# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 469 3HCDH_N PF02737.13 180 3.4e-05 14.8 0.0 1 1 1.9e-06 6.2e-05 14.0 0.0 1 42 4 45 4 74 0.89 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 324 NmrA PF05368.8 233 2.9e-06 17.9 0.7 1 1 2.1e-07 6.6e-06 16.8 0.7 1 52 152 205 152 275 0.90 # 13697 # 14668 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_9 - 272 AAA_22 PF13401.1 131 7.5e-29 91.8 0.0 1 1 4e-30 1.3e-28 91.1 0.0 2 131 25 171 24 171 0.87 # 6470 # 7285 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 4_1 - 225 AAA_17 PF13207.1 121 1.7e-06 20.2 1.5 1 1 2.6e-07 2.7e-06 19.5 1.5 23 113 24 122 20 220 0.86 # 58 # 732 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_5 - 225 AAA_17 PF13207.1 121 2.7e-05 16.3 1.0 1 1 3.8e-06 4.1e-05 15.7 1.0 23 113 24 122 20 206 0.83 # 3053 # 3727 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_4 - 222 AAA_17 PF13207.1 121 0.00014 14.0 0.9 1 1 2.2e-05 0.00024 13.3 0.9 23 112 24 121 20 177 0.80 # 1857 # 2522 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_16 - 324 ADH_zinc_N PF00107.21 130 5.2e-17 52.9 0.0 1 1 3.7e-18 1.2e-16 51.8 0.0 1 117 160 270 160 285 0.90 # 13697 # 14668 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 2_2 - 469 F420_oxidored PF03807.12 96 9.9e-05 14.1 0.0 1 1 1e-05 0.00032 12.5 0.0 1 47 4 46 4 100 0.77 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_9 - 272 AAA PF00004.24 132 1.7e-06 19.6 0.0 1 2 0.00028 0.009 7.5 0.0 3 14 32 43 31 58 0.89 # 6470 # 7285 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_9 - 272 AAA PF00004.24 132 1.7e-06 19.6 0.0 2 2 6.1e-05 0.0019 9.7 0.0 34 111 110 167 64 189 0.83 # 6470 # 7285 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 2_2 - 469 NAD_binding_2 PF03446.10 163 3.1e-49 158.3 0.0 1 1 1.5e-50 4.8e-49 157.6 0.0 2 163 3 174 2 174 0.97 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_2 - 469 NAD_Gly3P_dh_N PF01210.18 157 3.2e-05 15.0 0.0 1 1 4e-06 0.00013 13.0 0.0 2 47 5 50 4 66 0.78 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_2 - 469 2-Hacid_dh_C PF02826.14 178 2.5e-05 14.7 0.0 1 1 2e-06 6.4e-05 13.5 0.0 37 147 3 120 1 138 0.74 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_2 - 469 ApbA PF02558.11 151 9.8e-07 19.6 0.0 1 1 8.4e-08 2.7e-06 18.2 0.0 1 96 5 95 5 105 0.82 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 324 NAD_binding_10 PF13460.1 183 2.7e-05 15.5 0.1 1 1 1.2e-06 3.8e-05 15.0 0.1 1 38 152 192 152 240 0.88 # 13697 # 14668 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 2_1 - 487 G6PD_N PF00479.17 183 1.5e-59 192.6 0.4 1 1 4.7e-61 1.5e-59 192.6 0.4 1 183 10 186 10 186 0.97 # 175 # 1635 # -1 # ID=2_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.273 1_16 - 324 Epimerase PF01370.16 236 0.00011 12.9 0.0 1 1 5.3e-06 0.00017 12.3 0.0 1 39 152 191 152 216 0.80 # 13697 # 14668 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_9 - 272 DEAD PF00270.24 169 0.00049 10.9 1.7 1 1 4.1e-05 0.0013 9.5 1.0 113 143 121 151 30 164 0.79 # 6470 # 7285 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_16 - 324 DapB_N PF01113.15 124 1.6e-06 19.4 0.2 1 2 0.042 1.4 0.2 0.0 92 103 121 132 115 142 0.84 # 13697 # 14668 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_16 - 324 DapB_N PF01113.15 124 1.6e-06 19.4 0.2 2 2 5.1e-07 1.6e-05 16.1 0.2 3 97 152 242 150 250 0.78 # 13697 # 14668 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 2_2 - 469 IlvN PF07991.7 165 0.00015 12.5 0.1 1 1 2.5e-05 0.0008 10.1 0.0 5 48 3 46 1 61 0.84 # 1699 # 3105 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4bd4459b-d58b-4172-9e58-e4ce75fabdb3 # Target file: checkm_output/bins/pGCA_000016805.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000016805.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4bd4459b-d58b-4172-9e58-e4ce75fabdb3 checkm_output/bins/pGCA_000016805.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:55 2020 # [ok]