# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 741 ABC_ATPase PF09818.4 448 6.3e-08 22.4 0.5 1 2 0.049 1.2 -1.6 0.1 240 262 506 529 502 533 0.84 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 ABC_ATPase PF09818.4 448 6.3e-08 22.4 0.5 2 2 6.8e-09 1.6e-07 21.0 0.0 297 383 595 680 588 695 0.87 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_22 PF13401.1 131 1.5e-07 22.5 0.5 1 1 8.5e-08 2.1e-06 18.9 0.5 7 106 514 661 510 679 0.52 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_13 - 177 Stn1 PF10451.4 256 2.1e-05 14.3 0.9 1 1 1.2e-06 2.9e-05 13.9 0.9 149 219 104 173 81 175 0.86 # 7195 # 7725 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.252 1_24 - 741 SRP54 PF00448.17 196 0.00016 12.1 0.3 1 1 2.2e-05 0.00054 10.3 0.1 3 35 513 545 511 552 0.83 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_17 PF13207.1 121 2.1e-08 26.0 0.0 1 1 2.1e-09 5.1e-08 24.7 0.0 1 44 513 567 513 695 0.61 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 MobB PF03205.9 140 4.2e-05 14.2 0.0 1 1 4.8e-06 0.00012 12.8 0.0 3 23 514 534 513 544 0.89 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 T2SE PF00437.15 272 0.00017 11.4 0.2 1 1 1.8e-05 0.00042 10.1 0.0 106 159 489 542 463 562 0.80 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 SMC_N PF02463.14 220 3.9e-08 23.6 1.1 1 1 2.7e-08 6.6e-07 19.6 1.0 135 211 587 692 493 697 0.66 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_16 PF13191.1 185 1.6e-05 15.8 0.0 1 1 1.5e-06 3.7e-05 14.7 0.0 25 57 512 545 501 580 0.82 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_18 PF13238.1 129 8.3e-07 20.3 0.1 1 1 9e-08 2.2e-06 18.9 0.1 1 29 514 552 514 596 0.71 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_23 - 477 AAA_13 PF13166.1 712 0.0014 7.9 44.0 1 2 0.025 0.6 -0.8 22.5 316 433 107 232 96 235 0.49 # 13711 # 15141 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.243 1_23 - 477 AAA_13 PF13166.1 712 0.0014 7.9 44.0 2 2 6.5e-07 1.5e-05 14.4 27.8 283 435 167 330 163 336 0.77 # 13711 # 15141 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.243 1_24 - 741 AAA_14 PF13173.1 128 0.00013 12.8 0.9 1 1 2e-05 0.00047 11.0 0.9 4 82 513 606 510 678 0.71 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_29 PF13555.1 62 2.1e-05 14.9 0.1 1 1 2.1e-06 5e-05 13.8 0.1 17 39 506 527 501 532 0.83 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA PF00004.24 132 7.5e-07 20.3 0.6 1 1 2.5e-07 5.9e-06 17.4 0.6 2 98 515 673 514 695 0.72 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 Sigma54_activat PF00158.21 168 9.3e-05 12.8 0.0 1 1 8.3e-06 0.0002 11.8 0.0 13 53 502 542 495 569 0.71 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 DUF258 PF03193.11 161 1.9e-05 14.8 0.0 1 1 1.7e-06 4.1e-05 13.7 0.0 26 66 501 542 481 558 0.85 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_33 PF13671.1 143 9.8e-08 22.9 0.0 1 1 7.1e-09 1.7e-07 22.1 0.0 2 96 514 608 514 616 0.73 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 ABC_tran PF00005.22 137 1.3e-41 133.0 0.1 1 1 9.8e-43 2.4e-41 132.2 0.1 1 137 501 650 501 650 0.98 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_10 PF12846.2 304 4.3e-06 17.2 0.3 1 1 7.2e-07 1.7e-05 15.2 0.2 5 38 515 553 512 725 0.63 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 PduV-EutP PF10662.4 143 9.8e-05 12.8 0.1 1 1 8.8e-06 0.00021 11.7 0.1 2 23 512 533 511 547 0.90 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 UPF0079 PF02367.12 123 4.8e-06 17.1 0.0 1 1 4.6e-07 1.1e-05 16.0 0.0 7 52 503 549 498 560 0.85 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_14 - 156 tRNA_anti-codon PF01336.20 75 2.3e-06 18.4 0.1 1 2 2.4e-06 5.7e-05 13.9 0.0 9 54 10 54 2 75 0.78 # 7951 # 8418 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.256 1_14 - 156 tRNA_anti-codon PF01336.20 75 2.3e-06 18.4 0.1 2 2 0.0079 0.19 2.6 0.0 11 48 91 129 82 135 0.78 # 7951 # 8418 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.256 1_24 - 741 AAA_24 PF13479.1 213 3.1e-05 14.5 0.0 1 1 2.7e-06 6.4e-05 13.5 0.0 5 91 513 662 510 674 0.68 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 NACHT PF05729.7 166 3.4e-05 14.5 0.0 1 1 2.6e-06 6.2e-05 13.6 0.0 3 22 514 533 512 542 0.85 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_25 PF13481.1 194 1.9e-05 15.0 0.0 1 1 1.5e-06 3.5e-05 14.1 0.0 7 51 482 529 476 567 0.85 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 1_24 - 741 AAA_5 PF07728.9 139 2.4e-06 18.2 0.0 1 1 3.3e-07 7.9e-06 16.5 0.0 3 64 515 580 513 665 0.77 # 15141 # 17363 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.296 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/167e8c3b-5a6a-4e04-96a2-a160117b8dcf # Target file: checkm_output/bins/pGCA_000092345.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000092345.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/167e8c3b-5a6a-4e04-96a2-a160117b8dcf checkm_output/bins/pGCA_000092345.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:30 2020 # [ok]