# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 264 MipZ PF09140.6 261 2.8e-05 14.3 0.2 1 1 8.3e-06 0.00022 11.3 0.2 2 41 3 43 2 155 0.79 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 YhjQ PF06564.7 244 6.6e-12 36.3 0.0 1 1 3.2e-13 8.6e-12 35.9 0.0 1 152 1 159 1 165 0.83 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_6 - 225 AAA_17 PF13207.1 121 1.7e-05 16.7 1.1 1 1 1.9e-06 2.5e-05 16.2 1.0 23 112 24 121 19 178 0.82 # 4442 # 5116 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_10 - 264 AAA_17 PF13207.1 121 0.00011 14.1 0.2 1 1 3.2e-05 0.00044 12.2 0.2 9 64 12 71 10 259 0.74 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 ArsA_ATPase PF02374.10 305 1.2e-10 31.9 0.1 1 1 9.3e-12 2.5e-10 30.9 0.1 3 137 3 134 1 162 0.71 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 VirC1 PF07015.6 231 0.00011 12.3 0.1 1 1 1.2e-05 0.00031 10.9 0.0 1 36 1 37 1 51 0.68 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 Fer4_NifH PF00142.13 273 1.4e-05 15.5 0.0 1 1 1.1e-06 3.1e-05 14.3 0.0 8 50 10 53 3 79 0.79 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 CbiA PF01656.18 195 5.2e-29 92.1 0.3 1 1 2.4e-30 6.5e-29 91.7 0.3 1 193 4 225 4 227 0.80 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 1_10 - 264 AAA_31 PF13614.1 157 5.4e-15 46.7 0.2 1 1 5.8e-16 1.6e-14 45.2 0.2 2 150 3 156 2 163 0.81 # 7366 # 8157 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c7673c71-e68b-4ff4-b784-a9460c610cbd # Target file: checkm_output/bins/pGCA_000024585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000024585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c7673c71-e68b-4ff4-b784-a9460c610cbd checkm_output/bins/pGCA_000024585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:20 2020 # [ok]