# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 548 ABC_ATPase PF09818.4 448 2.8e-05 13.2 0.2 1 2 0.0016 0.027 3.3 0.0 242 264 360 383 337 393 0.80 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 ABC_ATPase PF09818.4 448 2.8e-05 13.2 0.2 2 2 7.5e-05 0.0013 7.7 0.0 295 351 445 502 435 533 0.86 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_22 PF13401.1 131 1.2e-05 15.9 0.3 1 1 3.8e-06 6.5e-05 13.5 0.2 7 54 366 415 360 527 0.78 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_17 PF13207.1 121 0.0003 12.0 3.6 1 1 1.7e-05 0.00029 12.1 1.2 1 24 365 392 365 522 0.58 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 Miro PF08477.8 119 1e-05 16.5 0.0 1 1 1.3e-06 2.2e-05 15.4 0.0 1 26 365 401 365 450 0.73 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 T2SE PF00437.15 272 4.3e-06 16.1 0.1 1 1 4.8e-07 8.1e-06 15.2 0.1 101 160 335 395 290 397 0.81 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 SMC_N PF02463.14 220 4e-07 19.8 8.1 1 2 0.052 0.88 -0.9 0.0 187 212 226 253 217 257 0.69 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 SMC_N PF02463.14 220 4e-07 19.8 8.1 2 2 2.6e-07 4.5e-06 16.4 5.7 27 212 366 545 333 547 0.67 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_16 PF13191.1 185 7.8e-06 16.4 0.0 1 1 7.4e-07 1.3e-05 15.7 0.0 11 51 351 390 346 520 0.78 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_23 PF13476.1 202 0.00096 9.9 19.5 1 2 0.011 0.19 2.4 3.3 67 199 220 354 174 357 0.40 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_23 PF13476.1 202 0.00096 9.9 19.5 2 2 1.3e-05 0.00022 12.0 10.8 5 68 344 437 340 543 0.51 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_18 PF13238.1 129 0.00031 11.5 6.4 1 1 0.00023 0.0039 7.9 6.4 1 69 366 473 366 537 0.66 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_14 PF13173.1 128 1.4e-05 15.4 3.4 1 3 0.095 1.6 -0.9 0.1 14 42 216 241 214 256 0.77 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_14 PF13173.1 128 1.4e-05 15.4 3.4 2 3 2.8e-06 4.7e-05 13.7 0.1 3 47 364 409 362 449 0.75 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_14 PF13173.1 128 1.4e-05 15.4 3.4 3 3 0.038 0.65 0.3 0.1 60 73 480 504 424 530 0.54 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_29 PF13555.1 62 7.1e-08 22.4 0.0 1 1 9.5e-09 1.6e-07 21.3 0.0 16 41 357 381 351 399 0.75 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 Sigma54_activat PF00158.21 168 5.4e-07 19.6 0.0 1 2 2.7e-07 4.5e-06 16.6 0.0 4 69 345 412 342 422 0.80 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 Sigma54_activat PF00158.21 168 5.4e-07 19.6 0.0 2 2 0.028 0.47 0.3 0.0 92 123 490 522 437 524 0.87 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 DUF258 PF03193.11 161 4.1e-07 19.7 0.2 1 1 4.1e-08 7e-07 19.0 0.2 4 59 329 387 326 429 0.81 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 NTPase_1 PF03266.10 168 0.00017 11.8 1.9 1 2 6.9e-05 0.0012 9.0 0.1 1 20 365 384 365 393 0.87 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 NTPase_1 PF03266.10 168 0.00017 11.8 1.9 2 2 0.023 0.39 0.8 0.1 85 103 481 499 473 540 0.77 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_33 PF13671.1 143 2e-05 14.9 0.0 1 1 2.1e-05 0.00035 10.9 0.0 2 98 366 522 366 533 0.60 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_30 PF13604.1 196 6.9e-05 12.9 0.0 1 1 8.1e-06 0.00014 11.9 0.0 20 72 365 419 359 525 0.63 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 ABC_tran PF00005.22 137 1.4e-35 113.0 0.5 1 1 1.5e-36 2.6e-35 112.1 0.5 1 136 353 501 353 502 0.93 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_19 PF13245.1 76 2.5e-05 14.5 0.0 1 1 3.1e-06 5.2e-05 13.4 0.0 9 46 363 395 357 419 0.77 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_11 - 185 DUF463 PF04317.7 443 3e-05 13.1 0.1 1 1 2.3e-06 3.9e-05 12.7 0.1 222 303 82 164 71 172 0.79 # 8081 # 8635 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.276 1_2 - 548 SbcCD_C PF13558.1 90 2.4e-05 14.7 0.0 1 1 9.9e-06 0.00017 12.0 0.0 26 89 467 517 449 518 0.73 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 DUF815 PF05673.8 250 2.4e-06 17.0 0.1 1 1 2.5e-07 4.2e-06 16.2 0.1 49 93 359 410 320 423 0.71 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_17 - 1195 tRNA_anti-codon PF01336.20 75 1.1e-12 38.2 0.3 1 1 4.6e-13 7.8e-12 35.4 0.0 1 74 1036 1113 1036 1114 0.95 # 12754 # 16338 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_2 - 548 AAA_5 PF07728.9 139 3.1e-05 14.1 0.2 1 2 7.3e-05 0.0012 9.0 0.0 2 24 366 391 365 418 0.82 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 1_2 - 548 AAA_5 PF07728.9 139 3.1e-05 14.1 0.2 2 2 0.0059 0.1 2.8 0.0 61 94 486 521 464 523 0.84 # 285 # 1928 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.246 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fd6ae735-5b62-446e-81c1-e5ca1244c6e2 # Target file: checkm_output/bins/pGCA_000063585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000063585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fd6ae735-5b62-446e-81c1-e5ca1244c6e2 checkm_output/bins/pGCA_000063585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:28 2020 # [ok]