# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_7 - 1173 Parvo_NS1 PF01057.12 272 0.00016 14.0 0.0 1 1 3.2e-06 0.00046 12.5 0.0 90 194 575 706 555 719 0.85 # 7389 # 10907 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.465 2_28 - 239 MipZ PF09140.6 261 2.7e-06 20.0 0.1 1 1 8.2e-08 5.9e-06 18.9 0.1 4 43 5 43 3 51 0.88 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 8_3 - 304 MipZ PF09140.6 261 5.1e-05 15.8 0.0 1 2 4e-06 0.00029 13.4 0.0 10 80 16 87 12 110 0.81 # 3423 # 4334 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.432 8_3 - 304 MipZ PF09140.6 261 5.1e-05 15.8 0.0 2 2 0.079 5.7 -0.7 0.0 91 127 129 165 99 169 0.77 # 3423 # 4334 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.432 2_28 - 239 YhjQ PF06564.7 244 1.3e-08 27.8 0.1 1 1 4.9e-10 7e-08 25.5 0.1 3 235 3 233 1 236 0.80 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 1_22 - 513 GIDA PF01134.17 392 2.6e-05 16.6 0.4 1 2 1.3e-05 0.0018 10.5 0.2 1 29 4 32 4 49 0.85 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 GIDA PF01134.17 392 2.6e-05 16.6 0.4 2 2 0.0015 0.21 3.7 0.0 116 147 256 287 254 314 0.89 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 Pyr_redox_2 PF07992.9 201 6.3e-07 22.9 0.0 1 1 2e-08 2.9e-06 20.7 0.0 1 30 4 33 4 65 0.86 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 7_4 - 192 AAA_22 PF13401.1 131 0.0001 15.9 0.0 1 1 2e-06 0.00015 15.4 0.0 12 63 45 98 38 161 0.63 # 1422 # 1997 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.464 2_22 - 410 AAA_22 PF13401.1 131 0.00042 13.9 0.2 1 1 3.7e-05 0.0027 11.3 0.0 45 121 192 268 155 278 0.64 # 15766 # 16995 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.439 1_22 - 513 Trp_halogenase PF04820.9 454 0.0017 10.4 0.1 1 1 2.1e-05 0.0031 9.5 0.1 2 37 5 37 4 40 0.94 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 3_1 - 524 AAA_21 PF13304.1 303 9.7e-11 35.5 7.1 1 3 3.7e-06 0.00054 13.4 0.1 6 46 32 68 30 129 0.69 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 3_1 - 524 AAA_21 PF13304.1 303 9.7e-11 35.5 7.1 2 3 2.6e-09 3.8e-07 23.7 0.0 249 299 140 190 133 195 0.86 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 3_1 - 524 AAA_21 PF13304.1 303 9.7e-11 35.5 7.1 3 3 0.043 6.3 0.0 1.5 104 189 228 312 199 392 0.61 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 1_4 - 915 Helicase_C PF00271.26 78 8e-07 22.3 0.0 1 1 1.6e-08 2.2e-06 20.9 0.0 21 78 619 677 603 677 0.88 # 2402 # 5146 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.302 8_3 - 304 ArsA_ATPase PF02374.10 305 0.00029 13.3 0.0 1 1 7.3e-06 0.00053 12.5 0.0 10 154 16 164 8 199 0.67 # 3423 # 4334 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.432 2_28 - 239 ArsA_ATPase PF02374.10 305 0.00067 12.1 0.3 1 1 1.6e-05 0.0012 11.3 0.3 2 44 3 45 2 79 0.87 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 1_22 - 513 GDI PF00996.13 439 2e-05 16.4 0.1 1 2 0.001 0.15 3.7 0.0 5 46 3 44 1 50 0.92 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 GDI PF00996.13 439 2e-05 16.4 0.1 2 2 7.9e-06 0.0011 10.6 0.0 226 286 229 290 223 302 0.89 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 NAD_binding_8 PF13450.1 68 1.4e-18 60.1 0.1 1 1 2.5e-20 3.6e-18 58.9 0.1 1 61 7 67 7 75 0.92 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 FAD_binding_3 PF01494.14 356 1.4e-06 21.0 0.1 1 1 2e-08 2.9e-06 19.9 0.1 1 34 2 35 2 44 0.94 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 3_1 - 524 SMC_N PF02463.14 220 0.00045 12.9 0.2 1 1 1.9e-05 0.0027 10.3 0.2 28 189 29 179 15 200 0.69 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 2_28 - 239 VirC1 PF07015.6 231 1.7e-11 37.0 0.5 1 2 1.9e-08 2.8e-06 19.9 0.1 4 45 4 45 1 46 0.91 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 2_28 - 239 VirC1 PF07015.6 231 1.7e-11 37.0 0.5 2 2 9e-07 0.00013 14.5 0.0 79 157 100 174 96 208 0.82 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 2_28 - 239 Fer4_NifH PF00142.13 273 6.6e-10 32.0 0.1 1 2 1.1e-07 1.6e-05 17.6 0.0 3 39 4 41 2 75 0.78 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 2_28 - 239 Fer4_NifH PF00142.13 273 6.6e-10 32.0 0.1 2 2 3.9e-06 0.00056 12.5 0.0 188 245 175 233 168 236 0.89 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 4_2 - 542 AAA_23 PF13476.1 202 0.0075 10.0 8.5 1 1 0.00013 0.019 8.7 8.5 132 201 10 77 1 79 0.83 # 2470 # 4095 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 4_2 - 542 AAA_13 PF13166.1 712 0.0022 9.8 6.2 1 1 2.3e-05 0.0033 9.3 6.2 395 457 18 80 10 84 0.88 # 2470 # 4095 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 2_28 - 239 CbiA PF01656.18 195 2e-27 89.2 0.0 1 1 3.7e-29 2.6e-27 88.9 0.0 1 195 4 205 4 205 0.77 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 8_3 - 304 CbiA PF01656.18 195 1.9e-20 66.5 0.0 1 1 4.5e-22 3.2e-20 65.7 0.0 7 159 15 204 12 254 0.69 # 3423 # 4334 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.432 1_22 - 513 HI0933_like PF03486.9 409 2.9e-07 22.7 0.0 1 2 2.8e-06 0.0004 12.3 0.1 2 35 4 37 3 40 0.91 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 HI0933_like PF03486.9 409 2.9e-07 22.7 0.0 2 2 6e-05 0.0086 7.9 0.0 108 161 234 287 229 293 0.92 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 3_1 - 524 AAA_29 PF13555.1 62 1.3e-05 18.1 0.0 1 1 2.5e-07 3.6e-05 16.7 0.0 16 43 19 45 12 56 0.81 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 1_22 - 513 FAD_binding_2 PF00890.19 417 2.6e-11 36.4 0.1 1 3 3.6e-09 5.2e-07 22.2 0.1 1 37 4 42 4 57 0.85 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 FAD_binding_2 PF00890.19 417 2.6e-11 36.4 0.1 2 3 7.5e-05 0.011 8.0 0.0 137 215 231 316 199 365 0.76 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 FAD_binding_2 PF00890.19 417 2.6e-11 36.4 0.1 3 3 0.0028 0.41 2.8 0.0 390 402 464 476 391 498 0.83 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 Thi4 PF01946.12 230 2.5e-06 20.1 0.1 1 1 2.6e-08 3.8e-06 19.5 0.1 16 56 1 41 1 52 0.93 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 Strep_67kDa_ant PF06100.6 500 0.00035 12.4 0.0 1 1 5.8e-06 0.00084 11.1 0.2 6 60 6 54 2 60 0.85 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 8_3 - 304 AAA_31 PF13614.1 157 1.8e-07 24.6 0.0 1 1 7.2e-09 5.2e-07 23.1 0.0 10 64 16 72 12 113 0.76 # 3423 # 4334 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.432 2_28 - 239 AAA_31 PF13614.1 157 4.1e-07 23.5 0.1 1 1 1.8e-08 1.3e-06 21.8 0.1 3 63 4 64 4 141 0.65 # 20789 # 21505 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 4_10 - 81 FmrO PF07091.6 251 0.0013 11.2 0.0 1 1 1.1e-05 0.0016 10.9 0.0 209 235 48 74 37 80 0.89 # 14215 # 14457 # -1 # ID=4_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 4_8 - 333 AAA_30 PF13604.1 196 0.00098 12.1 0.0 1 1 2.3e-05 0.0033 10.4 0.0 40 124 187 276 180 279 0.81 # 12019 # 13017 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 2_22 - 410 DNA_pol3_delta PF06144.8 172 0.00015 14.7 0.1 1 2 0.025 3.6 0.5 0.0 146 171 10 35 7 36 0.91 # 15766 # 16995 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.439 2_22 - 410 DNA_pol3_delta PF06144.8 172 0.00015 14.7 0.1 2 2 1.1e-05 0.0016 11.4 0.0 94 165 265 331 229 335 0.80 # 15766 # 16995 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.439 3_1 - 524 Dynamin_N PF00350.18 168 4.4e-05 16.8 0.1 1 1 5.2e-07 7.5e-05 16.0 0.1 5 142 32 193 28 210 0.74 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 1_22 - 513 Lycopene_cycl PF05834.7 374 0.00086 11.7 0.2 1 2 7e-05 0.01 8.1 0.0 1 34 4 35 4 48 0.84 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 Lycopene_cycl PF05834.7 374 0.00086 11.7 0.2 2 2 0.0081 1.2 1.3 0.0 100 134 249 284 234 312 0.81 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 3_1 - 524 ABC_tran PF00005.22 137 7.8e-21 68.2 0.0 1 1 9.1e-23 1.3e-20 67.5 0.0 1 137 15 159 15 159 0.81 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 3_1 - 524 SbcCD_C PF13558.1 90 0.00026 14.4 0.0 1 1 8.8e-06 0.0013 12.1 0.0 20 85 118 170 109 175 0.78 # 2 # 1573 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 1_22 - 513 FAD_oxidored PF12831.2 428 0.00011 14.8 0.1 1 1 1.3e-06 0.00018 14.0 0.1 1 38 4 41 4 46 0.95 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 DAO PF01266.19 358 1.5e-17 56.9 0.1 1 2 6.1e-13 8.8e-11 34.6 0.0 1 38 4 41 4 146 0.87 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 DAO PF01266.19 358 1.5e-17 56.9 0.1 2 2 1.3e-08 1.8e-06 20.4 0.0 148 345 236 480 206 495 0.65 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_4 - 915 ResIII PF04851.10 184 9.9e-08 25.4 0.0 1 3 0.095 14 -1.1 0.5 78 125 216 260 165 286 0.55 # 2402 # 5146 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.302 1_4 - 915 ResIII PF04851.10 184 9.9e-08 25.4 0.0 2 3 6.9e-10 9.9e-08 25.4 0.0 2 182 297 488 296 490 0.58 # 2402 # 5146 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.302 1_4 - 915 ResIII PF04851.10 184 9.9e-08 25.4 0.0 3 3 0.087 13 -1.0 1.0 80 133 535 588 498 638 0.66 # 2402 # 5146 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.302 1_4 - 915 DEAD PF00270.24 169 1.4e-13 44.1 0.0 1 1 4e-15 5.8e-13 42.1 0.0 14 167 317 494 300 496 0.71 # 2402 # 5146 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.302 1_22 - 513 Pyr_redox PF00070.22 80 2.5e-05 18.1 0.4 1 1 7.3e-07 0.00011 16.1 0.2 3 32 6 35 4 42 0.91 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_13 - 385 tRNA_anti_2 PF13742.1 99 1.3e-21 69.8 0.0 1 1 2.3e-23 3.4e-21 68.5 0.0 2 96 9 103 8 106 0.94 # 12669 # 13823 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.524 1_22 - 513 Amino_oxidase PF01593.19 450 2.7e-13 43.1 0.0 1 3 3.4e-12 4.9e-10 32.4 0.0 1 66 12 75 12 93 0.84 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 Amino_oxidase PF01593.19 450 2.7e-13 43.1 0.0 2 3 0.0035 0.51 2.7 0.0 208 263 234 291 175 299 0.80 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_22 - 513 Amino_oxidase PF01593.19 450 2.7e-13 43.1 0.0 3 3 0.001 0.15 4.4 0.0 394 430 445 479 397 494 0.83 # 23574 # 25112 # -1 # ID=1_22;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.467 1_21 - 920 Herpes_ori_bp PF02399.10 824 3.5e-14 45.0 0.0 1 1 4.6e-16 6.6e-14 44.2 0.0 40 214 424 587 404 591 0.81 # 20781 # 23540 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.435 1_13 - 385 tRNA_anti-codon PF01336.20 75 3.3e-10 33.2 0.0 1 1 5e-12 7.2e-10 32.1 0.0 2 70 32 102 31 106 0.91 # 12669 # 13823 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.524 4_2 - 542 ABC_tran_2 PF12848.2 85 0.023 8.0 12.5 1 1 0.00033 0.047 7.0 12.5 18 75 16 75 11 83 0.67 # 2470 # 4095 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 8_3 - 304 APS_kinase PF01583.15 157 0.00052 13.1 0.0 1 1 7.1e-06 0.001 12.2 0.0 11 70 16 75 7 87 0.86 # 3423 # 4334 # 1 # ID=8_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/477db3ff-ef2a-4dc1-8f24-b3c792df9671 # Target file: checkm_output/bins/pGCA_000024045.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000024045.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/477db3ff-ef2a-4dc1-8f24-b3c792df9671 checkm_output/bins/pGCA_000024045.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:22 2020 # [ok]