# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 219 MipZ PF09140.6 261 1.6e-19 60.4 0.5 1 2 3.7e-17 6.7e-16 48.5 0.1 2 138 2 117 1 131 0.82 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 MipZ PF09140.6 261 1.6e-19 60.4 0.5 2 2 0.0029 0.052 3.0 0.0 175 235 136 198 122 205 0.73 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 SRP54 PF00448.17 196 3e-05 14.0 0.1 1 1 3.1e-06 5.6e-05 13.1 0.1 11 103 11 97 8 141 0.81 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_7 - 736 Zeta_toxin PF06414.7 201 0.00011 11.9 0.0 1 2 4.4e-05 0.0008 9.0 0.0 11 32 228 249 220 267 0.80 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_7 - 736 Zeta_toxin PF06414.7 201 0.00011 11.9 0.0 2 2 0.042 0.75 -0.7 0.0 59 95 628 664 627 677 0.84 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_11 - 219 VirC1 PF07015.6 231 4.2e-16 49.2 0.8 1 1 4.2e-17 7.6e-16 48.3 0.8 3 190 2 189 1 202 0.82 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 AAA_18 PF13238.1 129 0.00019 12.2 1.5 1 2 6.4e-05 0.0011 9.7 0.3 8 81 11 102 10 139 0.61 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 AAA_18 PF13238.1 129 0.00019 12.2 1.5 2 2 0.018 0.33 1.8 0.1 55 89 151 182 113 201 0.72 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 CbiA PF01656.18 195 1.3e-26 83.6 0.5 1 1 1.1e-27 2.1e-26 83.0 0.5 1 182 3 169 3 187 0.73 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 AAA_14 PF13173.1 128 0.00014 12.3 2.1 1 1 1e-05 0.00018 11.9 0.5 13 68 12 84 10 101 0.65 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_7 - 736 TraG-D_C PF12696.2 128 7.2e-27 84.3 0.1 1 1 7.9e-28 1.4e-26 83.3 0.1 1 127 570 690 570 691 0.87 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_11 - 219 AAA_31 PF13614.1 157 4.2e-08 23.7 0.0 1 2 1.2e-06 2.2e-05 14.9 0.1 2 76 2 72 1 76 0.75 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_11 - 219 AAA_31 PF13614.1 157 4.2e-08 23.7 0.0 2 2 0.00017 0.003 8.0 0.0 112 151 69 110 63 116 0.84 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 1_7 - 736 AAA_10 PF12846.2 304 1.4e-10 31.5 0.2 1 1 1.2e-10 2.2e-09 27.6 0.2 3 296 235 645 233 652 0.66 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_7 - 736 TrwB_AAD_bind PF10412.4 386 4e-34 108.2 0.0 1 2 2.1e-07 3.7e-06 16.2 0.0 17 129 235 359 226 372 0.79 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_7 - 736 TrwB_AAD_bind PF10412.4 386 4e-34 108.2 0.0 2 2 9.2e-30 1.6e-28 89.7 0.1 160 379 484 702 469 709 0.86 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_7 - 736 T4SS-DNA_transf PF02534.9 469 1.5e-74 241.7 2.1 1 2 9.3e-29 1.7e-27 86.5 0.0 47 167 236 358 205 386 0.82 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_7 - 736 T4SS-DNA_transf PF02534.9 469 1.5e-74 241.7 2.1 2 2 3.9e-49 7.1e-48 153.7 1.5 215 459 483 726 446 733 0.91 # 3751 # 5958 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_18 - 532 UPF0079 PF02367.12 123 9.5e-05 12.6 0.2 1 2 0.0092 0.17 2.1 0.0 70 100 234 264 225 279 0.79 # 14124 # 15719 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.387 1_18 - 532 UPF0079 PF02367.12 123 9.5e-05 12.6 0.2 2 2 0.00017 0.0031 7.7 0.1 58 109 309 364 300 373 0.76 # 14124 # 15719 # -1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.387 1_11 - 219 AAA_25 PF13481.1 194 0.00018 11.4 0.1 1 1 2.8e-05 0.00051 9.9 0.1 42 59 10 27 9 45 0.82 # 9172 # 9828 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.390 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/46e0fd50-ad9e-4699-98cc-cac2d42bb078 # Target file: checkm_output/bins/pGCA_000185225.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000185225.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/46e0fd50-ad9e-4699-98cc-cac2d42bb078 checkm_output/bins/pGCA_000185225.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:51 2020 # [ok]