# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 272 cobW PF02492.14 178 0.00027 11.2 0.8 1 1 1.8e-05 0.0004 10.7 0.1 113 171 94 156 65 162 0.77 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 FeoB_N PF02421.13 156 6.7e-05 13.0 4.1 1 3 4.4e-05 0.001 9.2 0.0 3 24 30 51 28 56 0.89 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 FeoB_N PF02421.13 156 6.7e-05 13.0 4.1 2 3 0.095 2.2 -1.6 0.0 94 133 94 131 84 146 0.57 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 FeoB_N PF02421.13 156 6.7e-05 13.0 4.1 3 3 0.0016 0.038 4.1 1.0 86 131 162 207 131 208 0.77 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_19 - 272 AAA_22 PF13401.1 131 1.1e-28 90.9 0.0 1 1 1.6e-29 1.9e-28 90.1 0.0 2 131 25 171 24 171 0.86 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 AAA_22 PF13401.1 131 9.4e-07 19.9 1.0 1 1 2.7e-07 3.1e-06 18.2 1.0 4 129 27 195 24 197 0.73 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_15 PF13175.1 415 5.1e-09 26.4 8.7 1 2 4.7e-06 0.00011 12.1 6.6 8 110 12 106 4 123 0.60 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_15 PF13175.1 415 5.1e-09 26.4 8.7 2 2 4.6e-07 1.1e-05 15.4 2.8 291 414 87 193 62 194 0.67 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_17 PF13207.1 121 6.5e-06 17.9 0.2 1 1 8e-07 1.8e-05 16.4 0.2 3 56 31 86 30 207 0.73 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_21 PF13304.1 303 5.6e-17 53.4 5.1 1 1 7.2e-16 1.7e-14 45.3 5.1 3 301 31 193 29 195 0.88 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 Zeta_toxin PF06414.7 201 3.1e-05 14.0 0.0 1 1 1.9e-06 4.4e-05 13.4 0.0 14 62 25 74 15 96 0.82 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 SMC_N PF02463.14 220 7.5e-08 22.6 6.2 1 1 1.2e-08 2.7e-07 20.8 6.2 19 213 21 205 4 208 0.75 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_16 PF13191.1 185 4.1e-05 14.5 0.4 1 1 3e-06 6.8e-05 13.7 0.4 24 42 27 45 17 198 0.82 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_23 PF13476.1 202 8.3e-05 13.8 9.5 1 1 2.1e-05 0.00048 11.3 9.5 10 131 17 138 9 198 0.58 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_18 PF13238.1 129 0.00024 12.3 4.4 1 1 5.4e-05 0.0012 10.0 4.4 3 64 32 120 31 203 0.63 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_13 PF13166.1 712 8.2e-08 21.9 3.1 1 2 0.00016 0.0036 6.5 1.0 23 75 34 83 13 119 0.63 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_13 PF13166.1 712 8.2e-08 21.9 3.1 2 2 2.9e-07 6.7e-06 15.5 0.3 500 578 131 198 99 205 0.82 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_29 PF13555.1 62 8.5e-08 22.6 0.1 1 1 6.5e-09 1.5e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_19 - 272 AAA PF00004.24 132 1.3e-06 19.5 0.1 1 2 0.00028 0.0065 7.5 0.0 3 14 32 43 31 58 0.89 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_19 - 272 AAA PF00004.24 132 1.3e-06 19.5 0.1 2 2 6.1e-05 0.0014 9.7 0.0 34 111 110 167 65 189 0.83 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_8 - 209 MMR_HSR1 PF01926.18 116 2.3e-06 18.5 2.4 1 1 2.3e-07 5.2e-06 17.3 2.4 3 100 31 142 29 204 0.63 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 DUF258 PF03193.11 161 1.5e-09 28.1 0.1 1 1 1e-10 2.4e-09 27.4 0.1 13 67 4 59 1 70 0.87 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 NTPase_1 PF03266.10 168 5.9e-05 13.6 0.4 1 2 0.0012 0.028 5.0 0.0 3 19 31 47 29 57 0.86 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 NTPase_1 PF03266.10 168 5.9e-05 13.6 0.4 2 2 0.00029 0.0066 7.0 0.2 74 136 128 192 104 207 0.74 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 Dynamin_N PF00350.18 168 6.1e-05 13.7 2.5 1 1 8e-06 0.00018 12.2 2.5 2 30 31 59 31 196 0.69 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 ABC_tran PF00005.22 137 2.2e-37 119.2 0.1 1 1 1.3e-38 3.1e-37 118.8 0.1 1 136 17 159 17 160 0.93 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 AAA_10 PF12846.2 304 3.8e-05 14.0 0.2 1 1 3e-06 7e-05 13.1 0.1 3 22 29 48 27 63 0.81 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 209 SbcCD_C PF13558.1 90 5.2e-06 17.2 0.0 1 1 3e-06 6.9e-05 13.6 0.0 11 88 110 174 102 176 0.81 # 5075 # 5701 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_19 - 272 DEAD PF00270.24 169 0.00041 10.7 1.6 1 1 4.7e-05 0.0011 9.3 1.0 113 143 121 151 30 162 0.80 # 15065 # 15880 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/33577f23-9e44-450d-bcc9-70d7e33f7cd9 # Target file: checkm_output/bins/pGCA_000144955.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000144955.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/33577f23-9e44-450d-bcc9-70d7e33f7cd9 checkm_output/bins/pGCA_000144955.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:36 2020 # [ok]