# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_82 - 205 Terminase_6 PF03237.10 384 4.1e-14 44.7 1.0 1 1 1.2e-15 4.8e-14 44.4 1.0 197 382 1 186 1 188 0.79 # 55299 # 55913 # -1 # ID=1_82;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_1 - 225 Terminase_6 PF03237.10 384 2.1e-08 25.9 0.0 1 1 6e-10 2.5e-08 25.7 0.0 3 186 47 224 45 225 0.75 # 2 # 676 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.403 1_27 - 294 IstB_IS21 PF01695.12 178 9.7e-10 30.7 0.1 1 2 8.4e-08 6.9e-06 18.2 0.0 28 69 104 145 73 154 0.85 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 IstB_IS21 PF01695.12 178 9.7e-10 30.7 0.1 2 2 2e-05 0.0016 10.5 0.1 76 152 170 257 164 278 0.60 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_49 - 274 MipZ PF09140.6 261 3.1e-10 32.1 0.1 1 2 4.4e-08 3.6e-06 18.8 0.0 3 54 5 56 3 88 0.80 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_49 - 274 MipZ PF09140.6 261 3.1e-10 32.1 0.1 2 2 1e-05 0.00083 11.1 0.0 79 125 109 155 83 161 0.83 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_49 - 274 YhjQ PF06564.7 244 2.5e-07 22.9 0.0 1 1 2e-08 1.6e-06 20.2 0.0 9 149 10 160 1 167 0.67 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_27 - 294 NB-ARC PF00931.17 287 2.1e-07 22.6 0.9 1 1 4.1e-09 3.4e-07 22.0 0.9 2 161 108 276 107 287 0.67 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 AAA_22 PF13401.1 131 4.6e-05 16.2 0.6 1 2 0.0066 0.54 3.0 0.1 32 89 66 125 53 129 0.71 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 AAA_22 PF13401.1 131 4.6e-05 16.2 0.6 2 2 9.8e-06 0.0008 12.2 0.0 7 97 126 216 122 251 0.72 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 Miro PF08477.8 119 0.00012 15.2 0.0 1 1 4.4e-06 0.00036 13.7 0.0 2 65 126 185 125 212 0.83 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_49 - 274 ArsA_ATPase PF02374.10 305 7.8e-10 30.8 0.1 1 1 2.8e-11 2.3e-09 29.3 0.1 9 136 11 138 3 144 0.63 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_27 - 294 Zeta_toxin PF06414.7 201 5.7e-05 14.9 0.0 1 1 1.8e-06 0.00015 13.5 0.0 17 44 124 150 107 158 0.86 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_49 - 274 VirC1 PF07015.6 231 9.4e-05 14.2 0.1 1 2 1.1e-05 0.00089 11.0 0.0 4 40 5 41 1 63 0.89 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_49 - 274 VirC1 PF07015.6 231 9.4e-05 14.2 0.1 2 2 0.013 1.1 0.8 0.0 82 138 127 181 112 194 0.68 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_49 - 274 Fer4_NifH PF00142.13 273 9.7e-08 24.1 2.6 1 2 3e-08 2.5e-06 19.4 0.1 8 51 11 54 4 77 0.86 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_49 - 274 Fer4_NifH PF00142.13 273 9.7e-08 24.1 2.6 2 2 0.00088 0.072 4.8 0.3 142 247 151 261 121 269 0.75 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_27 - 294 AAA_16 PF13191.1 185 1.2e-05 18.0 0.0 1 1 3.6e-07 2.9e-05 16.7 0.0 11 51 110 150 106 205 0.82 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_64 - 223 AAA_23 PF13476.1 202 0.075 5.9 11.6 1 1 0.012 0.96 2.3 11.7 144 196 138 201 23 221 0.63 # 39425 # 40093 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_27 - 294 AAA_18 PF13238.1 129 0.00017 14.6 0.7 1 2 0.094 3.8 0.5 0.1 48 85 54 97 37 120 0.55 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 AAA_18 PF13238.1 129 0.00017 14.6 0.7 2 2 2.3e-05 0.00093 12.2 0.0 1 85 126 219 126 253 0.59 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_55 - 197 AAA_18 PF13238.1 129 0.0012 11.8 3.8 1 1 5.3e-05 0.0022 11.0 3.8 25 128 83 174 26 175 0.71 # 33410 # 34000 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.428 1_49 - 274 CbiA PF01656.18 195 1.3e-32 105.4 0.4 1 1 2e-34 1.6e-32 105.1 0.4 1 193 5 230 5 232 0.83 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_27 - 294 AAA_14 PF13173.1 128 0.00035 13.1 3.5 1 1 3.2e-06 0.00026 13.5 0.8 3 98 124 253 122 275 0.57 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 AAA PF00004.24 132 1.7e-08 27.4 0.2 1 1 6.4e-10 5.3e-08 25.8 0.0 2 123 127 270 126 277 0.80 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_49 - 274 AAA_31 PF13614.1 157 8.3e-12 37.9 0.1 1 1 1.5e-12 1.3e-10 34.1 0.1 5 149 7 159 4 166 0.62 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_27 - 294 AAA_33 PF13671.1 143 9e-06 18.3 0.0 1 1 2.6e-07 2.1e-05 17.0 0.0 2 47 126 220 126 290 0.54 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 ABC_tran PF00005.22 137 1.7e-05 17.7 2.2 1 3 0.063 5.2 0.0 0.3 57 89 71 115 17 122 0.45 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 ABC_tran PF00005.22 137 1.7e-05 17.7 2.2 2 3 4.8e-07 3.9e-05 16.6 0.1 5 42 117 154 114 262 0.57 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 ABC_tran PF00005.22 137 1.7e-05 17.7 2.2 3 3 0.063 5.2 0.0 0.0 29 60 234 266 229 284 0.77 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 ResIII PF04851.10 184 3e-05 16.5 0.3 1 2 0.097 8 -1.2 0.1 63 79 59 75 50 111 0.41 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_27 - 294 ResIII PF04851.10 184 3e-05 16.5 0.3 2 2 9.5e-07 7.8e-05 15.2 0.0 8 80 107 176 100 240 0.69 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_4 - 275 AAA_11 PF13086.1 236 0.0014 10.8 8.0 1 1 2.2e-05 0.0018 10.5 8.0 75 169 98 195 54 198 0.83 # 2134 # 2958 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_1 - 225 Terminase_3 PF04466.8 387 7.9e-10 30.9 0.0 1 1 2.4e-11 9.7e-10 30.6 0.0 6 185 45 224 42 225 0.86 # 2 # 676 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.403 1_82 - 205 Terminase_3 PF04466.8 387 2.9e-05 15.8 1.8 1 1 6e-06 0.00025 12.8 1.8 322 386 114 186 1 187 0.51 # 55299 # 55913 # -1 # ID=1_82;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_27 - 294 RNA_helicase PF00910.17 107 8.3e-07 21.8 0.1 1 1 9.5e-08 7.8e-06 18.7 0.1 1 71 126 201 126 239 0.75 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_49 - 274 AAA_24 PF13479.1 213 0.00027 13.2 0.1 1 1 8.9e-06 0.00073 11.8 0.0 12 75 12 135 11 250 0.82 # 28627 # 29448 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_27 - 294 NACHT PF05729.7 166 0.00031 13.1 0.0 1 1 5.8e-06 0.00048 12.4 0.0 3 28 126 151 124 240 0.84 # 12696 # 13577 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b4da7930-d033-455b-ad79-4cf3e660840d # Target file: checkm_output/bins/pGCA_000015065.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000015065.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b4da7930-d033-455b-ad79-4cf3e660840d checkm_output/bins/pGCA_000015065.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:52 2020 # [ok]