# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 761 Methyltransf_12 PF08242.7 99 5.4e-07 23.9 4.9 1 2 0.053 10 0.6 0.1 23 61 89 124 75 133 0.77 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_11 - 761 Methyltransf_12 PF08242.7 99 5.4e-07 23.9 4.9 2 2 8.4e-09 1.7e-06 22.4 0.0 1 98 559 655 559 656 0.92 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_33 - 973 UPF0020 PF01170.13 180 9.5e-06 19.1 0.0 1 2 2.8e-06 0.00056 13.4 0.0 31 77 335 392 326 426 0.76 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_33 - 973 UPF0020 PF01170.13 180 9.5e-06 19.1 0.0 2 2 0.0046 0.9 2.9 0.0 96 118 429 452 414 460 0.77 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_10 - 194 RrnaAD PF00398.15 262 3.5e-06 20.0 0.1 1 2 2.3e-07 2.3e-05 17.4 0.0 40 97 80 135 67 141 0.79 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_10 - 194 RrnaAD PF00398.15 262 3.5e-06 20.0 0.1 2 2 0.022 2.2 1.1 0.0 194 234 137 176 132 183 0.77 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_11 - 761 RrnaAD PF00398.15 262 8.8e-06 18.7 0.1 1 1 8.9e-08 8.8e-06 18.7 0.1 14 98 538 619 535 645 0.87 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_164 - 198 CoaE PF01121.15 180 4.5e-05 16.8 0.1 1 2 1.6e-06 0.00032 14.0 0.0 1 56 8 65 8 85 0.75 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 CoaE PF01121.15 180 4.5e-05 16.8 0.1 2 2 0.018 3.5 0.8 0.1 124 165 121 163 89 171 0.74 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_192 - 149 SSB PF00436.20 104 2.4e-39 127.3 0.1 1 1 3.1e-41 3.1e-39 127.0 0.1 1 104 1 102 1 102 0.98 # 145130 # 145576 # 1 # ID=1_192;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_39 - 168 SSB PF00436.20 104 4e-23 75.2 0.7 1 1 7.2e-25 7.1e-23 74.4 0.7 1 104 1 101 1 101 0.95 # 41657 # 42160 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.313 1_10 - 194 Methyltransf_18 PF12847.2 112 1.2e-06 23.0 0.0 1 1 8.5e-09 1.7e-06 22.5 0.0 5 87 74 150 70 171 0.81 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_67 - 698 UvrD_C_2 PF13538.1 104 6e-13 42.8 0.2 1 1 1.7e-14 3.3e-12 40.4 0.1 47 103 542 621 503 622 0.74 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_184 - 473 AAA_22 PF13401.1 131 1.9e-08 28.4 3.0 1 1 1.7e-09 1.7e-07 25.3 0.0 7 123 37 150 30 156 0.70 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_164 - 198 AAA_22 PF13401.1 131 7.5e-05 16.8 0.1 1 1 1.5e-06 0.00015 15.8 0.1 6 30 9 33 3 68 0.81 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_135 - 153 Methyltransf_11 PF08241.7 95 2.6e-05 18.6 0.0 1 2 0.00016 0.016 9.6 0.0 1 66 6 67 6 69 0.64 # 109244 # 109702 # 1 # ID=1_135;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.281 1_135 - 153 Methyltransf_11 PF08241.7 95 2.6e-05 18.6 0.0 2 2 0.0011 0.11 6.9 0.0 75 95 95 115 88 115 0.90 # 109244 # 109702 # 1 # ID=1_135;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.281 1_10 - 194 Methyltransf_11 PF08241.7 95 0.00071 14.0 0.0 1 1 1.3e-05 0.0013 13.2 0.0 3 66 77 142 75 155 0.87 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_9 - 485 DNA_methylase PF00145.12 335 1.8e-49 162.5 7.7 1 1 4.7e-51 4.6e-49 161.1 0.7 2 335 171 474 170 474 0.79 # 8234 # 9688 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.266 1_144 - 285 DNA_methylase PF00145.12 335 5.4e-46 151.0 0.0 1 2 9.7e-31 9.5e-29 94.3 0.0 5 169 6 167 2 201 0.87 # 114953 # 115807 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_144 - 285 DNA_methylase PF00145.12 335 5.4e-46 151.0 0.0 2 2 7.7e-19 7.6e-17 55.2 0.0 279 334 220 280 183 281 0.82 # 114953 # 115807 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_184 - 473 DNA_pol3_delta2 PF13177.1 162 4.7e-43 140.5 0.0 1 1 2.4e-45 4.7e-43 140.5 0.0 2 161 17 172 16 173 0.95 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_136 - 255 N6_N4_Mtase PF01555.13 231 3.3e-21 69.7 2.4 1 1 4.7e-23 4.6e-21 69.2 2.4 30 231 39 239 24 239 0.75 # 109733 # 110497 # 1 # ID=1_136;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_159 - 257 N6_N4_Mtase PF01555.13 231 3.1e-10 33.7 1.0 1 2 2.9e-06 0.00028 14.2 0.0 196 224 98 126 83 131 0.91 # 123875 # 124645 # 1 # ID=1_159;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.283 1_159 - 257 N6_N4_Mtase PF01555.13 231 3.1e-10 33.7 1.0 2 2 3.6e-07 3.5e-05 17.2 0.9 6 94 146 247 141 254 0.78 # 123875 # 124645 # 1 # ID=1_159;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.283 1_164 - 198 AAA_17 PF13207.1 121 1.2e-10 36.1 2.6 1 1 2.7e-12 2.7e-10 35.0 2.6 1 110 9 140 9 191 0.63 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 AAA_17 PF13207.1 121 5.1e-05 18.0 0.3 1 1 1.4e-06 0.00014 16.5 0.3 3 80 38 124 37 441 0.85 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_164 - 198 AAA_21 PF13304.1 303 0.00038 14.3 4.5 1 1 3.4e-06 0.00068 13.5 4.4 1 117 9 107 9 176 0.46 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 Miro PF08477.8 119 0.0012 13.2 0.5 1 1 9.6e-05 0.019 9.4 0.4 2 71 10 116 10 160 0.66 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 Zeta_toxin PF06414.7 201 0.00017 14.6 1.3 1 2 0.00017 0.016 8.1 0.0 18 41 36 59 25 66 0.87 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_184 - 473 Zeta_toxin PF06414.7 201 0.00017 14.6 1.3 2 2 0.0021 0.21 4.5 0.5 86 174 248 331 215 361 0.76 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_164 - 198 Zeta_toxin PF06414.7 201 0.00027 13.9 0.0 1 1 7.6e-06 0.00075 12.5 0.0 17 40 8 31 2 41 0.85 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 AAA_16 PF13191.1 185 8.4e-05 16.5 0.0 1 1 2.7e-06 0.00026 14.9 0.0 26 45 9 27 2 37 0.88 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 AAA_16 PF13191.1 185 0.00015 15.7 0.0 1 1 7.8e-06 0.00076 13.3 0.0 3 51 15 61 13 75 0.78 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_164 - 198 AAA_23 PF13476.1 202 0.001 13.3 7.8 1 1 4.7e-05 0.0092 10.1 7.8 21 123 9 174 4 196 0.49 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 AAA_18 PF13238.1 129 8.9e-16 52.2 2.1 1 1 1.8e-17 1.2e-15 51.9 2.1 1 117 10 145 10 170 0.88 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 AAA_18 PF13238.1 129 0.0011 13.2 0.0 1 1 1.7e-05 0.0011 13.2 0.0 3 82 39 123 38 156 0.55 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_25 - 801 AAA_18 PF13238.1 129 0.015 9.5 0.0 1 1 0.00023 0.015 9.5 0.0 5 42 386 426 385 489 0.78 # 19831 # 22233 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.276 1_25 - 801 CbiA PF01656.18 195 0.0013 12.0 0.0 1 1 2.1e-05 0.0041 10.4 0.0 6 99 386 512 382 524 0.61 # 19831 # 22233 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.276 1_135 - 153 Methyltransf_25 PF13649.1 101 2.9e-12 40.8 0.0 1 1 3.8e-14 3.7e-12 40.4 0.0 1 99 5 109 5 111 0.93 # 109244 # 109702 # 1 # ID=1_135;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.281 1_10 - 194 Methyltransf_25 PF13649.1 101 0.00011 16.5 0.0 1 1 1.7e-06 0.00017 15.8 0.0 5 74 78 145 74 170 0.75 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_184 - 473 AAA_14 PF13173.1 128 1.9e-05 18.5 0.0 1 1 9.6e-08 1.9e-05 18.5 0.0 4 96 36 150 34 170 0.64 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_44 - 122 B5 PF03484.10 70 0.0013 12.4 0.1 1 1 1.9e-05 0.0037 11.0 0.0 11 41 77 105 74 114 0.85 # 45108 # 45473 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_164 - 198 AAA_29 PF13555.1 62 7.5e-05 16.1 0.0 1 1 7.6e-07 0.00015 15.2 0.0 26 39 10 23 2 25 0.85 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 AAA PF00004.24 132 5.1e-17 56.2 2.4 1 2 4.8e-18 9.5e-16 52.1 0.0 2 127 38 167 37 172 0.78 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_184 - 473 AAA PF00004.24 132 5.1e-17 56.2 2.4 2 2 0.0099 1.9 2.5 0.9 28 74 253 300 230 364 0.73 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_67 - 698 UvrD_C PF13361.1 351 2.6e-34 113.0 23.0 1 1 1.3e-36 2.6e-34 113.0 23.0 1 350 294 625 294 626 0.84 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_13 - 704 PAPS_reduct PF01507.14 174 2.1e-26 86.7 1.7 1 2 0.019 3.6 1.2 0.2 37 98 65 126 50 193 0.76 # 13344 # 15455 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.259 1_13 - 704 PAPS_reduct PF01507.14 174 2.1e-26 86.7 1.7 2 2 7.9e-28 1.6e-25 83.8 0.0 2 171 416 615 415 618 0.90 # 13344 # 15455 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.259 1_164 - 198 Sigma54_activat PF00158.21 168 0.00071 12.9 0.0 1 1 7.3e-06 0.0014 11.9 0.0 20 45 5 30 2 44 0.83 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 MMR_HSR1 PF01926.18 116 2.9e-05 17.9 0.3 1 1 5.5e-07 0.00011 16.1 0.3 2 93 10 132 9 193 0.58 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_33 - 973 N6_Mtase PF02384.11 311 8.1e-19 61.6 0.1 1 1 1.9e-20 1.9e-18 60.4 0.1 4 240 288 558 286 606 0.77 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_136 - 255 N6_Mtase PF02384.11 311 0.0014 11.6 1.7 1 2 7e-05 0.0069 9.3 0.0 108 164 6 64 2 74 0.82 # 109733 # 110497 # 1 # ID=1_136;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_136 - 255 N6_Mtase PF02384.11 311 0.0014 11.6 1.7 2 2 0.023 2.2 1.0 0.1 9 22 188 201 186 205 0.89 # 109733 # 110497 # 1 # ID=1_136;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_164 - 198 DUF258 PF03193.11 161 6.3e-05 16.1 0.0 1 2 1.1e-06 0.00022 14.3 0.0 35 60 7 32 1 61 0.80 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 DUF258 PF03193.11 161 6.3e-05 16.1 0.0 2 2 0.053 10 -0.9 0.0 4 40 90 124 87 125 0.74 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_25 - 801 TraG-D_C PF12696.2 128 0.00066 13.4 0.0 1 1 8.8e-06 0.0017 12.1 0.0 1 83 636 713 636 740 0.88 # 19831 # 22233 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.276 1_164 - 198 AAA_33 PF13671.1 143 1.6e-07 25.1 0.0 1 1 1.4e-08 1.4e-06 22.1 0.0 2 47 10 70 9 163 0.53 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 AAA_33 PF13671.1 143 0.0021 11.8 0.8 1 1 0.00012 0.012 9.3 0.1 3 21 38 56 37 156 0.92 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_33 - 973 Methyltransf_26 PF13659.1 117 5.5e-12 39.7 0.0 1 1 3.3e-13 1.1e-11 38.7 0.0 3 116 335 497 333 498 0.71 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_11 - 761 Methyltransf_26 PF13659.1 117 1.2e-08 28.9 0.0 1 1 7.4e-10 2.4e-08 27.9 0.0 4 116 558 661 555 662 0.77 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_159 - 257 Methyltransf_26 PF13659.1 117 1.8e-06 21.9 0.0 1 1 1.1e-05 0.00035 14.5 0.0 5 115 98 209 95 211 0.80 # 123875 # 124645 # 1 # ID=1_159;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.283 1_135 - 153 Methyltransf_26 PF13659.1 117 4.4e-05 17.4 0.0 1 1 8.8e-06 0.00029 14.7 0.0 57 116 50 118 45 119 0.80 # 109244 # 109702 # 1 # ID=1_135;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.281 1_144 - 285 Methyltransf_26 PF13659.1 117 0.0013 12.7 0.0 1 1 5.9e-05 0.0019 12.1 0.0 8 87 8 78 6 110 0.76 # 114953 # 115807 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_136 - 255 Methyltransf_26 PF13659.1 117 0.0017 12.2 0.0 1 2 0.0021 0.069 7.1 0.0 54 88 7 37 3 84 0.75 # 109733 # 110497 # 1 # ID=1_136;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_136 - 255 Methyltransf_26 PF13659.1 117 0.0017 12.2 0.0 2 2 0.041 1.3 2.9 0.0 5 45 204 243 201 250 0.87 # 109733 # 110497 # 1 # ID=1_136;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_184 - 473 AAA_30 PF13604.1 196 0.00019 14.9 0.0 1 1 1.2e-05 0.0023 11.4 0.0 23 126 39 146 29 155 0.64 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_11 - 761 MTS PF05175.9 170 3.8e-10 33.3 0.0 1 1 1.1e-11 1.1e-09 31.8 0.0 23 143 546 663 542 683 0.81 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_10 - 194 MTS PF05175.9 170 7.1e-05 16.1 0.1 1 2 0.084 8.3 -0.4 0.0 75 113 25 63 18 70 0.66 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_10 - 194 MTS PF05175.9 170 7.1e-05 16.1 0.1 2 2 2.5e-06 0.00025 14.3 0.1 29 103 68 141 63 147 0.87 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_164 - 198 ABC_tran PF00005.22 137 1.3e-05 19.4 0.3 1 1 2e-07 2e-05 18.8 0.2 13 35 9 31 4 115 0.83 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 ABC_tran PF00005.22 137 0.0081 10.3 0.0 1 1 8.3e-05 0.0081 10.3 0.0 11 41 34 66 30 108 0.81 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_164 - 198 TIGR03263 TIGR03263 180 4.5e-10 33.0 1.4 1 1 3.8e-12 7.5e-10 32.3 1.4 3 145 9 152 7 197 0.63 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_33 - 973 Eco57I PF07669.6 106 4.5e-10 33.8 2.7 1 2 2.5e-11 5e-09 30.4 0.1 1 104 439 551 439 553 0.84 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_33 - 973 Eco57I PF07669.6 106 4.5e-10 33.8 2.7 2 2 0.023 4.5 1.6 0.0 63 94 648 679 640 681 0.87 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_136 - 255 AviRa PF11599.3 246 0.0012 11.7 0.0 1 1 9.9e-06 0.0019 11.0 0.0 154 210 7 66 2 80 0.77 # 109733 # 110497 # 1 # ID=1_136;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.306 1_67 - 698 AAA_19 PF13245.1 76 3.7e-08 27.0 0.0 1 1 7.1e-10 1.4e-07 25.1 0.0 6 75 24 101 22 102 0.87 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_171 - 120 RmlD_sub_bind PF04321.12 287 0.0018 11.0 0.0 1 1 1.4e-05 0.0027 10.4 0.0 146 179 3 36 2 43 0.93 # 132855 # 133214 # 1 # ID=1_171;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.239 1_25 - 801 AAA_10 PF12846.2 304 1.1e-20 68.1 0.1 1 1 1.1e-22 2.2e-20 67.1 0.1 5 297 383 707 380 714 0.83 # 19831 # 22233 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.276 1_11 - 761 Methyltransf_31 PF13847.1 152 8.5e-05 16.0 2.0 1 1 3.2e-06 0.00032 14.2 0.0 2 112 553 662 552 716 0.71 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_33 - 973 Methyltransf_31 PF13847.1 152 0.024 8.1 6.4 1 1 3.6e-05 0.0036 10.8 0.1 2 43 331 391 330 397 0.75 # 30918 # 33836 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_67 - 698 Viral_helicase1 PF01443.13 234 5.4e-05 16.6 0.2 1 3 0.0083 1.6 2.0 0.0 2 13 33 44 32 89 0.78 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_67 - 698 Viral_helicase1 PF01443.13 234 5.4e-05 16.6 0.2 2 3 0.069 14 -1.0 0.0 62 105 230 274 221 324 0.71 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_67 - 698 Viral_helicase1 PF01443.13 234 5.4e-05 16.6 0.2 3 3 2.7e-05 0.0054 10.1 0.0 158 233 513 622 400 623 0.83 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_25 - 801 DUF853 PF05872.7 504 0.00057 12.1 0.0 1 1 5e-06 0.00098 11.3 0.0 28 73 386 432 381 448 0.88 # 19831 # 22233 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.276 1_164 - 198 CPT PF07931.7 174 0.00092 12.7 0.1 1 2 5.5e-05 0.011 9.2 0.0 3 23 9 29 7 33 0.90 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 CPT PF07931.7 174 0.00092 12.7 0.1 2 2 0.016 3.1 1.2 0.0 100 159 110 183 96 196 0.73 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 Guanylate_kin PF00625.16 183 5e-06 19.9 2.9 1 1 5.3e-08 1e-05 18.9 2.9 4 180 9 196 6 197 0.64 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 Sigma54_activ_2 PF14532.1 138 0.0012 12.7 0.0 1 1 1.2e-05 0.0024 11.8 0.0 24 47 10 33 4 44 0.85 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_10 - 194 TIGR00755 TIGR00755 256 2.8e-05 17.0 0.1 1 1 1.9e-07 3.7e-05 16.7 0.1 33 93 74 136 45 167 0.78 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_11 - 761 Methyltransf_23 PF13489.1 161 0.00024 14.7 0.0 1 1 2.8e-06 0.00055 13.5 0.0 20 128 552 677 538 689 0.69 # 10561 # 12843 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.266 1_164 - 198 RNA_helicase PF00910.17 107 0.00025 15.1 0.1 1 1 4.4e-06 0.00043 14.3 0.1 1 57 10 68 10 102 0.74 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_184 - 473 RNA_helicase PF00910.17 107 0.00053 14.0 1.3 1 1 5.2e-05 0.0051 10.9 0.0 2 26 38 62 37 83 0.85 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_39 - 168 tRNA_anti-codon PF01336.20 75 1.1e-05 19.1 0.0 1 1 2.5e-07 2.5e-05 18.0 0.0 27 73 46 99 40 101 0.83 # 41657 # 42160 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.313 1_192 - 149 tRNA_anti-codon PF01336.20 75 0.00011 15.9 0.0 1 1 2.1e-06 0.00021 15.0 0.0 27 73 46 100 37 102 0.81 # 145130 # 145576 # 1 # ID=1_192;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_67 - 698 UvrD-helicase PF00580.16 315 2.7e-43 142.2 14.0 1 1 1.4e-45 2.7e-43 142.2 14.0 1 314 17 288 17 289 0.86 # 58762 # 60855 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.231 1_10 - 194 Spermine_synth PF01564.12 246 4.3e-06 19.7 0.2 1 1 2.5e-08 4.9e-06 19.5 0.2 55 158 52 144 4 165 0.82 # 9742 # 10323 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_164 - 198 AAA_28 PF13521.1 163 6.6e-06 20.0 0.0 1 1 6.8e-08 1.3e-05 19.0 0.0 2 48 10 56 9 68 0.86 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_168 - 118 Herpes_Helicase PF02689.9 819 0.00028 12.5 0.5 1 1 1.7e-06 0.00033 12.3 0.5 134 175 60 101 48 116 0.80 # 131682 # 132035 # 1 # ID=1_168;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_184 - 473 AAA_5 PF07728.9 139 1.7e-05 18.4 0.0 1 1 1.6e-06 0.00016 15.3 0.0 3 91 38 139 36 144 0.85 # 138946 # 140364 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_164 - 198 AAA_5 PF07728.9 139 9e-05 16.1 0.1 1 1 2.6e-06 0.00025 14.6 0.0 2 20 10 28 9 38 0.92 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 1_164 - 198 APS_kinase PF01583.15 157 0.00026 14.5 0.0 1 1 2.8e-06 0.00054 13.5 0.0 3 25 8 30 6 40 0.88 # 126710 # 127303 # 1 # ID=1_164;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.274 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bd661629-cb13-4202-a773-800088a4bd73 # Target file: checkm_output/bins/pGCA_000019305.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000019305.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bd661629-cb13-4202-a773-800088a4bd73 checkm_output/bins/pGCA_000019305.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:05 2020 # [ok]