# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 104 Seryl_tRNA_N PF02403.17 108 0.0003 10.2 11.4 1 1 8.8e-05 0.00071 9.0 11.3 22 82 18 77 9 102 0.68 # 5995 # 6306 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_3 - 547 AAA_17 PF13207.1 121 3.6e-05 14.0 0.0 1 1 1.7e-05 0.00013 12.1 0.0 1 49 332 376 332 439 0.67 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_21 PF13304.1 303 1.7e-10 30.6 7.0 1 1 2.2e-11 1.7e-10 30.6 7.0 2 295 333 501 332 502 0.68 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 MobB PF03205.9 140 6.5e-05 12.0 0.1 1 1 1.7e-05 0.00014 11.0 0.1 2 21 332 351 331 363 0.87 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 SMC_N PF02463.14 220 2e-06 16.5 4.9 1 2 0.041 0.33 -0.6 0.1 135 165 189 285 121 286 0.60 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 SMC_N PF02463.14 220 2e-06 16.5 4.9 2 2 3.9e-07 3.1e-06 15.8 1.7 23 211 329 516 317 522 0.68 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_16 PF13191.1 185 5.8e-05 12.4 0.0 1 1 1.4e-05 0.00011 11.5 0.0 26 120 332 412 319 471 0.60 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_23 PF13476.1 202 0.0032 7.1 20.6 1 2 0.077 0.61 -0.4 2.3 125 150 155 179 51 305 0.69 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_23 PF13476.1 202 0.0032 7.1 20.6 2 2 1.5e-05 0.00012 11.8 10.7 10 127 320 430 303 545 0.58 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_18 PF13238.1 129 5.4e-05 12.9 2.5 1 2 0.04 0.32 0.7 0.1 28 83 160 205 140 237 0.68 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_18 PF13238.1 129 5.4e-05 12.9 2.5 2 2 2.1e-05 0.00017 11.3 0.2 3 68 335 434 334 517 0.67 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_14 PF13173.1 128 0.00019 10.7 4.8 1 2 0.074 0.59 -0.6 0.5 27 50 160 188 141 214 0.61 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_14 PF13173.1 128 0.00019 10.7 4.8 2 2 1.8e-05 0.00015 11.1 0.4 2 46 330 375 329 503 0.83 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 AAA_29 PF13555.1 62 1.5e-05 13.9 0.0 1 1 4e-06 3.2e-05 12.9 0.0 17 40 325 347 319 366 0.77 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 Dynamin_N PF00350.18 168 1.8e-05 13.9 0.2 1 1 5.3e-06 4.2e-05 12.7 0.2 2 34 334 366 333 501 0.80 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 1_3 - 547 ABC_tran PF00005.22 137 6e-27 84.0 0.0 1 1 1.3e-27 1.1e-26 83.2 0.0 2 136 321 473 320 474 0.81 # 1906 # 3546 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TATAA;rbs_spacer=11bp;gc_cont=0.312 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8230b707-30d0-4af9-923c-1a0a440e02df # Target file: checkm_output/bins/pGCA_000148875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000148875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8230b707-30d0-4af9-923c-1a0a440e02df checkm_output/bins/pGCA_000148875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:38 2020 # [ok]