# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 8_18 - 403 ThiI PF02568.9 197 0.00031 14.8 0.0 1 1 1.9e-06 0.00065 13.8 0.0 4 162 216 382 213 390 0.75 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 8_18 - 403 ATP_bind_3 PF01171.15 182 0.0023 12.0 0.0 1 1 1.1e-05 0.0037 11.4 0.0 1 58 217 269 217 375 0.77 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 1_52 - 413 Terminase_6 PF03237.10 384 1e-43 144.1 0.0 1 1 3.9e-45 1.2e-43 143.9 0.0 1 381 27 392 27 395 0.94 # 46376 # 47614 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 3_11 - 263 Terminase_6 PF03237.10 384 5.4e-29 95.7 0.1 1 1 2.1e-30 6.4e-29 95.4 0.1 132 381 8 242 1 244 0.92 # 7077 # 7865 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.272 7_7 - 206 Terminase_6 PF03237.10 384 1.1e-22 74.9 0.0 1 1 4.5e-24 1.4e-22 74.6 0.0 194 381 8 185 2 187 0.89 # 2606 # 3223 # -1 # ID=7_7;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.293 7_24 - 165 Terminase_6 PF03237.10 384 6e-19 62.6 0.2 1 1 2.4e-20 7.2e-19 62.3 0.2 132 277 8 141 2 149 0.90 # 14990 # 15484 # 1 # ID=7_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.279 2_32 - 108 Terminase_6 PF03237.10 384 6e-13 42.9 0.0 1 1 2.3e-14 7.2e-13 42.6 0.0 191 281 5 88 2 95 0.93 # 21866 # 22189 # 1 # ID=2_32;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 7_23 - 181 Terminase_6 PF03237.10 384 1.4e-12 41.7 0.1 1 1 6.5e-14 2e-12 41.1 0.1 2 102 66 168 65 169 0.97 # 14424 # 14966 # 1 # ID=7_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.250 2_31 - 56 Terminase_6 PF03237.10 384 2.6e-08 27.6 0.0 1 1 8.9e-10 2.7e-08 27.5 0.0 59 111 2 55 1 55 0.96 # 21497 # 21664 # 1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.280 3_12 - 142 Terminase_6 PF03237.10 384 2.2e-07 24.5 0.0 1 1 9.7e-09 3e-07 24.1 0.0 2 73 66 138 65 140 0.92 # 8000 # 8425 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.256 3_41 - 121 Terminase_6 PF03237.10 384 2.2e-06 21.3 0.0 1 1 8.2e-08 2.5e-06 21.1 0.0 281 381 3 100 1 102 0.90 # 25640 # 26002 # 1 # ID=3_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 2_33 - 99 Terminase_6 PF03237.10 384 2e-05 18.1 0.0 1 1 8e-07 2.4e-05 17.8 0.0 299 381 5 78 2 80 0.83 # 22186 # 22482 # 1 # ID=2_33;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 7_25 - 99 Terminase_6 PF03237.10 384 0.0022 11.4 0.0 1 1 8.8e-05 0.0027 11.1 0.0 301 381 7 78 2 80 0.77 # 15481 # 15777 # 1 # ID=7_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.266 3_12 - 142 IstB_IS21 PF01695.12 178 0.0023 12.0 0.0 1 1 1.5e-05 0.0025 11.8 0.0 45 79 59 93 13 125 0.71 # 8000 # 8425 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.256 7_23 - 181 IstB_IS21 PF01695.12 178 0.0025 11.9 0.0 1 1 2.3e-05 0.0038 11.2 0.0 21 74 36 88 25 112 0.74 # 14424 # 14966 # 1 # ID=7_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.250 10_3 - 251 MipZ PF09140.6 261 9.8e-14 45.6 0.1 1 1 1.8e-13 7.6e-12 39.4 0.1 2 181 8 207 7 223 0.72 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 3_23 - 250 MipZ PF09140.6 261 8.9e-13 42.5 0.2 1 2 4e-10 1.7e-08 28.4 0.1 2 72 8 73 7 91 0.73 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 3_23 - 250 MipZ PF09140.6 261 8.9e-13 42.5 0.2 2 2 3.5e-05 0.0015 12.3 0.0 83 129 110 156 79 171 0.78 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 5_19 - 254 MipZ PF09140.6 261 5.6e-12 39.9 0.1 1 1 7.2e-12 3e-10 34.2 0.0 2 129 8 155 7 178 0.69 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 6_4 - 255 MipZ PF09140.6 261 5.8e-11 36.5 0.1 1 1 2.6e-11 1.1e-09 32.3 0.1 2 129 8 155 7 196 0.68 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 7_16 - 248 MipZ PF09140.6 261 8.7e-11 35.9 0.2 1 1 2.6e-10 1.1e-08 29.1 0.2 2 128 8 153 7 157 0.58 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 1_55 - 252 MipZ PF09140.6 261 1.1e-10 35.7 0.1 1 1 8.1e-11 3.4e-09 30.7 0.1 2 128 8 153 7 193 0.68 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 2_17 - 251 MipZ PF09140.6 261 2.2e-09 31.3 0.2 1 1 3.4e-09 1.4e-07 25.4 0.2 2 58 8 62 7 156 0.61 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 11_2 - 254 MipZ PF09140.6 261 4.7e-09 30.3 0.0 1 1 1e-09 4.4e-08 27.1 0.0 2 128 4 149 3 172 0.70 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 5_19 - 254 YhjQ PF06564.7 244 2.4e-11 38.1 0.0 1 1 4.5e-13 3.8e-11 37.4 0.0 3 150 8 157 7 167 0.78 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 11_2 - 254 YhjQ PF06564.7 244 2.7e-06 21.5 0.0 1 1 2.5e-07 2.1e-05 18.6 0.0 3 209 4 224 2 230 0.65 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 10_3 - 251 YhjQ PF06564.7 244 8.8e-05 16.5 0.0 1 1 2e-06 0.00017 15.6 0.0 3 150 8 157 7 166 0.74 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 6_4 - 255 YhjQ PF06564.7 244 0.00067 13.7 0.0 1 1 1.1e-05 0.00094 13.2 0.0 3 144 8 151 6 162 0.70 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 3_32 - 49 SSB PF00436.20 104 2.1e-07 25.4 0.1 1 1 1.3e-09 2.2e-07 25.3 0.1 1 38 9 46 9 48 0.93 # 20487 # 20633 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.293 7_12 - 51 SSB PF00436.20 104 0.0007 14.1 0.1 1 1 4.9e-06 0.00082 13.9 0.1 1 33 9 41 9 45 0.95 # 7343 # 7495 # -1 # ID=7_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 6_4 - 255 AAA_22 PF13401.1 131 0.0018 13.1 0.1 1 1 1.6e-05 0.0054 11.5 0.1 14 111 17 146 9 175 0.69 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 6_4 - 255 ATP_bind_1 PF03029.12 238 0.00013 16.1 0.0 1 1 6.3e-07 0.00021 15.5 0.0 6 45 17 56 15 132 0.89 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 6_4 - 255 SRP54 PF00448.17 196 0.0013 12.8 0.0 1 2 8.4e-05 0.028 8.4 0.0 11 38 17 44 6 68 0.87 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 6_4 - 255 SRP54 PF00448.17 196 0.0013 12.8 0.0 2 2 0.0063 2.1 2.3 0.0 80 92 121 133 88 144 0.75 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 8_18 - 403 NAD_synthase PF02540.12 242 1.6e-12 41.4 0.0 1 2 4.5e-12 7.6e-10 32.7 0.0 4 80 201 276 198 296 0.87 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 8_18 - 403 NAD_synthase PF02540.12 242 1.6e-12 41.4 0.0 2 2 0.00043 0.072 6.5 0.0 148 177 361 390 357 393 0.94 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 6_19 - 78 NAD_synthase PF02540.12 242 0.0033 10.9 0.0 1 1 2.6e-05 0.0043 10.5 0.0 148 177 36 65 32 68 0.94 # 18359 # 18592 # 1 # ID=6_19;partial=01;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 6_4 - 255 ArsA_ATPase PF02374.10 305 2.6e-12 41.0 0.2 1 1 2.6e-13 1.1e-11 38.9 0.1 7 137 13 135 6 141 0.71 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 10_3 - 251 ArsA_ATPase PF02374.10 305 1.1e-10 35.6 0.0 1 1 1.2e-11 5.2e-10 33.4 0.0 7 139 13 138 7 142 0.70 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 3_23 - 250 ArsA_ATPase PF02374.10 305 3.5e-10 34.0 0.7 1 1 1.8e-11 7.5e-10 32.9 0.1 7 136 13 135 7 138 0.77 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 5_19 - 254 ArsA_ATPase PF02374.10 305 3.1e-09 30.9 0.0 1 1 2.4e-10 1e-08 29.2 0.0 9 141 15 139 8 210 0.74 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 2_17 - 251 ArsA_ATPase PF02374.10 305 6.1e-08 26.6 0.6 1 1 7.7e-09 3.2e-07 24.2 0.6 7 136 13 133 7 138 0.78 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 7_16 - 248 ArsA_ATPase PF02374.10 305 5.3e-07 23.5 0.9 1 1 6.6e-08 2.8e-06 21.2 0.9 7 136 13 133 6 138 0.68 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 1_55 - 252 ArsA_ATPase PF02374.10 305 2.5e-06 21.3 1.7 1 1 9.9e-07 4.2e-05 17.3 1.7 7 136 13 133 6 138 0.54 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 11_2 - 254 ArsA_ATPase PF02374.10 305 4.4e-06 20.5 0.5 1 1 4.7e-07 2e-05 18.4 0.5 9 136 11 129 3 207 0.77 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 7_23 - 181 PhoH PF02562.11 205 0.00029 14.7 0.0 1 1 4.1e-06 0.00046 14.1 0.0 5 47 45 89 42 95 0.79 # 14424 # 14966 # 1 # ID=7_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.250 3_12 - 142 PhoH PF02562.11 205 0.0005 14.0 0.0 1 1 5.8e-06 0.00065 13.6 0.0 5 47 45 89 43 110 0.84 # 8000 # 8425 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.256 1_52 - 413 PhoH PF02562.11 205 0.0026 11.6 0.0 1 2 0.00049 0.055 7.3 0.0 5 44 7 48 4 84 0.83 # 46376 # 47614 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_52 - 413 PhoH PF02562.11 205 0.0026 11.6 0.0 2 2 0.023 2.5 1.8 0.0 113 152 121 158 106 170 0.85 # 46376 # 47614 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 7_23 - 181 T2SE PF00437.15 272 0.00033 14.2 0.0 1 1 1.3e-06 0.00044 13.8 0.0 111 153 43 87 20 93 0.68 # 14424 # 14966 # 1 # ID=7_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.250 10_3 - 251 VirC1 PF07015.6 231 6.3e-10 33.1 0.0 1 2 1e-09 4.2e-08 27.1 0.0 3 44 8 49 6 64 0.91 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 10_3 - 251 VirC1 PF07015.6 231 6.3e-10 33.1 0.0 2 2 0.012 0.5 4.0 0.0 83 113 124 154 101 186 0.79 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 2_17 - 251 VirC1 PF07015.6 231 4.6e-06 20.4 0.0 1 2 1.9e-06 7.9e-05 16.4 0.0 3 46 8 50 6 84 0.84 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 2_17 - 251 VirC1 PF07015.6 231 4.6e-06 20.4 0.0 2 2 0.045 1.9 2.1 0.0 82 121 122 161 104 217 0.68 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 6_4 - 255 VirC1 PF07015.6 231 8e-06 19.7 0.0 1 1 1.5e-06 6.3e-05 16.7 0.0 2 41 7 46 6 90 0.89 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 7_16 - 248 VirC1 PF07015.6 231 2e-05 18.4 0.7 1 2 4.9e-06 0.00021 15.0 0.1 2 41 7 45 6 62 0.82 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 7_16 - 248 VirC1 PF07015.6 231 2e-05 18.4 0.7 2 2 0.063 2.6 1.6 0.0 82 114 122 154 101 216 0.70 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 1_55 - 252 VirC1 PF07015.6 231 9.1e-05 16.2 2.9 1 3 3.2e-05 0.0013 12.4 0.0 2 40 7 44 6 62 0.77 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 1_55 - 252 VirC1 PF07015.6 231 9.1e-05 16.2 2.9 2 3 0.094 4 1.0 0.1 99 117 80 98 64 111 0.84 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 1_55 - 252 VirC1 PF07015.6 231 9.1e-05 16.2 2.9 3 3 0.047 2 2.0 0.1 83 132 123 171 101 216 0.74 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 3_23 - 250 VirC1 PF07015.6 231 9.9e-05 16.1 0.1 1 1 7.6e-06 0.00032 14.4 0.0 3 44 8 48 6 71 0.79 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 5_19 - 254 VirC1 PF07015.6 231 0.0011 12.6 0.0 1 2 0.014 0.6 3.7 0.0 3 46 8 51 6 64 0.85 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 5_19 - 254 VirC1 PF07015.6 231 0.0011 12.6 0.0 2 2 0.0016 0.065 6.9 0.1 83 156 124 197 108 207 0.89 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 11_2 - 254 VirC1 PF07015.6 231 0.0011 12.6 0.0 1 2 0.00049 0.021 8.5 0.0 3 43 4 44 1 50 0.84 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 11_2 - 254 VirC1 PF07015.6 231 0.0011 12.6 0.0 2 2 0.051 2.1 1.9 0.0 83 125 119 163 114 194 0.77 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 8_18 - 403 TIGR02432 TIGR02432 189 0.00018 15.8 0.0 1 1 9.4e-07 0.00032 15.0 0.0 1 159 217 375 217 383 0.73 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 10_3 - 251 Fer4_NifH PF00142.13 273 2.9e-08 27.8 0.0 1 2 1.3e-07 5.6e-06 20.3 0.0 8 53 15 60 8 86 0.84 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 10_3 - 251 Fer4_NifH PF00142.13 273 2.9e-08 27.8 0.0 2 2 0.0037 0.16 5.7 0.0 142 223 147 228 117 248 0.79 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 6_4 - 255 Fer4_NifH PF00142.13 273 2.5e-07 24.7 0.1 1 1 1.5e-08 6.2e-07 23.4 0.0 8 50 15 57 8 93 0.85 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 5_19 - 254 Fer4_NifH PF00142.13 273 1.1e-05 19.3 0.0 1 1 5.4e-07 2.2e-05 18.3 0.0 8 48 15 55 9 82 0.86 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 7_16 - 248 Fer4_NifH PF00142.13 273 1.4e-05 19.0 0.6 1 1 6.3e-07 2.7e-05 18.1 0.1 8 52 15 58 7 93 0.78 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 3_23 - 250 Fer4_NifH PF00142.13 273 2e-05 18.5 0.0 1 1 9.3e-07 3.9e-05 17.5 0.0 8 59 15 64 8 87 0.77 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 1_55 - 252 Fer4_NifH PF00142.13 273 7.5e-05 16.6 0.0 1 1 3.4e-06 0.00014 15.7 0.0 8 52 15 58 8 87 0.81 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 2_17 - 251 Fer4_NifH PF00142.13 273 0.0002 15.2 0.1 1 1 1.1e-05 0.00046 14.0 0.0 8 60 15 65 8 91 0.69 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 11_2 - 254 Fer4_NifH PF00142.13 273 0.0039 11.0 0.9 1 1 0.00025 0.011 9.5 0.0 8 49 11 52 3 82 0.85 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 8_18 - 403 QueC PF06508.8 210 5.6e-07 23.6 0.0 1 1 5.7e-09 1.9e-06 21.9 0.0 2 177 218 383 217 388 0.81 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 7_16 - 248 AAA_18 PF13238.1 129 0.0012 13.8 1.6 1 1 1.7e-05 0.0028 12.6 0.3 8 80 17 131 15 152 0.77 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 3_23 - 250 AAA_18 PF13238.1 129 0.019 9.9 3.7 1 1 0.0001 0.017 10.1 0.1 8 90 17 104 15 142 0.67 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 7_16 - 248 CbiA PF01656.18 195 3.4e-37 122.3 0.7 1 1 1e-38 4.2e-37 122.0 0.7 1 171 9 198 9 218 0.86 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 10_3 - 251 CbiA PF01656.18 195 8.5e-37 121.0 0.1 1 1 2.5e-38 1.1e-36 120.7 0.1 1 193 9 220 9 222 0.76 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 6_4 - 255 CbiA PF01656.18 195 1.7e-35 116.8 0.1 1 1 4.9e-37 2e-35 116.5 0.1 1 191 9 218 9 222 0.81 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 3_23 - 250 CbiA PF01656.18 195 1.8e-35 116.7 0.2 1 1 5.3e-37 2.2e-35 116.4 0.2 1 174 9 202 9 226 0.78 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 2_17 - 251 CbiA PF01656.18 195 6.9e-35 114.8 0.2 1 1 1.9e-36 8.1e-35 114.6 0.2 1 175 9 201 9 221 0.80 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 1_55 - 252 CbiA PF01656.18 195 2.9e-34 112.8 0.1 1 1 8.7e-36 3.6e-34 112.4 0.1 1 174 9 202 9 217 0.81 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 5_19 - 254 CbiA PF01656.18 195 4.1e-34 112.3 0.1 1 1 1.1e-35 4.8e-34 112.1 0.1 1 193 9 223 9 225 0.75 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 11_2 - 254 CbiA PF01656.18 195 5.5e-31 102.1 0.0 1 1 1.6e-32 6.8e-31 101.8 0.0 1 194 5 221 5 243 0.79 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 2_34 - 263 Methyltransf_30 PF05430.6 124 0.052 7.8 6.3 1 3 0.00013 0.044 8.1 0.1 5 55 27 79 24 83 0.85 # 22524 # 23312 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 2_34 - 263 Methyltransf_30 PF05430.6 124 0.052 7.8 6.3 2 3 0.035 12 0.3 0.4 40 40 140 140 87 185 0.60 # 22524 # 23312 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 2_34 - 263 Methyltransf_30 PF05430.6 124 0.052 7.8 6.3 3 3 0.02 6.7 1.0 0.3 13 53 182 222 171 226 0.72 # 22524 # 23312 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 6_4 - 255 Methyltrn_RNA_2 PF04013.7 199 0.0016 12.6 0.0 1 1 7e-06 0.0023 12.1 0.0 123 177 64 119 23 130 0.79 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 2_29 - 236 RNA_pol_Rpb1_5 PF04998.12 277 0.051 7.4 8.2 1 2 5.5e-05 0.018 8.8 3.7 136 234 30 129 18 154 0.67 # 20208 # 20915 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.257 2_29 - 236 RNA_pol_Rpb1_5 PF04998.12 277 0.051 7.4 8.2 2 2 0.014 4.7 0.9 0.4 159 216 161 217 130 223 0.64 # 20208 # 20915 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.257 8_18 - 403 PAPS_reduct PF01507.14 174 7.2e-07 23.8 0.0 1 1 4.1e-09 1.4e-06 22.9 0.0 2 60 218 277 217 323 0.87 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 1_7 - 322 POT1 PF02765.12 146 0.00027 15.5 0.0 1 1 1.4e-06 0.00047 14.7 0.0 56 103 97 143 76 166 0.88 # 6259 # 7224 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 8_18 - 403 Asn_synthase PF00733.16 255 1.9e-05 18.9 0.0 1 2 0.072 24 -1.2 0.0 16 27 44 55 38 59 0.83 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 8_18 - 403 Asn_synthase PF00733.16 255 1.9e-05 18.9 0.0 2 2 2.1e-07 7.1e-05 17.0 0.0 12 73 210 271 197 306 0.82 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 3_23 - 250 AAA_31 PF13614.1 157 4.8e-18 60.2 0.6 1 1 1.7e-19 7e-18 59.7 0.6 2 152 8 159 7 164 0.89 # 15298 # 16047 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.245 7_16 - 248 AAA_31 PF13614.1 157 9.4e-16 52.7 0.9 1 1 3.4e-17 1.4e-15 52.1 0.9 1 152 7 157 7 162 0.77 # 9885 # 10628 # 1 # ID=7_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.239 1_55 - 252 AAA_31 PF13614.1 157 1.6e-14 48.7 0.4 1 1 6e-16 2.5e-14 48.1 0.4 1 152 7 157 7 162 0.84 # 49703 # 50458 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.265 6_4 - 255 AAA_31 PF13614.1 157 1.2e-13 45.8 0.5 1 1 5.2e-15 2.2e-13 45.0 0.5 1 134 7 141 7 162 0.80 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 2_17 - 251 AAA_31 PF13614.1 157 2.8e-13 44.7 0.9 1 1 2.5e-14 1.1e-12 42.8 0.9 2 152 8 157 7 162 0.74 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 11_2 - 254 AAA_31 PF13614.1 157 5.7e-13 43.7 0.1 1 1 3e-14 1.3e-12 42.6 0.1 2 150 4 151 3 158 0.78 # 734 # 1495 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269 10_3 - 251 AAA_31 PF13614.1 157 6e-13 43.6 0.9 1 1 2.2e-14 9.4e-13 43.0 0.9 2 152 8 158 7 163 0.80 # 1518 # 2270 # -1 # ID=10_3;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.272 5_19 - 254 AAA_31 PF13614.1 157 4.3e-12 40.8 0.1 1 1 1.7e-13 7e-12 40.1 0.1 2 155 8 161 7 163 0.81 # 18120 # 18881 # -1 # ID=5_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.232 3_45 - 173 RHSP PF07999.6 439 0.00053 13.2 0.0 1 1 6.1e-06 0.00069 12.9 0.0 267 333 33 100 25 110 0.89 # 27428 # 27946 # 1 # ID=3_45;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.374 3_3 - 181 RHSP PF07999.6 439 0.00059 13.1 0.0 1 1 6.8e-06 0.00076 12.7 0.0 267 333 41 108 33 118 0.89 # 2739 # 3281 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.368 2_49 - 190 RHSP PF07999.6 439 0.0024 11.1 0.1 1 1 2.4e-05 0.0026 10.9 0.1 278 333 65 121 56 185 0.83 # 36199 # 36768 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 6_4 - 255 AAA_10 PF12846.2 304 0.0019 12.3 0.4 1 1 1.5e-05 0.005 10.9 0.3 11 76 17 89 15 225 0.75 # 4759 # 5523 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.250 5_2 - 284 Mqo PF06039.10 489 0.00011 15.0 0.7 1 1 4.5e-07 0.00015 14.6 0.7 99 214 105 218 88 248 0.89 # 1070 # 1921 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_34 - 263 DUF3584 PF12128.3 1201 9.9e-06 17.7 12.2 1 1 1.1e-07 1.2e-05 17.4 12.2 256 427 47 225 34 232 0.82 # 22524 # 23312 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.260 5_16 - 197 DUF3584 PF12128.3 1201 0.00011 14.2 7.4 1 1 1.2e-06 0.00013 14.0 7.4 375 479 44 149 26 166 0.84 # 16060 # 16650 # 1 # ID=5_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 7_6 - 176 DUF3584 PF12128.3 1201 0.00015 13.8 1.4 1 1 1.5e-06 0.00017 13.6 1.4 261 331 53 124 33 139 0.88 # 2037 # 2564 # -1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.263 15_1 - 482 CmcI PF04989.7 206 9.6e-05 16.4 0.8 1 1 1.1e-06 0.00018 15.5 0.8 63 132 195 265 172 270 0.81 # 22 # 1467 # 1 # ID=15_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 2_17 - 251 CmcI PF04989.7 206 0.0011 12.9 0.2 1 1 1.7e-05 0.0028 11.6 0.1 32 90 5 64 1 88 0.84 # 9757 # 10509 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.270 9_7 - 323 Guanylate_kin PF00625.16 183 0.0019 12.3 0.0 1 1 1.8e-05 0.0061 10.6 0.0 5 97 87 173 84 176 0.80 # 6767 # 7735 # 1 # ID=9_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_38 - 103 AAA_PrkA PF08298.6 358 0.00018 14.9 0.3 1 1 6.3e-07 0.00021 14.6 0.3 15 91 9 82 2 90 0.82 # 30916 # 31224 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 7_24 - 165 Terminase_3 PF04466.8 387 0.00017 15.3 2.7 1 1 5.7e-07 0.00019 15.2 2.7 131 221 6 91 2 127 0.78 # 14990 # 15484 # 1 # ID=7_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.279 9_9 - 216 Sulfotransfer_1 PF00685.22 267 0.00065 13.6 0.1 1 1 2.8e-06 0.00095 13.1 0.1 83 121 101 136 16 180 0.80 # 9036 # 9683 # 1 # ID=9_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.276 8_18 - 403 tRNA_Me_trans PF03054.11 356 0.00042 13.5 0.0 1 1 2e-06 0.00067 12.8 0.0 2 31 217 247 216 269 0.82 # 15183 # 16391 # 1 # ID=8_18;partial=01;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.305 1_52 - 413 AAA_28 PF13521.1 163 0.00079 14.0 0.0 1 2 0.00047 0.16 6.5 0.0 1 19 25 43 25 56 0.91 # 46376 # 47614 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_52 - 413 AAA_28 PF13521.1 163 0.00079 14.0 0.0 2 2 0.0012 0.42 5.2 0.0 68 109 148 188 123 203 0.77 # 46376 # 47614 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ce9a3738-fcea-4684-b9cf-be441e796f2b # Target file: checkm_output/bins/pGCA_000019705.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000019705.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ce9a3738-fcea-4684-b9cf-be441e796f2b checkm_output/bins/pGCA_000019705.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:07 2020 # [ok]