# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 1173 Parvo_NS1 PF01057.12 272 0.00012 14.1 0.0 1 1 3.2e-06 0.00036 12.5 0.0 90 194 575 706 555 719 0.85 # 1244 # 4762 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 7_6 - 239 MipZ PF09140.6 261 6e-07 21.8 0.1 1 1 2.3e-08 1.3e-06 20.7 0.1 4 43 5 43 3 51 0.88 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 12_2 - 197 MipZ PF09140.6 261 1e-06 21.1 0.1 1 2 1.1e-06 6.1e-05 15.2 0.0 2 23 2 23 1 48 0.79 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 12_2 - 197 MipZ PF09140.6 261 1e-06 21.1 0.1 2 2 0.0026 0.15 4.1 0.0 94 128 63 98 50 114 0.81 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 7_6 - 239 YhjQ PF06564.7 244 2.4e-09 29.9 0.2 1 1 1.1e-10 1.3e-08 27.6 0.2 3 235 3 233 1 236 0.80 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 12_2 - 197 SRP54 PF00448.17 196 0.00025 13.6 0.0 1 1 7.4e-05 0.0083 8.6 0.0 11 43 11 42 2 87 0.63 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 7_6 - 239 ArsA_ATPase PF02374.10 305 0.00046 12.3 0.6 1 1 1.6e-05 0.00087 11.4 0.5 2 44 3 45 2 79 0.88 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 12_2 - 197 ArsA_ATPase PF02374.10 305 0.0015 10.6 0.0 1 2 9.3e-05 0.0052 8.8 0.0 7 33 7 33 1 44 0.82 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 12_2 - 197 ArsA_ATPase PF02374.10 305 0.0015 10.6 0.0 2 2 0.094 5.3 -1.0 0.0 124 135 65 76 52 80 0.80 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 7_6 - 239 VirC1 PF07015.6 231 3.7e-10 32.3 0.6 1 2 9.4e-07 5.3e-05 15.4 0.1 4 45 4 45 1 46 0.91 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 7_6 - 239 VirC1 PF07015.6 231 3.7e-10 32.3 0.6 2 2 1.4e-06 8.1e-05 14.8 0.0 79 157 100 174 82 205 0.83 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 12_2 - 197 VirC1 PF07015.6 231 1.4e-06 20.6 0.1 1 2 6.8e-07 3.8e-05 15.9 0.0 3 47 2 45 1 52 0.68 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 12_2 - 197 VirC1 PF07015.6 231 1.4e-06 20.6 0.1 2 2 0.0057 0.32 3.1 0.0 100 177 85 157 55 176 0.61 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 7_6 - 239 Fer4_NifH PF00142.13 273 3.3e-10 32.6 0.2 1 2 7e-08 7.8e-06 18.3 0.0 3 39 4 41 2 75 0.80 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 7_6 - 239 Fer4_NifH PF00142.13 273 3.3e-10 32.6 0.2 2 2 3.9e-06 0.00044 12.5 0.0 188 245 175 233 168 236 0.89 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 7_6 - 239 CbiA PF01656.18 195 1.9e-27 89.0 0.0 1 1 4.3e-29 2.4e-27 88.6 0.0 1 195 4 205 4 205 0.78 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 12_2 - 197 CbiA PF01656.18 195 3.1e-18 58.9 0.1 1 1 4.8e-19 2.7e-17 55.8 0.1 1 172 3 140 3 164 0.76 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 12_2 - 197 AAA_31 PF13614.1 157 2.5e-11 36.8 0.0 1 2 3.1e-08 1.8e-06 21.1 0.0 2 43 2 42 1 57 0.89 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 12_2 - 197 AAA_31 PF13614.1 157 2.5e-11 36.8 0.0 2 2 4.7e-06 0.00026 14.0 0.0 116 154 66 104 62 107 0.92 # 622 # 1212 # -1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 7_6 - 239 AAA_31 PF13614.1 157 5.3e-07 22.8 0.1 1 1 2.7e-08 1.5e-06 21.3 0.1 3 134 4 121 4 140 0.60 # 2232 # 2948 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 10_3 - 333 AAA_30 PF13604.1 196 0.00076 12.1 0.0 1 1 2.3e-05 0.0025 10.4 0.0 40 124 187 276 180 279 0.81 # 1216 # 2214 # -1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.310 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/74a5869a-a5fd-45a8-9192-2167a09cee56 # Target file: checkm_output/bins/pGCA_000021805.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000021805.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/74a5869a-a5fd-45a8-9192-2167a09cee56 checkm_output/bins/pGCA_000021805.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:16 2020 # [ok]