# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 229 Thymidylate_kin PF02223.12 186 6e-06 17.8 0.0 1 3 1.3e-06 6.8e-05 14.3 0.0 6 45 11 52 10 62 0.84 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 Thymidylate_kin PF02223.12 186 6e-06 17.8 0.0 2 3 0.037 2 -0.2 0.0 61 97 150 184 128 203 0.74 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 Thymidylate_kin PF02223.12 186 6e-06 17.8 0.0 3 3 0.03 1.6 0.1 0.1 122 169 175 225 155 227 0.59 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 MipZ PF09140.6 261 1.2e-17 55.8 0.6 1 3 1.3e-11 7.2e-10 30.3 0.0 2 51 2 50 1 57 0.85 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 MipZ PF09140.6 261 1.2e-17 55.8 0.6 2 3 7.7e-09 4.1e-07 21.3 0.0 82 140 63 121 46 130 0.86 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 MipZ PF09140.6 261 1.2e-17 55.8 0.6 3 3 0.008 0.43 1.6 0.0 128 177 132 181 126 203 0.82 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 YhjQ PF06564.7 244 1.6e-05 16.3 0.0 1 1 5.8e-07 3.1e-05 15.4 0.0 10 41 9 40 1 53 0.89 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_22 PF13401.1 131 2.4e-05 16.5 0.1 1 1 1.6e-06 8.7e-05 14.7 0.0 14 89 11 81 9 143 0.80 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_3 - 85 Rad60-SLD PF11976.3 72 0.0001 14.0 0.3 1 1 3.5e-06 0.00019 13.2 0.3 6 47 10 54 7 55 0.94 # 2727 # 2981 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_29 - 229 SRP54 PF00448.17 196 2.1e-09 29.1 0.0 1 1 7.6e-11 4.1e-09 28.2 0.0 11 99 11 95 2 145 0.79 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_17 PF13207.1 121 5e-05 16.2 0.1 1 1 2.4e-06 0.00013 14.9 0.1 9 32 11 39 10 211 0.86 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 MobB PF03205.9 140 0.00032 12.5 0.0 1 1 1.2e-05 0.00066 11.4 0.0 3 35 3 35 1 45 0.78 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 ArsA_ATPase PF02374.10 305 3.4e-10 31.4 0.3 1 2 1.6e-11 8.7e-10 30.1 0.2 5 108 5 109 1 131 0.66 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 ArsA_ATPase PF02374.10 305 3.4e-10 31.4 0.3 2 2 0.023 1.2 0.0 0.1 126 134 79 87 64 176 0.64 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 T2SE PF00437.15 272 8.9e-06 16.7 0.1 1 1 2.4e-07 1.3e-05 16.2 0.1 133 261 6 139 2 147 0.82 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 Zeta_toxin PF06414.7 201 3.6e-05 14.9 0.0 1 1 1.3e-06 7e-05 14.0 0.0 25 113 10 99 5 193 0.75 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 VirC1 PF07015.6 231 6.8e-10 30.4 0.0 1 1 2.9e-11 1.6e-09 29.2 0.0 4 127 3 126 1 195 0.69 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 Fer4_NifH PF00142.13 273 1.2e-06 19.9 0.0 1 1 5.1e-08 2.7e-06 18.7 0.0 7 42 8 43 2 94 0.81 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_16 PF13191.1 185 0.00016 13.7 0.0 1 1 4.9e-06 0.00026 13.0 0.0 34 77 11 61 9 148 0.76 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_18 PF13238.1 129 5.5e-07 22.0 0.3 1 2 5.1e-08 2.8e-06 19.7 0.1 8 122 11 169 9 176 0.74 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_18 PF13238.1 129 5.5e-07 22.0 0.3 2 2 0.018 0.96 1.8 0.2 14 36 151 181 126 227 0.60 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 CbiA PF01656.18 195 1.4e-25 81.8 0.2 1 1 1.2e-26 3.3e-25 80.6 0.2 1 171 3 156 3 189 0.74 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 2_21 - 188 CbiA PF01656.18 195 5.6e-07 21.1 0.1 1 2 3.3e-06 9e-05 14.0 0.0 2 24 4 26 3 30 0.88 # 12758 # 13321 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.337 2_21 - 188 CbiA PF01656.18 195 5.6e-07 21.1 0.1 2 2 0.0014 0.038 5.4 0.0 110 181 68 135 43 148 0.73 # 12758 # 13321 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.337 1_29 - 229 AAA_31 PF13614.1 157 5.7e-13 41.1 0.2 1 2 1.1e-12 5.9e-11 34.6 0.0 2 124 2 120 1 120 0.84 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_31 PF13614.1 157 5.7e-13 41.1 0.2 2 2 0.063 3.4 -0.4 0.1 36 63 143 184 125 225 0.48 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_33 PF13671.1 143 0.00022 13.2 0.0 1 1 8.8e-06 0.00047 12.1 0.0 9 87 11 97 9 103 0.67 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_19 PF13245.1 76 1.9e-05 16.4 0.0 1 1 1.2e-06 6.6e-05 14.7 0.0 20 48 11 35 3 49 0.86 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_10 PF12846.2 304 0.00011 13.8 0.0 1 1 4.4e-06 0.00024 12.6 0.0 11 114 11 127 9 226 0.53 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 DUF2075 PF09848.4 352 5.3e-05 14.3 0.1 1 1 1.7e-06 9.4e-05 13.5 0.0 5 90 5 86 2 135 0.83 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 NAD_binding_5 PF07994.7 295 0.00034 12.1 0.0 1 1 8.7e-06 0.00047 11.7 0.0 127 194 151 217 111 226 0.86 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_24 PF13479.1 213 1.4e-05 16.8 0.0 1 1 4.9e-07 2.6e-05 15.9 0.0 11 79 9 90 4 102 0.73 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 AAA_25 PF13481.1 194 5.8e-05 14.6 0.0 1 1 3.6e-06 0.00019 12.9 0.0 42 67 10 37 4 49 0.78 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_29 - 229 APS_kinase PF01583.15 157 4.2e-05 15.3 0.0 1 1 2.9e-06 0.00016 13.4 0.0 11 42 10 41 2 53 0.90 # 28669 # 29355 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2e9d9d5c-322e-4034-8e2b-289b44274531 # Target file: checkm_output/bins/pGCA_000017725.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000017725.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2e9d9d5c-322e-4034-8e2b-289b44274531 checkm_output/bins/pGCA_000017725.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:59 2020 # [ok]