# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 234 cobW PF02492.14 178 0.00011 12.7 0.0 1 1 7.1e-06 0.00019 11.9 0.0 3 27 30 53 28 70 0.80 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 DUF87 PF01935.12 229 0.0008 10.3 4.6 1 2 0.00011 0.0031 8.4 1.3 25 44 29 48 24 50 0.90 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 DUF87 PF01935.12 229 0.0008 10.3 4.6 2 2 0.0041 0.11 3.3 0.1 89 170 81 160 51 215 0.72 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_22 PF13401.1 131 2e-07 22.3 1.7 1 1 1.1e-08 2.9e-07 21.8 0.6 3 120 26 176 23 190 0.66 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_15 PF13175.1 415 5e-10 29.9 8.0 1 2 6.1e-08 1.6e-06 18.3 0.7 8 57 15 113 2 137 0.56 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_15 PF13175.1 415 5e-10 29.9 8.0 2 2 6.4e-07 1.7e-05 15.0 2.5 371 413 139 182 114 184 0.80 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_17 PF13207.1 121 0.00029 12.8 0.2 1 1 2.6e-05 0.0007 11.5 0.2 3 19 31 47 30 170 0.70 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_21 PF13304.1 303 1.5e-15 48.9 10.1 1 2 2.2e-09 6e-08 24.0 2.0 2 42 30 70 29 119 0.62 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_21 PF13304.1 303 1.5e-15 48.9 10.1 2 2 5.6e-11 1.5e-09 29.2 2.8 179 303 92 185 78 185 0.75 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 Miro PF08477.8 119 0.0001 13.9 0.0 1 1 1.1e-05 0.00029 12.4 0.0 3 25 31 53 30 91 0.73 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 SMC_N PF02463.14 220 2.1e-11 34.5 0.9 1 2 4.8e-09 1.3e-07 22.1 0.2 10 61 13 61 1 93 0.77 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 SMC_N PF02463.14 220 2.1e-11 34.5 0.9 2 2 8.8e-06 0.00024 11.4 0.0 126 205 109 187 97 198 0.76 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_16 PF13191.1 185 0.00012 13.2 0.3 1 1 1.4e-05 0.00038 11.5 0.3 23 45 26 48 11 193 0.82 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_23 PF13476.1 202 2e-06 19.3 5.6 1 1 2.4e-07 3.3e-06 18.6 5.6 13 79 20 83 4 230 0.58 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 3_2 - 111 AAA_23 PF13476.1 202 0.00017 13.0 9.3 1 1 1.3e-05 0.00018 12.9 9.3 136 197 56 109 22 110 0.72 # 723 # 1055 # 1 # ID=3_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312 1_6 - 234 AAA_13 PF13166.1 712 0.00026 10.5 3.8 1 2 4.3e-05 0.0012 8.4 0.5 17 39 28 50 10 85 0.76 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_13 PF13166.1 712 0.00026 10.5 3.8 2 2 0.0014 0.037 3.4 0.2 527 570 139 180 128 190 0.82 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 TIGR03594 TIGR03594 432 1.2e-05 15.2 0.1 1 1 7.5e-07 2e-05 14.4 0.1 174 197 26 49 6 52 0.80 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_29 PF13555.1 62 4.5e-08 23.7 0.1 1 1 2.9e-09 7.8e-08 22.9 0.1 15 43 20 47 15 61 0.81 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 MMR_HSR1 PF01926.18 116 1.2e-06 19.6 0.5 1 1 5.7e-08 1.5e-06 19.2 0.4 3 37 31 61 29 176 0.85 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 DUF258 PF03193.11 161 1.5e-06 18.5 0.0 1 1 8.7e-08 2.4e-06 17.9 0.0 33 57 24 49 4 81 0.79 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 FtsK_SpoIIIE PF01580.13 205 1.7e-05 15.4 0.2 1 1 1.2e-06 3.4e-05 14.4 0.2 33 59 22 48 10 49 0.87 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 Dynamin_N PF00350.18 168 5.3e-05 14.1 0.0 1 1 4.1e-06 0.00011 13.1 0.0 2 21 31 50 30 56 0.92 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 ABC_tran PF00005.22 137 2.6e-21 67.4 0.0 1 1 1.5e-22 4.1e-21 66.8 0.0 5 135 21 148 17 150 0.83 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_10 PF12846.2 304 3e-06 17.9 1.2 1 2 4.8e-07 1.3e-05 15.8 0.2 3 29 29 55 27 72 0.86 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_10 PF12846.2 304 3e-06 17.9 1.2 2 2 0.025 0.68 0.3 0.0 127 169 114 165 78 192 0.61 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 1_6 - 234 AAA_28 PF13521.1 163 0.00034 11.6 0.0 1 1 2.2e-05 0.0006 10.8 0.0 3 19 31 47 29 67 0.88 # 4707 # 5408 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.329 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/04a379f4-589c-4e05-ae5b-360889142c92 # Target file: checkm_output/bins/pGCA_000185245.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000185245.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/04a379f4-589c-4e05-ae5b-360889142c92 checkm_output/bins/pGCA_000185245.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:58 2020 # [ok]