 162 1.7e-06 19.0 0.4 2 2 4.5e-07 1.2e-05 16.3 0.1 21 122 147 251 144 266 0.82 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_23 - 337 MEDS PF14417.1 191 2.4e-05 14.5 0.0 1 1 2e-06 5.3e-05 13.4 0.0 132 170 221 259 212 264 0.90 # 22414 # 23424 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_8 - 320 NAD_binding_2 PF03446.10 163 1.8e-05 15.7 0.0 1 1 1.5e-06 4e-05 14.6 0.0 2 131 150 274 149 277 0.90 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_25 - 342 Methyltransf_26 PF13659.1 117 1.2e-12 39.0 0.0 1 2 2.1e-10 5.6e-09 27.2 0.0 50 116 25 101 10 102 0.80 # 23701 # 24726 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.319 1_25 - 342 Methyltransf_26 PF13659.1 117 1.2e-12 39.0 0.0 2 2 6.1e-05 0.0016 9.5 0.0 3 40 293 329 291 340 0.81 # 23701 # 24726 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.319 1_8 - 320 2-Hacid_dh_C PF02826.14 178 6.8e-57 182.5 0.0 1 2 0.021 0.56 0.4 0.0 25 45 57 77 38 104 0.67 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_8 - 320 2-Hacid_dh_C PF02826.14 178 6.8e-57 182.5 0.0 2 2 1.6e-57 4.4e-56 179.9 0.0 2 178 110 288 109 288 0.92 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_8 - 320 XdhC_C PF13478.1 136 4.4e-08 24.6 0.0 1 2 0.00025 0.0067 7.8 0.0 59 89 46 76 20 94 0.81 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_8 - 320 XdhC_C PF13478.1 136 4.4e-08 24.6 0.0 2 2 2e-06 5.4e-05 14.6 0.0 1 43 152 193 152 229 0.79 # 7243 # 8202 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.368 1_25 - 342 MTS PF05175.9 170 0.00022 11.7 0.0 1 1 2.2e-05 0.0006 10.3 0.0 89 155 36 117 17 127 0.82 # 23701 # 24726 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.319 1_25 - 342 Cons_hypoth95 PF03602.10 183 3.5e-08 24.1 0.4 1 2 4e-05 0.0011 9.4 0.1 81 129 11 60 2 73 0.62 # 23701 # 24726 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.319 1_25 - 342 Cons_hypoth95 PF03602.10 183 3.5e-08 24.1 0.4 2 2 5.4e-06 0.00015 12.3 0.0 36 81 284 328 279 340 0.68 # 23701 # 24726 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.319 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b59a75a3-b818-45e8-a6a6-ff6ce3709b0e # Target file: checkm_output/bins/pGCA_000189515.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000189515.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b59a75a3-b818-45e8-a6a6-ff6ce3709b0e checkm_output/bins/pGCA_000189515.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:57 2020 # [ok]