# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_11 - 640 FeoB_N PF02421.13 156 1.8e-05 16.1 0.1 1 1 1.1e-06 6e-05 14.4 0.1 32 120 53 135 50 159 0.84 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_21 - 295 MipZ PF09140.6 261 3.8e-13 41.1 0.3 1 2 3.2e-10 1.7e-08 25.8 0.0 3 74 4 74 2 104 0.80 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_21 - 295 MipZ PF09140.6 261 3.8e-13 41.1 0.3 2 2 2.2e-06 0.00012 13.3 0.0 70 122 121 170 98 179 0.74 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_21 - 295 YhjQ PF06564.7 244 2.6e-09 28.8 0.0 1 1 2.2e-08 1.2e-06 20.1 0.0 8 150 8 179 1 184 0.63 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_14 - 306 DUF87 PF01935.12 229 0.00084 11.2 1.3 1 1 5.1e-05 0.0027 9.5 1.3 29 58 37 65 32 66 0.83 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 SRP54 PF00448.17 196 6.5e-06 17.7 0.1 1 1 3.7e-07 2e-05 16.1 0.1 3 44 33 74 31 77 0.91 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_24 - 670 N6_N4_Mtase PF01555.13 231 4.6e-42 136.0 2.6 1 1 2.4e-43 1.3e-41 134.6 2.6 1 229 204 535 204 537 0.86 # 22835 # 24844 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_6 - 153 AAA_17 PF13207.1 121 0.00036 13.4 0.0 1 1 1.1e-05 0.00062 12.7 0.0 12 62 7 60 7 127 0.64 # 5141 # 5599 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_14 - 306 AAA_21 PF13304.1 303 8.1e-13 40.9 0.4 1 2 3.3e-07 1.8e-05 16.8 0.3 3 25 35 69 33 114 0.72 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 AAA_21 PF13304.1 303 8.1e-13 40.9 0.4 2 2 5.6e-09 3e-07 22.6 0.0 226 297 121 189 91 194 0.72 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 2_11 - 640 Miro PF08477.8 119 6.8e-08 25.1 0.0 1 1 2.5e-09 1.3e-07 24.2 0.0 7 119 11 131 5 131 0.88 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_14 - 306 MobB PF03205.9 140 2.1e-05 16.3 0.0 1 1 1.2e-06 6.4e-05 14.7 0.0 2 34 33 65 32 73 0.91 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_21 - 295 ArsA_ATPase PF02374.10 305 3e-14 44.7 0.4 1 1 2e-15 1.1e-13 42.9 0.2 9 137 10 157 2 161 0.60 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_14 - 306 SMC_N PF02463.14 220 5.1e-05 14.6 0.9 1 2 0.00023 0.012 6.8 0.2 27 45 34 52 12 61 0.73 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 SMC_N PF02463.14 220 5.1e-05 14.6 0.9 2 2 0.00032 0.017 6.3 0.0 146 200 139 192 102 209 0.68 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_21 - 295 Fer4_NifH PF00142.13 273 7.8e-08 23.8 0.1 1 1 3.8e-09 2.1e-07 22.4 0.1 5 54 5 56 2 83 0.79 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_14 - 306 AAA_16 PF13191.1 185 0.00016 13.7 0.6 1 2 1.3e-05 0.00068 11.7 0.2 22 57 29 65 16 155 0.86 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 AAA_16 PF13191.1 185 0.00016 13.7 0.6 2 2 0.044 2.4 0.1 0.0 35 58 180 205 177 276 0.70 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 AAA_23 PF13476.1 202 1e-08 27.8 0.0 1 1 2.4e-10 1.3e-08 27.4 0.0 5 114 13 141 12 227 0.67 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_31 - 144 adh_short PF00106.20 167 2.5e-05 16.2 0.4 1 1 5.8e-07 3.1e-05 15.9 0.4 11 115 22 128 16 134 0.87 # 31254 # 31685 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_21 - 295 CbiA PF01656.18 195 9.8e-33 105.2 0.2 1 1 2.4e-34 1.3e-32 104.8 0.2 5 193 8 249 4 251 0.80 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 2_11 - 640 TIGR03594 TIGR03594 432 1.1e-09 29.5 0.1 1 3 0.022 1.2 -0.3 0.0 176 211 4 42 1 46 0.79 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 2_11 - 640 TIGR03594 TIGR03594 432 1.1e-09 29.5 0.1 2 3 3.4e-09 1.8e-07 22.1 0.1 29 124 49 136 41 154 0.84 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 2_11 - 640 TIGR03594 TIGR03594 432 1.1e-09 29.5 0.1 3 3 0.0017 0.091 3.4 0.0 305 347 197 239 186 256 0.85 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_14 - 306 AAA_29 PF13555.1 62 2.7e-07 22.2 0.1 1 2 7.7e-07 4.1e-05 15.1 0.2 14 43 20 51 12 67 0.70 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 AAA_29 PF13555.1 62 2.7e-07 22.2 0.1 2 2 0.0018 0.098 4.3 0.0 7 29 165 187 160 190 0.89 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 2_11 - 640 MMR_HSR1 PF01926.18 116 1.3e-08 26.9 0.0 1 1 4.4e-10 2.4e-08 26.0 0.0 2 116 6 129 5 129 0.68 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_14 - 306 DUF258 PF03193.11 161 0.00014 13.1 0.0 1 1 5e-06 0.00027 12.2 0.0 22 66 17 62 3 76 0.82 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_21 - 295 AAA_31 PF13614.1 157 5.6e-11 34.6 0.3 1 1 4.8e-12 2.6e-10 32.5 0.2 9 130 10 159 5 185 0.82 # 20775 # 21659 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_14 - 306 NTPase_1 PF03266.10 168 0.00034 12.4 0.1 1 2 0.00012 0.0064 8.2 0.0 6 31 38 63 34 74 0.88 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 NTPase_1 PF03266.10 168 0.00034 12.4 0.1 2 2 0.011 0.59 1.8 0.0 90 144 144 201 115 220 0.75 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 AAA_33 PF13671.1 143 8.1e-05 14.6 0.0 1 1 4.4e-06 0.00024 13.1 0.0 4 33 36 84 33 212 0.68 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_24 - 670 Methyltransf_26 PF13659.1 117 4.3e-05 15.6 0.0 1 2 0.0079 0.43 2.7 0.0 68 112 201 253 138 258 0.78 # 22835 # 24844 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_24 - 670 Methyltransf_26 PF13659.1 117 4.3e-05 15.6 0.0 2 2 2.9e-05 0.0015 10.6 0.0 4 42 500 537 497 653 0.77 # 22835 # 24844 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_14 - 306 ABC_tran PF00005.22 137 5.6e-29 93.2 0.0 1 2 7.1e-30 3.8e-28 90.5 0.0 1 137 21 160 21 160 0.95 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 ABC_tran PF00005.22 137 5.6e-29 93.2 0.0 2 2 0.043 2.3 0.6 0.0 22 67 180 232 179 282 0.56 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_24 - 670 Cons_hypoth95 PF03602.10 183 2.3e-06 19.1 0.0 1 2 1.8e-05 0.00098 10.6 0.0 100 129 188 218 162 241 0.71 # 22835 # 24844 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_24 - 670 Cons_hypoth95 PF03602.10 183 2.3e-06 19.1 0.0 2 2 0.00049 0.027 5.9 0.0 35 86 489 539 483 555 0.68 # 22835 # 24844 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_14 - 306 AAA_10 PF12846.2 304 8.8e-06 17.3 0.1 1 2 7.3e-07 4e-05 15.2 0.1 6 100 36 130 32 200 0.70 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_14 - 306 AAA_10 PF12846.2 304 8.8e-06 17.3 0.1 2 2 0.041 2.2 -0.4 0.0 11 34 179 203 177 215 0.70 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_25 - 878 ResIII PF04851.10 184 1.2e-27 88.9 0.5 1 1 2.3e-29 1.2e-27 88.9 0.5 1 182 44 239 44 241 0.84 # 24844 # 27477 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 2_11 - 640 GTP_EFTU_D2 PF03144.20 74 8.1e-08 24.4 0.0 1 1 3.4e-09 1.8e-07 23.3 0.0 4 73 266 327 263 328 0.86 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_25 - 878 DEAD PF00270.24 169 3.7e-06 18.6 0.0 1 1 1.8e-07 9.6e-06 17.2 0.0 14 165 70 243 55 246 0.69 # 24844 # 27477 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 1_14 - 306 ArgK PF03308.11 267 4e-05 14.5 0.1 1 1 1.5e-06 8.3e-05 13.4 0.1 29 64 31 66 18 70 0.88 # 12856 # 13773 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 2_11 - 640 GTP_EFTU PF00009.22 188 1.5e-63 205.6 0.1 1 1 3.8e-65 2.1e-63 205.2 0.1 2 186 2 238 1 240 0.92 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 2_11 - 640 EFG_IV PF03764.13 120 1.6e-25 81.0 0.0 1 1 5.7e-27 3.1e-25 80.1 0.0 1 119 416 531 416 532 0.98 # 7673 # 9592 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.531 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4b9abdd8-2f5f-4974-8b07-04c205c5dc93 # Target file: checkm_output/bins/pGCA_000159455.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000159455.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4b9abdd8-2f5f-4974-8b07-04c205c5dc93 checkm_output/bins/pGCA_000159455.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:42 2020 # [ok]