# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 206 Seryl_tRNA_N PF02403.17 108 9.9e-05 14.1 4.9 1 1 4.4e-06 0.00019 13.2 4.9 38 90 30 82 23 98 0.58 # 12412 # 13029 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 450 Saccharop_dh PF03435.13 386 0.00023 11.9 0.0 1 2 2.7e-05 0.0012 9.6 0.0 2 33 7 36 7 39 0.90 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Saccharop_dh PF03435.13 386 0.00023 11.9 0.0 2 2 0.031 1.4 -0.5 0.0 2 38 163 197 162 214 0.81 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_13 - 673 IstB_IS21 PF01695.12 178 0.00012 13.3 0.1 1 3 4.2e-05 0.0018 9.4 0.0 34 61 253 284 220 302 0.68 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 IstB_IS21 PF01695.12 178 0.00012 13.3 0.1 2 3 0.078 3.4 -1.2 0.0 91 118 359 386 351 393 0.76 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 IstB_IS21 PF01695.12 178 0.00012 13.3 0.1 3 3 0.051 2.2 -0.6 0.0 112 151 503 542 491 559 0.76 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_43 - 262 MipZ PF09140.6 261 4.7e-08 24.1 1.5 1 2 9.3e-09 4.1e-07 21.0 0.2 2 131 3 149 2 156 0.61 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_43 - 262 MipZ PF09140.6 261 4.7e-08 24.1 1.5 2 2 0.016 0.71 0.6 0.1 29 62 165 201 153 238 0.72 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_43 - 262 YhjQ PF06564.7 244 3.6e-11 34.6 0.0 1 1 1e-12 4.5e-11 34.2 0.0 1 149 1 148 1 179 0.79 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_28 - 450 3HCDH_N PF02737.13 180 1.7e-08 26.1 0.0 1 2 0.00031 0.014 6.8 0.0 4 34 8 38 5 45 0.93 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 3HCDH_N PF02737.13 180 1.7e-08 26.1 0.0 2 2 2.2e-07 9.6e-06 17.1 0.0 2 49 162 209 161 252 0.82 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 GIDA PF01134.17 392 1.3e-06 19.2 0.8 1 3 3.9e-06 0.00017 12.2 0.0 3 48 7 59 5 87 0.83 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 GIDA PF01134.17 392 1.3e-06 19.2 0.8 2 3 0.0024 0.11 3.0 0.0 3 33 163 193 161 198 0.89 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 GIDA PF01134.17 392 1.3e-06 19.2 0.8 3 3 0.026 1.1 -0.4 0.0 309 366 252 300 196 302 0.59 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox_2 PF07992.9 201 5.4e-40 129.1 2.5 1 3 2.3e-25 1e-23 76.0 0.1 3 160 7 192 5 199 0.85 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox_2 PF07992.9 201 5.4e-40 129.1 2.5 2 3 6.2e-09 2.7e-07 22.3 0.4 3 123 163 260 162 264 0.73 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox_2 PF07992.9 201 5.4e-40 129.1 2.5 3 3 2.3e-12 1e-10 33.5 0.0 163 200 264 302 261 303 0.90 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_13 - 673 DUF87 PF01935.12 229 3e-09 28.7 2.1 1 2 0.032 1.4 0.4 0.4 128 198 115 181 80 199 0.51 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 DUF87 PF01935.12 229 3e-09 28.7 2.1 2 2 6.8e-11 3e-09 28.7 2.1 16 224 263 482 254 487 0.62 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 AAA_22 PF13401.1 131 1.3e-06 20.4 0.1 1 2 2.8e-06 0.00012 14.0 0.0 6 104 272 369 267 389 0.69 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 AAA_22 PF13401.1 131 1.3e-06 20.4 0.1 2 2 0.0064 0.28 3.1 0.0 71 108 485 521 455 550 0.69 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_18 - 157 tRNA_anti-like PF12869.2 144 2.6e-05 15.5 0.1 1 1 9.8e-07 4.3e-05 14.8 0.1 6 57 70 136 67 151 0.89 # 13385 # 13855 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.427 1_43 - 262 SRP54 PF00448.17 196 2.8e-05 15.3 0.1 1 2 7e-05 0.0031 8.7 0.0 11 39 12 40 1 43 0.85 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_43 - 262 SRP54 PF00448.17 196 2.8e-05 15.3 0.1 2 2 0.0012 0.051 4.7 0.0 20 92 56 125 52 173 0.74 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_28 - 450 NAD_binding_7 PF13241.1 103 2.4e-06 19.6 0.0 1 2 0.001 0.044 5.9 0.0 6 39 2 35 1 116 0.81 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_7 PF13241.1 103 2.4e-06 19.6 0.0 2 2 2.1e-05 0.00092 11.3 0.0 6 45 158 215 153 273 0.65 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_13 - 673 AAA_17 PF13207.1 121 0.0061 9.2 6.6 1 1 0.0043 0.19 4.3 6.6 3 16 274 287 272 603 0.93 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_4 - 227 AAA_21 PF13304.1 303 0.00015 13.5 0.3 1 1 5.7e-06 0.00025 12.8 0.0 3 78 9 84 7 114 0.85 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_34 - 341 ADH_zinc_N_2 PF13602.1 127 6e-14 44.8 0.0 1 1 2.4e-15 1.1e-13 44.0 0.0 14 127 207 335 194 335 0.78 # 29019 # 30041 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_43 - 262 MobB PF03205.9 140 0.0002 12.8 0.1 1 1 1.1e-05 0.00047 11.6 0.1 10 45 12 45 2 92 0.66 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_34 - 341 ADH_zinc_N PF00107.21 130 3.3e-15 47.6 0.0 1 1 1.2e-16 5.2e-15 46.9 0.0 1 89 162 248 162 280 0.91 # 29019 # 30041 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_43 - 262 ArsA_ATPase PF02374.10 305 6.2e-13 40.1 0.6 1 1 5.9e-14 2.6e-12 38.1 0.6 1 141 1 131 1 209 0.78 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_4 - 227 Zeta_toxin PF06414.7 201 4.7e-17 53.4 0.1 1 1 9e-18 3.9e-16 50.4 0.1 15 195 4 167 2 173 0.86 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_28 - 450 NAD_binding_8 PF13450.1 68 3.8e-08 25.1 0.3 1 2 2.8e-05 0.0012 10.6 0.0 1 30 8 37 8 46 0.87 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_8 PF13450.1 68 3.8e-08 25.1 0.3 2 2 1.1e-05 0.00048 11.9 0.0 1 31 164 194 164 195 0.97 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 F420_oxidored PF03807.12 96 2.8e-05 16.3 1.7 1 2 1.5e-05 0.00067 11.9 0.0 4 36 8 36 5 42 0.88 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 F420_oxidored PF03807.12 96 2.8e-05 16.3 1.7 2 2 0.0092 0.4 3.0 0.4 1 30 161 187 161 256 0.84 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 FAD_binding_3 PF01494.14 356 6.8e-06 17.0 0.3 1 3 0.00037 0.016 5.9 0.0 5 35 7 37 3 42 0.89 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 FAD_binding_3 PF01494.14 356 6.8e-06 17.0 0.3 2 3 0.00052 0.023 5.4 0.0 5 35 163 193 161 205 0.92 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 FAD_binding_3 PF01494.14 356 6.8e-06 17.0 0.3 3 3 0.0065 0.28 1.8 0.1 119 161 208 250 200 269 0.84 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_43 - 262 VirC1 PF07015.6 231 5.4e-13 40.2 0.1 1 2 9.6e-11 4.2e-09 27.5 0.0 1 48 1 48 1 73 0.89 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_43 - 262 VirC1 PF07015.6 231 5.4e-13 40.2 0.1 2 2 1.7e-05 0.00075 10.3 0.0 80 113 113 146 97 256 0.77 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_43 - 262 Fer4_NifH PF00142.13 273 8.2e-08 23.4 0.8 1 2 6.6e-06 0.00029 11.8 0.0 8 70 10 70 2 82 0.81 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_43 - 262 Fer4_NifH PF00142.13 273 8.2e-08 23.4 0.8 2 2 2.1e-05 0.00092 10.1 0.2 181 246 187 252 169 258 0.83 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_13 - 673 Arch_ATPase PF01637.13 234 0.00017 13.0 7.0 1 1 1.5e-06 6.6e-05 14.4 2.4 20 135 270 392 263 501 0.81 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 AAA_16 PF13191.1 185 1.9e-05 16.4 0.1 1 2 0.00017 0.0037 9.0 0.0 24 40 270 286 259 304 0.74 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 AAA_16 PF13191.1 185 1.9e-05 16.4 0.1 2 2 0.0054 0.12 4.1 0.0 113 162 465 511 399 527 0.72 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_4 - 227 AAA_16 PF13191.1 185 0.00021 13.0 0.0 1 1 1.3e-05 0.00029 12.6 0.0 23 103 4 86 1 130 0.74 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_4 - 227 AAA_23 PF13476.1 202 0.00032 12.8 4.2 1 1 1.6e-05 0.00072 11.6 4.2 21 132 7 180 3 222 0.56 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_43 - 262 CbiA PF01656.18 195 8.8e-26 82.2 0.0 1 1 2.5e-27 1.1e-25 81.9 0.0 1 177 4 208 4 233 0.74 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_13 - 673 AAA_14 PF13173.1 128 2.2e-05 16.2 6.8 1 3 5.8e-06 0.00013 13.7 0.2 3 82 271 372 269 386 0.69 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 AAA_14 PF13173.1 128 2.2e-05 16.2 6.8 2 3 0.056 1.2 0.8 0.0 91 123 441 472 402 477 0.76 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 AAA_14 PF13173.1 128 2.2e-05 16.2 6.8 3 3 0.011 0.25 3.0 0.0 33 91 464 529 457 564 0.54 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_4 - 227 AAA_14 PF13173.1 128 0.00015 13.5 0.0 1 1 1.4e-05 0.00032 12.4 0.0 3 72 6 74 4 116 0.66 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_28 - 450 HI0933_like PF03486.9 409 1.7e-08 25.0 0.3 1 3 5.9e-05 0.0026 7.9 0.0 2 35 5 38 4 43 0.93 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 HI0933_like PF03486.9 409 1.7e-08 25.0 0.3 2 3 0.00041 0.018 5.2 0.0 2 36 161 195 160 198 0.91 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 HI0933_like PF03486.9 409 1.7e-08 25.0 0.3 3 3 3.7e-05 0.0016 8.6 0.1 111 164 202 257 196 285 0.77 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_4 - 227 AAA_29 PF13555.1 62 8.7e-06 17.0 0.0 1 1 4.3e-07 1.9e-05 16.0 0.0 26 47 8 29 2 38 0.81 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_13 - 673 TK PF00265.13 176 0.00051 11.4 3.3 1 3 0.074 3.2 -1.0 0.2 35 77 97 140 87 186 0.70 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 TK PF00265.13 176 0.00051 11.4 3.3 2 3 2.5e-05 0.0011 10.3 0.0 5 42 274 311 271 371 0.76 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 TK PF00265.13 176 0.00051 11.4 3.3 3 3 0.041 1.8 -0.2 0.1 57 89 480 512 466 524 0.61 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_28 - 450 Thi4 PF01946.12 230 1.5e-05 15.9 0.0 1 2 2.2e-06 9.9e-05 13.2 0.0 21 57 7 43 3 68 0.88 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Thi4 PF01946.12 230 1.5e-05 15.9 0.0 2 2 0.043 1.9 -0.8 0.0 20 49 162 191 146 194 0.85 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox_3 PF13738.1 203 3.1e-13 42.0 0.1 1 2 1.2e-10 5.1e-09 28.2 0.0 1 198 7 190 7 195 0.75 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox_3 PF13738.1 203 3.1e-13 42.0 0.1 2 2 4e-05 0.0018 10.1 0.0 87 156 206 281 197 299 0.76 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_20 - 515 TraG-D_C PF12696.2 128 5.4e-43 137.7 0.0 1 1 2.5e-44 5.4e-43 137.7 0.0 2 128 282 405 281 405 0.91 # 14085 # 15629 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_13 - 673 TraG-D_C PF12696.2 128 1.5e-05 16.7 0.4 1 1 4.4e-06 9.8e-05 14.0 0.4 15 125 518 659 502 662 0.64 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_28 - 450 NAD_binding_2 PF03446.10 163 9.5e-06 17.3 0.5 1 2 0.00026 0.011 7.2 0.0 6 35 8 37 5 45 0.93 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_2 PF03446.10 163 9.5e-06 17.3 0.5 2 2 0.00031 0.014 7.0 0.1 3 38 161 196 159 283 0.64 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_43 - 262 AAA_31 PF13614.1 157 5.6e-10 31.1 0.2 1 1 2.6e-11 1.2e-09 30.1 0.2 1 151 2 149 2 152 0.83 # 34513 # 35298 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_4 - 227 AAA_33 PF13671.1 143 5.9e-12 37.4 0.0 1 1 1.9e-13 8.5e-12 36.9 0.0 2 137 8 139 7 146 0.81 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_28 - 450 NAD_Gly3P_dh_N PF01210.18 157 8.8e-08 23.8 0.0 1 2 5.8e-06 0.00026 12.5 0.0 4 33 8 37 5 88 0.87 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_Gly3P_dh_N PF01210.18 157 8.8e-08 23.8 0.0 2 2 7.8e-05 0.0034 8.9 0.0 2 33 162 201 161 234 0.69 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 2-Hacid_dh_C PF02826.14 178 9.9e-10 29.6 0.2 1 2 0.00017 0.0037 8.2 0.1 41 70 8 37 3 47 0.92 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 2-Hacid_dh_C PF02826.14 178 9.9e-10 29.6 0.2 2 2 1.1e-07 2.3e-06 18.6 0.0 30 73 153 196 142 215 0.79 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_34 - 341 2-Hacid_dh_C PF02826.14 178 0.00034 11.5 0.0 1 1 2.7e-05 0.0006 10.7 0.0 31 82 146 198 131 210 0.82 # 29019 # 30041 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_28 - 450 XdhC_C PF13478.1 136 6.7e-06 18.2 0.0 1 2 0.0046 0.2 3.7 0.0 2 35 7 40 7 71 0.85 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 XdhC_C PF13478.1 136 6.7e-06 18.2 0.0 2 2 1.2e-05 0.00053 12.1 0.0 1 55 162 218 162 232 0.77 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 ApbA PF02558.11 151 9.4e-07 20.1 1.0 1 2 4.6e-05 0.001 10.3 0.0 3 31 8 36 7 45 0.93 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 ApbA PF02558.11 151 9.4e-07 20.1 1.0 2 2 0.00044 0.0098 7.1 0.2 2 75 163 255 162 265 0.68 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_34 - 341 ApbA PF02558.11 151 0.00014 13.1 0.0 1 1 1e-05 0.00023 12.4 0.0 3 52 157 207 154 260 0.85 # 29019 # 30041 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_13 - 673 FtsK_SpoIIIE PF01580.13 205 1.4e-06 19.7 0.0 1 1 8e-08 3.5e-06 18.3 0.0 39 80 271 308 250 322 0.78 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_28 - 450 Lycopene_cycl PF05834.7 374 0.00038 11.1 0.1 1 3 7.3e-05 0.0032 8.1 0.0 3 40 7 41 6 110 0.78 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Lycopene_cycl PF05834.7 374 0.00038 11.1 0.1 2 3 0.03 1.3 -0.6 0.0 2 36 162 194 162 199 0.84 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Lycopene_cycl PF05834.7 374 0.00038 11.1 0.1 3 3 0.072 3.2 -1.8 0.0 90 141 203 258 182 269 0.72 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_4 - 227 ABC_tran PF00005.22 137 5.1e-06 18.6 0.3 1 1 1.9e-07 8.4e-06 17.9 0.3 12 80 6 109 2 216 0.72 # 1890 # 2570 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.369 1_28 - 450 K_oxygenase PF13434.1 341 1.8e-09 28.6 0.1 1 3 0.058 2.6 -1.5 0.0 6 37 7 37 3 39 0.77 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 K_oxygenase PF13434.1 341 1.8e-09 28.6 0.1 2 3 1.5e-08 6.5e-07 20.2 0.0 130 205 105 174 94 210 0.80 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 K_oxygenase PF13434.1 341 1.8e-09 28.6 0.1 3 3 0.00055 0.024 5.2 0.2 293 338 214 256 201 259 0.79 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 UDPG_MGDP_dh_N PF03721.9 185 1.7e-09 29.1 1.9 1 2 0.015 0.68 1.0 0.0 5 33 8 36 5 40 0.90 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 UDPG_MGDP_dh_N PF03721.9 185 1.7e-09 29.1 1.9 2 2 1.8e-09 7.7e-08 23.6 1.4 2 86 161 257 160 290 0.67 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_34 - 341 NAD_binding_10 PF13460.1 183 0.00011 13.9 0.2 1 1 8.2e-06 0.00018 13.3 0.2 1 37 154 190 154 210 0.88 # 29019 # 30041 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_28 - 450 NAD_binding_10 PF13460.1 183 0.00035 12.4 0.3 1 2 0.0011 0.025 6.3 0.0 3 34 8 38 7 45 0.89 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_10 PF13460.1 183 0.00035 12.4 0.3 2 2 0.018 0.39 2.4 0.1 12 73 204 260 200 294 0.61 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_13 - 673 AAA_10 PF12846.2 304 1.2e-56 184.0 0.7 1 1 1.1e-57 2.4e-56 183.1 0.7 1 294 270 579 270 588 0.87 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_20 - 515 AAA_10 PF12846.2 304 1.2e-15 49.5 0.1 1 1 7.3e-17 1.6e-15 49.0 0.1 1 302 23 362 23 364 0.71 # 14085 # 15629 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_28 - 450 DAO PF01266.19 358 9.5e-07 19.7 2.5 1 3 3e-05 0.0013 9.3 0.0 3 34 7 38 5 111 0.82 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 DAO PF01266.19 358 9.5e-07 19.7 2.5 2 3 0.00068 0.03 4.9 0.2 2 31 162 191 161 196 0.85 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 DAO PF01266.19 358 9.5e-07 19.7 2.5 3 3 0.00094 0.041 4.4 0.1 151 200 204 256 198 388 0.84 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_9 PF13454.1 156 3.8e-05 15.3 3.4 1 3 0.00062 0.027 6.0 0.0 1 39 7 41 7 60 0.79 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_9 PF13454.1 156 3.8e-05 15.3 3.4 2 3 0.039 1.7 0.1 0.1 1 34 163 191 163 197 0.71 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 NAD_binding_9 PF13454.1 156 3.8e-05 15.3 3.4 3 3 0.00014 0.0063 8.0 0.3 107 155 206 257 201 258 0.73 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox PF00070.22 80 8.1e-26 82.1 0.1 1 2 0.00054 0.024 6.9 0.0 3 34 7 38 5 43 0.92 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 Pyr_redox PF00070.22 80 8.1e-26 82.1 0.1 2 2 1.7e-24 7.7e-23 72.6 0.0 1 77 161 235 161 241 0.96 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_20 - 515 TrwB_AAD_bind PF10412.4 386 6e-36 115.5 0.6 1 1 3.2e-36 7e-35 112.0 0.0 13 381 21 419 13 423 0.74 # 14085 # 15629 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_13 - 673 TrwB_AAD_bind PF10412.4 386 7.8e-08 23.0 0.1 1 2 1.2e-05 0.00026 11.4 0.0 12 56 267 311 257 317 0.75 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 673 TrwB_AAD_bind PF10412.4 386 7.8e-08 23.0 0.1 2 2 6.2e-05 0.0014 9.0 0.1 237 312 493 575 479 664 0.82 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_20 - 515 T4SS-DNA_transf PF02534.9 469 1.3e-132 434.4 6.0 1 1 3.8e-134 1.7e-132 434.0 6.0 45 450 24 443 5 485 0.93 # 14085 # 15629 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_28 - 450 Amino_oxidase PF01593.19 450 0.00035 11.4 0.0 1 1 1.2e-05 0.00051 10.8 0.0 219 261 211 255 148 258 0.87 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 TrkA_N PF02254.13 116 4.3e-09 28.2 0.1 1 2 3e-07 1.3e-05 17.0 0.0 2 31 7 36 6 39 0.89 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 TrkA_N PF02254.13 116 4.3e-09 28.2 0.1 2 2 0.00021 0.0092 7.8 0.0 2 51 163 212 162 219 0.84 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_28 - 450 AlaDh_PNT_C PF01262.16 168 3.8e-06 18.3 0.0 1 1 3.4e-07 7.5e-06 17.3 0.0 17 70 156 209 143 247 0.88 # 21367 # 22716 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_34 - 341 AlaDh_PNT_C PF01262.16 168 8.3e-06 17.2 0.0 1 1 9.4e-07 2.1e-05 15.9 0.0 20 74 152 206 138 228 0.85 # 29019 # 30041 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_13 - 673 AAA_25 PF13481.1 194 0.0004 11.5 0.0 1 1 1.8e-05 0.00077 10.6 0.0 32 61 269 299 242 385 0.79 # 7811 # 9829 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/22f09903-ca0d-4b69-8933-6b5c59842f7d # Target file: checkm_output/bins/pGCA_000019245.3.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000019245.3.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/22f09903-ca0d-4b69-8933-6b5c59842f7d checkm_output/bins/pGCA_000019245.3.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:39:02 2020 # [ok]