# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_45 - 638 cobW PF02492.14 178 8e-05 14.1 5.6 1 2 0.0078 0.41 2.0 1.0 108 177 60 131 47 132 0.79 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 cobW PF02492.14 178 8e-05 14.1 5.6 2 2 1.9e-06 0.0001 13.8 0.2 5 36 250 284 247 290 0.69 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_1 - 1527 ubiquitin PF00240.18 69 1.2e-05 16.8 17.0 1 5 0.042 2.2 -0.2 0.1 11 27 207 223 202 229 0.86 # 106 # 4686 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_1 - 1527 ubiquitin PF00240.18 69 1.2e-05 16.8 17.0 2 5 0.0011 0.059 4.9 0.1 10 30 991 1011 989 1017 0.85 # 106 # 4686 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_1 - 1527 ubiquitin PF00240.18 69 1.2e-05 16.8 17.0 3 5 0.0074 0.39 2.2 0.1 10 30 1078 1098 1070 1104 0.85 # 106 # 4686 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_1 - 1527 ubiquitin PF00240.18 69 1.2e-05 16.8 17.0 4 5 0.00014 0.0073 7.8 0.1 10 31 1165 1186 1157 1191 0.85 # 106 # 4686 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_1 - 1527 ubiquitin PF00240.18 69 1.2e-05 16.8 17.0 5 5 0.00014 0.0073 7.8 0.1 10 31 1252 1273 1244 1278 0.85 # 106 # 4686 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 1_35 - 117 SSB PF00436.20 104 2.9e-38 122.0 1.0 1 1 6.4e-40 3.4e-38 121.8 1.0 1 104 1 102 1 102 0.98 # 31934 # 32284 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_45 - 638 DUF87 PF01935.12 229 2.6e-06 19.4 1.3 1 2 0.0065 0.34 2.6 0.3 145 211 70 137 39 158 0.67 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 DUF87 PF01935.12 229 2.6e-06 19.4 1.3 2 2 4.8e-08 2.6e-06 19.4 1.3 28 195 250 443 245 475 0.65 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 NB-ARC PF00931.17 287 0.0001 13.2 0.7 1 2 0.0061 0.32 1.7 0.2 48 84 65 104 60 155 0.76 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 NB-ARC PF00931.17 287 0.0001 13.2 0.7 2 2 4e-05 0.0021 8.9 0.0 24 45 250 272 230 282 0.81 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_22 PF13401.1 131 6.6e-07 21.6 0.8 1 3 0.017 0.92 1.7 0.1 40 98 68 150 47 169 0.63 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_22 PF13401.1 131 6.6e-07 21.6 0.8 2 3 2.3e-06 0.00012 14.2 0.0 4 34 245 275 242 327 0.79 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_22 PF13401.1 131 6.6e-07 21.6 0.8 3 3 0.025 1.3 1.2 0.0 88 107 498 521 436 550 0.70 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_17 PF13207.1 121 9.6e-05 15.2 2.2 1 1 6.6e-06 0.00035 13.4 0.2 3 26 249 272 248 403 0.78 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 MobB PF03205.9 140 8.8e-05 14.2 0.3 1 2 2e-05 0.0011 10.7 0.1 4 23 249 268 247 282 0.85 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 MobB PF03205.9 140 8.8e-05 14.2 0.3 2 2 0.03 1.6 0.5 0.0 74 119 407 454 398 475 0.73 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Arf PF00025.16 175 3.3e-05 15.2 2.0 1 2 0.0034 0.18 3.0 0.3 104 146 60 102 51 135 0.69 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Arf PF00025.16 175 3.3e-05 15.2 2.0 2 2 1.2e-05 0.00065 11.0 0.1 12 38 243 269 232 281 0.81 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 T2SE PF00437.15 272 0.00023 12.1 0.2 1 1 1e-05 0.00053 10.9 0.2 122 151 239 268 222 282 0.82 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Arch_ATPase PF01637.13 234 0.036 5.7 13.3 1 3 0.033 1.8 0.2 0.3 107 161 81 134 53 172 0.72 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Arch_ATPase PF01637.13 234 0.036 5.7 13.3 2 3 1.6e-05 0.00085 11.0 0.1 24 44 249 269 242 296 0.84 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Arch_ATPase PF01637.13 234 0.036 5.7 13.3 3 3 0.045 2.4 -0.3 2.0 48 114 361 424 346 530 0.72 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_16 PF13191.1 185 0.00027 13.0 0.0 1 1 1.7e-05 0.00089 11.3 0.0 26 45 247 266 235 297 0.90 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_18 PF13238.1 129 1.3e-05 17.6 5.6 1 2 8.8e-06 0.00046 12.5 2.2 3 29 250 281 249 449 0.76 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_18 PF13238.1 129 1.3e-05 17.6 5.6 2 2 0.0043 0.23 3.8 0.1 66 105 577 630 446 631 0.81 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_14 PF13173.1 128 0.00049 12.0 6.1 1 3 0.095 5 -0.9 0.3 36 73 65 104 52 157 0.59 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_14 PF13173.1 128 0.00049 12.0 6.1 2 3 2.7e-05 0.0014 10.6 0.0 5 28 248 274 244 365 0.82 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_14 PF13173.1 128 0.00049 12.0 6.1 3 3 0.0073 0.39 2.7 0.2 54 76 484 516 417 602 0.58 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_29 PF13555.1 62 6.2e-05 14.6 0.1 1 1 3.7e-06 0.0002 12.9 0.0 22 40 244 262 234 267 0.80 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA PF00004.24 132 0.0019 10.4 3.7 1 2 0.00041 0.021 7.0 0.0 2 28 249 280 248 307 0.76 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA PF00004.24 132 0.0019 10.4 3.7 2 2 0.0099 0.52 2.5 0.1 57 114 497 548 460 566 0.73 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 MMR_HSR1 PF01926.18 116 1.8e-05 16.7 0.9 1 2 0.037 1.9 0.5 0.2 74 104 60 91 37 156 0.61 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 MMR_HSR1 PF01926.18 116 1.8e-05 16.7 0.9 2 2 3.3e-06 0.00018 13.5 0.0 2 29 248 274 247 357 0.86 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_49 - 740 TraG-D_C PF12696.2 128 1.3e-38 123.8 0.2 1 1 1.6e-39 8.4e-38 121.2 0.1 2 127 465 581 464 582 0.90 # 44403 # 46622 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_45 - 638 AAA_33 PF13671.1 143 2.6e-05 16.1 0.0 1 1 1.5e-06 8.2e-05 14.5 0.0 3 26 249 272 248 284 0.88 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 FtsK_SpoIIIE PF01580.13 205 0.00059 11.3 0.1 1 1 2.6e-05 0.0014 10.2 0.1 34 59 241 266 224 269 0.85 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 ABC_tran PF00005.22 137 0.0012 11.1 6.4 1 1 2e-05 0.0011 11.3 3.7 9 67 243 342 239 418 0.67 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 AAA_10 PF12846.2 304 3.5e-66 215.6 5.0 1 1 2.5e-67 6.5e-66 214.7 5.0 1 301 245 591 245 596 0.89 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_49 - 740 AAA_10 PF12846.2 304 1.8e-08 26.1 1.1 1 1 1.2e-09 3.3e-08 25.3 0.1 3 297 161 539 159 544 0.67 # 44403 # 46622 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_45 - 638 Zot PF05707.7 193 6.6e-07 20.9 0.1 1 2 0.077 4.1 -1.2 0.0 4 15 249 260 248 283 0.85 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Zot PF05707.7 193 6.6e-07 20.9 0.1 2 2 8.4e-08 4.5e-06 18.2 0.0 67 129 486 549 443 584 0.81 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 Viral_helicase1 PF01443.13 234 0.00021 12.8 0.0 1 1 1.1e-05 0.00061 11.3 0.0 3 23 250 271 248 286 0.79 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_49 - 740 DEAD PF00270.24 169 0.0002 12.9 0.0 1 1 1.9e-05 0.00099 10.6 0.0 18 70 163 216 152 427 0.86 # 44403 # 46622 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_49 - 740 TrwB_AAD_bind PF10412.4 386 2e-21 68.0 0.0 1 2 0.00078 0.021 5.4 0.0 18 127 162 289 154 324 0.62 # 44403 # 46622 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_49 - 740 TrwB_AAD_bind PF10412.4 386 2e-21 68.0 0.0 2 2 2.8e-20 7.4e-19 59.5 0.0 201 374 416 589 320 595 0.74 # 44403 # 46622 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_45 - 638 TrwB_AAD_bind PF10412.4 386 3.6e-05 14.5 0.8 1 2 8.8e-06 0.00023 11.8 0.1 16 71 246 309 238 314 0.81 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_45 - 638 TrwB_AAD_bind PF10412.4 386 3.6e-05 14.5 0.8 2 2 0.017 0.46 0.9 0.1 246 327 504 598 372 603 0.73 # 39268 # 41181 # -1 # ID=1_45;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_49 - 740 T4SS-DNA_transf PF02534.9 469 4e-52 169.2 3.2 1 1 1.4e-53 7.4e-52 168.4 3.2 47 432 162 588 121 601 0.77 # 44403 # 46622 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_35 - 117 DUF3127 PF11325.3 84 0.00016 13.7 0.4 1 1 4.8e-06 0.00025 13.1 0.4 38 81 48 97 15 100 0.80 # 31934 # 32284 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_35 - 117 tRNA_anti-codon PF01336.20 75 4.3e-06 18.6 0.3 1 1 1.4e-07 7.2e-06 17.9 0.3 28 73 47 100 4 102 0.83 # 31934 # 32284 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.291 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/86fc1174-fade-4490-9e59-b6dfb617d539 # Target file: checkm_output/bins/pGCA_000020165.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000020165.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/86fc1174-fade-4490-9e59-b6dfb617d539 checkm_output/bins/pGCA_000020165.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:08 2020 # [ok]