# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_45 - 399 ABC_ATPase PF09818.4 448 2e-06 18.5 0.3 1 2 0.0018 0.094 3.1 0.1 241 266 51 77 40 85 0.88 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 ABC_ATPase PF09818.4 448 2e-06 18.5 0.3 2 2 1.8e-06 8.9e-05 13.1 0.0 322 372 165 214 158 254 0.82 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_51 - 287 MipZ PF09140.6 261 3.5e-11 34.6 0.2 1 2 8.8e-10 4.5e-08 24.4 0.2 2 57 18 72 17 102 0.77 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_51 - 287 MipZ PF09140.6 261 3.5e-11 34.6 0.2 2 2 7.5e-05 0.0038 8.2 0.0 76 122 119 165 95 178 0.80 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_51 - 287 YhjQ PF06564.7 244 9.4e-09 26.9 0.0 1 1 3.5e-10 1.8e-08 26.0 0.0 10 147 25 171 17 179 0.75 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_20 - 895 Usp PF00582.21 140 3.2e-10 32.3 0.0 1 1 1.7e-11 8.9e-10 30.9 0.0 3 133 238 360 236 363 0.87 # 19194 # 21878 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_45 - 399 AAA_22 PF13401.1 131 1e-06 20.9 0.3 1 3 2.2e-05 0.0011 11.0 0.0 4 26 55 77 52 119 0.87 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_22 PF13401.1 131 1e-06 20.9 0.3 2 3 0.0012 0.06 5.5 0.1 79 124 176 224 121 231 0.83 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_22 PF13401.1 131 1e-06 20.9 0.3 3 3 0.038 2 0.6 0.0 62 99 338 378 296 392 0.70 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_15 PF13175.1 415 1.3e-06 19.5 0.9 1 2 1.3e-05 0.00065 10.7 0.3 3 49 5 82 3 112 0.63 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_15 PF13175.1 415 1.3e-06 19.5 0.9 2 2 0.00013 0.0066 7.4 0.0 371 407 184 221 165 227 0.87 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_17 PF13207.1 121 1.3e-05 18.0 0.1 1 2 2.3e-06 0.00012 14.9 0.0 3 43 59 97 57 150 0.70 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_17 PF13207.1 121 1.3e-05 18.0 0.1 2 2 0.084 4.3 0.2 0.2 15 62 176 213 175 275 0.61 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_21 PF13304.1 303 4e-10 32.0 0.3 1 2 2.8e-06 0.00014 13.8 0.2 2 40 58 94 57 125 0.70 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_21 PF13304.1 303 4e-10 32.0 0.3 2 2 4.4e-07 2.3e-05 16.4 0.0 220 285 149 211 96 227 0.78 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_51 - 287 ArsA_ATPase PF02374.10 305 2.7e-09 28.4 0.2 1 1 1.3e-10 6.8e-09 27.1 0.2 8 136 24 151 17 154 0.75 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_45 - 399 G-alpha PF00503.15 389 0.00038 11.1 0.0 1 1 1.2e-05 0.00063 10.4 0.0 62 87 59 84 31 131 0.84 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 SMC_N PF02463.14 220 6.3e-05 14.2 4.7 1 1 2.8e-06 0.00014 13.0 2.3 26 197 57 222 46 244 0.78 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_51 - 287 Fer4_NifH PF00142.13 273 4.4e-08 24.5 2.0 1 2 1.2e-09 6e-08 24.1 0.3 8 57 25 76 18 97 0.83 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_51 - 287 Fer4_NifH PF00142.13 273 4.4e-08 24.5 2.0 2 2 0.042 2.1 -0.7 0.1 201 248 197 243 181 270 0.65 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_45 - 399 Arch_ATPase PF01637.13 234 0.00012 13.7 0.6 1 2 0.00021 0.011 7.4 0.0 20 42 55 77 49 105 0.84 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 Arch_ATPase PF01637.13 234 0.00012 13.7 0.6 2 2 0.0034 0.17 3.4 0.0 121 163 186 223 173 226 0.86 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_16 PF13191.1 185 3.1e-05 16.0 0.2 1 1 1.6e-06 8e-05 14.6 0.2 22 50 53 81 46 222 0.92 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_23 PF13476.1 202 9.5e-06 18.0 0.0 1 1 4.5e-07 2.3e-05 16.7 0.0 18 40 54 76 40 126 0.87 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_18 PF13238.1 129 8.3e-07 21.4 0.2 1 2 1.3e-05 0.00068 11.9 0.0 2 42 59 103 59 136 0.75 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_18 PF13238.1 129 8.3e-07 21.4 0.2 2 2 0.00044 0.022 7.0 0.1 46 94 191 237 175 269 0.85 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_51 - 287 CbiA PF01656.18 195 9e-30 95.5 0.5 1 1 2.2e-31 1.1e-29 95.1 0.5 1 190 19 240 19 245 0.81 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_45 - 399 AAA_29 PF13555.1 62 7.2e-06 17.5 0.1 1 1 3.3e-07 1.7e-05 16.3 0.1 16 41 49 73 44 85 0.78 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 MMR_HSR1 PF01926.18 116 0.00057 11.8 0.9 1 1 4e-05 0.002 10.1 0.3 2 20 58 76 57 222 0.83 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 DUF258 PF03193.11 161 6.6e-06 17.4 0.3 1 1 3.6e-07 1.8e-05 15.9 0.2 23 66 42 86 22 107 0.75 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_51 - 287 AAA_31 PF13614.1 157 6.6e-08 24.6 0.3 1 1 8.9e-09 4.6e-07 21.9 0.3 9 135 25 159 18 179 0.64 # 52336 # 53196 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_45 - 399 AAA_33 PF13671.1 143 0.00019 13.3 0.0 1 1 8.4e-06 0.00043 12.1 0.0 1 19 57 75 57 115 0.89 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_30 PF13604.1 196 4.7e-05 15.0 0.0 1 1 3.4e-06 0.00018 13.1 0.0 15 48 52 85 46 104 0.77 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 ABC_tran PF00005.22 137 4.6e-34 109.6 0.0 1 1 1.7e-35 8.7e-34 108.7 0.0 2 136 46 193 45 194 0.93 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_19 PF13245.1 76 8.6e-05 14.3 0.0 1 1 4.4e-06 0.00022 12.9 0.0 9 37 54 81 47 99 0.84 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_10 PF12846.2 304 0.00025 12.4 0.3 1 2 2.2e-05 0.0011 10.3 0.0 4 23 58 77 55 88 0.83 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_10 PF12846.2 304 0.00025 12.4 0.3 2 2 0.048 2.4 -0.6 0.0 215 263 178 226 96 248 0.63 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 SbcCD_C PF13558.1 90 0.00015 13.6 0.1 1 1 6.4e-06 0.00033 12.6 0.1 61 88 181 208 163 210 0.79 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_24 PF13479.1 213 0.00037 12.0 0.0 1 2 0.006 0.31 2.5 0.0 6 23 58 75 55 86 0.87 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_45 - 399 AAA_24 PF13479.1 213 0.00037 12.0 0.0 2 2 0.00028 0.014 6.9 0.0 111 137 200 226 198 242 0.84 # 46747 # 47943 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b61a4758-1495-452b-992b-b62e1bae81bb # Target file: checkm_output/bins/pGCA_000148815.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000148815.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b61a4758-1495-452b-992b-b62e1bae81bb checkm_output/bins/pGCA_000148815.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:39 2020 # [ok]