# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 869 Mg_chelatase PF01078.16 207 0.00067 11.4 0.0 1 1 1.6e-05 0.0013 10.5 0.0 14 50 489 524 477 545 0.77 # 381 # 2987 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.313 1_75 - 994 Terminase_6 PF03237.10 384 3.8e-05 15.1 0.1 1 1 1.9e-06 0.00015 13.1 0.1 29 135 568 669 556 701 0.82 # 53628 # 56609 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_15 - 104 SSB PF00436.20 104 9.1e-38 121.0 0.1 1 1 1.3e-39 1e-37 120.8 0.1 1 104 1 102 1 102 0.98 # 8479 # 8790 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_43 - 392 DUF87 PF01935.12 229 1.1e-06 21.1 1.0 1 2 1.7e-07 1.3e-05 17.6 0.1 13 49 129 163 120 173 0.90 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 DUF87 PF01935.12 229 1.1e-06 21.1 1.0 2 2 0.015 1.2 1.5 0.1 114 183 187 280 166 306 0.66 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 AAA_22 PF13401.1 131 0.00011 14.9 1.2 1 2 1.6e-05 0.00065 12.5 0.2 6 117 139 283 134 291 0.70 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 AAA_22 PF13401.1 131 0.00011 14.9 1.2 2 2 0.064 2.5 0.8 0.1 68 114 315 388 287 390 0.66 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_2 - 869 AAA_22 PF13401.1 131 0.0006 12.6 0.0 1 1 9.6e-05 0.0038 10.0 0.0 6 32 498 524 495 602 0.73 # 381 # 2987 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.313 1_75 - 994 Terminase_1 PF03354.10 477 7.7e-83 271.0 5.7 1 2 3.7e-11 3e-09 28.3 0.0 1 39 111 150 111 154 0.94 # 53628 # 56609 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_75 - 994 Terminase_1 PF03354.10 477 7.7e-83 271.0 5.7 2 2 9.6e-76 7.7e-74 241.3 5.0 36 468 549 968 545 975 0.93 # 53628 # 56609 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_17 - 1259 SMC_N PF02463.14 220 7.6e-09 27.6 22.6 1 1 9.5e-10 7.6e-08 24.4 22.6 4 200 414 1233 413 1250 0.94 # 9306 # 13082 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_17 - 1259 AAA_23 PF13476.1 202 0.0084 9.0 103.3 1 1 0.001 0.081 5.8 59.2 2 156 415 773 414 865 0.53 # 9306 # 13082 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_35 - 113 tRNA-synt_2e PF02091.10 284 0.00017 13.3 0.0 1 1 2.5e-06 0.0002 13.1 0.0 198 263 19 89 11 107 0.85 # 19881 # 20219 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_17 - 1259 AAA_29 PF13555.1 62 1e-05 17.6 0.0 1 1 6.3e-07 2.5e-05 16.4 0.0 4 48 415 459 413 464 0.86 # 9306 # 13082 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 869 AAA_29 PF13555.1 62 1.4e-05 17.2 0.0 1 1 8.3e-07 3.3e-05 16.0 0.0 17 47 490 520 482 529 0.77 # 381 # 2987 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.313 1_43 - 392 FtsK_SpoIIIE PF01580.13 205 1.8e-18 59.3 0.0 1 1 6.9e-20 2.8e-18 58.7 0.0 23 204 122 293 100 294 0.92 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_2 - 869 FtsK_SpoIIIE PF01580.13 205 2.9e-05 16.2 0.0 1 1 1.5e-06 6.1e-05 15.1 0.0 27 64 481 522 465 526 0.83 # 381 # 2987 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.313 1_43 - 392 ABC_tran PF00005.22 137 0.0002 14.2 0.0 1 1 8.5e-06 0.00068 12.6 0.0 6 73 132 205 127 272 0.67 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 AAA_10 PF12846.2 304 0.00013 14.0 0.0 1 2 0.00058 0.023 6.6 0.0 2 27 138 163 137 172 0.90 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 AAA_10 PF12846.2 304 0.00013 14.0 0.0 2 2 0.0017 0.067 5.1 0.0 223 283 241 313 225 324 0.75 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_2 - 869 AAA_10 PF12846.2 304 0.00033 12.7 0.0 1 2 0.00012 0.0048 8.9 0.0 3 26 498 521 496 527 0.86 # 381 # 2987 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.313 1_2 - 869 AAA_10 PF12846.2 304 0.00033 12.7 0.0 2 2 0.035 1.4 0.8 0.0 92 127 556 654 548 738 0.60 # 381 # 2987 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.313 1_17 - 1259 SbcCD_C PF13558.1 90 9.8e-06 18.1 0.0 1 1 3e-07 2.4e-05 16.8 0.0 32 88 1161 1213 1139 1215 0.85 # 9306 # 13082 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_43 - 392 DUF815 PF05673.8 250 0.00028 12.4 0.0 1 1 6.9e-06 0.00055 11.5 0.0 54 99 138 187 129 199 0.78 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 DUF853 PF05872.7 504 9.7e-05 13.4 0.0 1 2 0.00046 0.037 4.9 0.0 23 61 139 180 124 211 0.70 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_43 - 392 DUF853 PF05872.7 504 9.7e-05 13.4 0.0 2 2 0.00017 0.014 6.3 0.0 277 318 267 310 260 314 0.84 # 25404 # 26579 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_52 - 252 MethyltransfD12 PF02086.10 260 4.2e-31 100.9 7.6 1 1 7.1e-32 1.9e-30 98.7 7.6 1 256 7 228 7 232 0.90 # 30283 # 31038 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_10 - 171 MethyltransfD12 PF02086.10 260 2.2e-13 42.8 0.1 1 1 9.1e-15 2.4e-13 42.7 0.1 148 253 47 144 15 150 0.87 # 6812 # 7324 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.326 1_11 - 58 MethyltransfD12 PF02086.10 260 2.3e-11 36.2 0.0 1 1 9.8e-13 2.6e-11 36.0 0.0 1 37 15 49 15 55 0.92 # 7465 # 7638 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.374 1_78 - 98 Terminase_GpA PF05876.7 557 5.5e-05 14.2 1.7 1 1 6.9e-07 5.5e-05 14.2 1.7 201 237 4 38 2 74 0.91 # 57616 # 57909 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_15 - 104 tRNA_anti-codon PF01336.20 75 0.00036 13.0 0.0 1 1 6.7e-06 0.00053 12.5 0.0 27 73 46 100 39 102 0.80 # 8479 # 8790 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/de2e8060-b6de-4538-84ca-074d2a1b75f3 # Target file: checkm_output/bins/pGCA_000016505.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000016505.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/de2e8060-b6de-4538-84ca-074d2a1b75f3 checkm_output/bins/pGCA_000016505.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:54 2020 # [ok]