# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 366 3HCDH_N PF02737.13 180 1.6e-06 19.0 0.1 1 1 1.2e-07 3.4e-06 17.9 0.1 2 85 71 157 70 160 0.82 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_7 - 140 GIDA PF01134.17 392 7.6e-05 12.7 0.7 1 1 3.7e-06 0.0001 12.3 0.7 1 29 87 115 87 131 0.86 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_8 - 366 Pyr_redox_2 PF07992.9 201 1.2e-25 81.6 0.0 1 1 4.3e-26 4e-25 79.9 0.0 81 197 6 208 1 212 0.91 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_2 - 252 Pyr_redox_2 PF07992.9 201 2.9e-09 28.2 0.3 1 2 0.0036 0.033 5.1 0.1 66 120 17 66 3 71 0.76 # 163 # 918 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 2_2 - 252 Pyr_redox_2 PF07992.9 201 2.9e-09 28.2 0.3 2 2 7.2e-08 6.8e-07 20.4 0.0 163 198 74 108 70 110 0.85 # 163 # 918 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 2_7 - 140 Pyr_redox_2 PF07992.9 201 6.8e-08 23.7 0.3 1 1 1.4e-08 1.3e-07 22.8 0.3 1 39 87 121 87 134 0.81 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_7 - 140 Usp PF00582.21 140 2.7e-05 15.5 0.1 1 1 1.2e-06 3.3e-05 15.2 0.1 63 114 30 96 16 128 0.75 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_4 - 131 AAA_15 PF13175.1 415 5.5e-06 16.7 2.3 1 1 3.2e-07 8.9e-06 16.0 2.3 291 411 9 112 2 116 0.68 # 1893 # 2285 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 4_1 - 227 AAA_17 PF13207.1 121 1.3e-06 20.4 1.0 1 1 1.2e-07 3.3e-06 19.1 1.0 23 111 26 122 21 135 0.84 # 42 # 722 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_4 - 131 AAA_21 PF13304.1 303 2.6e-11 35.0 0.6 1 1 1e-12 2.8e-11 34.9 0.6 197 301 21 115 1 117 0.68 # 1893 # 2285 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_7 - 140 NAD_binding_8 PF13450.1 68 0.0001 13.5 0.1 1 1 6.6e-06 0.00019 12.6 0.1 1 37 90 126 90 137 0.83 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_4 - 131 SMC_N PF02463.14 220 1.9e-07 21.6 1.3 1 1 8.1e-09 2.3e-07 21.3 1.3 105 213 25 127 4 130 0.69 # 1893 # 2285 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 1_4 - 131 AAA_13 PF13166.1 712 1.1e-06 18.4 0.9 1 1 6.5e-08 1.8e-06 17.7 0.9 499 578 52 120 10 127 0.81 # 1893 # 2285 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_2 - 252 HI0933_like PF03486.9 409 1.4e-06 18.1 0.0 1 1 1.6e-07 2.2e-06 17.4 0.0 110 169 10 69 4 113 0.85 # 163 # 918 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 2_7 - 140 HI0933_like PF03486.9 409 9.9e-06 15.2 1.3 1 1 9.8e-07 1.4e-05 14.8 0.9 1 33 86 118 86 124 0.92 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_7 - 140 FAD_binding_2 PF00890.19 417 9.9e-10 28.8 1.8 1 1 5.2e-11 1.4e-09 28.3 1.8 1 33 87 119 87 127 0.91 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_7 - 140 Thi4 PF01946.12 230 5.5e-05 13.4 0.1 1 1 2.7e-06 7.7e-05 12.9 0.1 17 50 85 118 74 130 0.85 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_8 - 366 Pyr_redox_3 PF13738.1 203 1.1e-12 39.5 0.0 1 2 2.7e-08 2.5e-07 22.0 0.0 117 200 22 101 7 104 0.83 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_8 - 366 Pyr_redox_3 PF13738.1 203 1.1e-12 39.5 0.0 2 2 3.1e-06 2.9e-05 15.3 0.1 82 147 109 175 105 208 0.70 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_2 - 252 Pyr_redox_3 PF13738.1 203 0.00016 12.9 0.0 1 1 6e-05 0.00056 11.1 0.0 94 163 21 95 9 110 0.75 # 163 # 918 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 2_7 - 140 Pyr_redox_3 PF13738.1 203 0.00028 12.1 0.3 1 2 7.2e-05 0.00067 10.8 0.3 167 198 85 116 33 120 0.74 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_7 - 140 Pyr_redox_3 PF13738.1 203 0.00028 12.1 0.3 2 2 9.6e-05 0.0009 10.4 0.3 1 38 89 124 89 135 0.80 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_8 - 366 2-Hacid_dh_C PF02826.14 178 0.00017 11.9 0.1 1 2 2.5e-05 0.00071 9.8 0.0 37 70 69 102 54 122 0.82 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_8 - 366 2-Hacid_dh_C PF02826.14 178 0.00017 11.9 0.1 2 2 0.038 1.1 -0.5 0.0 47 108 111 173 110 191 0.61 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_8 - 366 XdhC_C PF13478.1 136 4.4e-05 14.9 0.0 1 1 2.6e-06 7.4e-05 14.2 0.0 1 49 71 120 71 139 0.79 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 1_4 - 131 ABC_tran PF00005.22 137 4.2e-16 50.6 0.2 1 1 2.2e-17 6.2e-16 50.1 0.2 65 136 2 81 1 82 0.86 # 1893 # 2285 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_8 - 366 K_oxygenase PF13434.1 341 2.8e-10 30.6 0.3 1 2 4.4e-09 1.2e-07 22.0 0.0 140 232 23 108 13 123 0.83 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_8 - 366 K_oxygenase PF13434.1 341 2.8e-10 30.6 0.3 2 2 0.0002 0.0055 6.7 0.2 120 160 129 169 117 205 0.67 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_8 - 366 UDPG_MGDP_dh_N PF03721.9 185 1.7e-05 15.4 0.1 1 1 1.3e-06 3.7e-05 14.3 0.1 2 40 70 108 69 175 0.74 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 1_4 - 131 SbcCD_C PF13558.1 90 4.4e-06 17.7 0.0 1 1 2.5e-06 6.9e-05 13.9 0.0 23 88 44 96 21 98 0.79 # 1893 # 2285 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_7 - 140 FAD_oxidored PF12831.2 428 9.9e-09 25.7 1.2 1 1 5.7e-10 1.6e-08 25.1 1.2 1 40 87 126 87 131 0.92 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_7 - 140 DAO PF01266.19 358 1.2e-05 15.4 1.4 1 2 0.087 2.4 -2.1 0.0 76 105 33 61 19 69 0.56 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_7 - 140 DAO PF01266.19 358 1.2e-05 15.4 1.4 2 2 5.1e-07 1.4e-05 15.2 0.4 1 35 87 121 87 126 0.95 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 2_8 - 366 Pyr_redox PF00070.22 80 1.9e-22 70.7 0.1 1 1 4.5e-23 4.2e-22 69.5 0.1 1 72 70 141 70 152 0.93 # 3882 # 4979 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 2_2 - 252 Pyr_redox PF00070.22 80 2.6e-06 19.0 0.1 1 1 7.3e-07 6.8e-06 17.6 0.1 37 72 6 41 2 50 0.89 # 163 # 918 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 2_7 - 140 Pyr_redox PF00070.22 80 0.00015 13.3 0.9 1 1 2.8e-05 0.00026 12.5 0.4 2 31 88 117 87 124 0.95 # 3336 # 3755 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.488 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8dde3e8e-ec63-4e67-880e-62d3acf3790c # Target file: checkm_output/bins/pGCA_000160335.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000160335.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8dde3e8e-ec63-4e67-880e-62d3acf3790c checkm_output/bins/pGCA_000160335.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:44 2020 # [ok]