# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 247 Mg_chelatase PF01078.16 207 0.00026 11.7 0.0 1 1 1.1e-05 0.00043 11.0 0.0 25 56 34 65 23 121 0.84 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 ABC_ATPase PF09818.4 448 7.2e-06 16.3 0.4 1 2 0.0027 0.1 2.6 0.0 242 265 28 52 21 57 0.88 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 ABC_ATPase PF09818.4 448 7.2e-06 16.3 0.4 2 2 9.7e-06 0.00038 10.6 0.1 355 431 161 233 132 243 0.81 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 IstB_IS21 PF01695.12 178 0.00025 12.1 0.0 1 2 2e-05 0.00078 10.4 0.0 43 66 27 50 11 64 0.80 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 IstB_IS21 PF01695.12 178 0.00025 12.1 0.0 2 2 0.098 3.8 -1.6 0.0 108 151 158 203 124 210 0.64 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 2_8 - 308 MipZ PF09140.6 261 1e-10 32.6 0.8 1 1 3.3e-10 1.3e-08 25.8 0.8 1 125 8 155 8 160 0.64 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 2_8 - 308 YhjQ PF06564.7 244 2.1e-10 31.9 0.0 1 1 7.3e-12 2.9e-10 31.5 0.0 3 148 9 159 8 203 0.76 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_14 - 230 Pyr_redox_2 PF07992.9 201 1.3e-13 42.8 0.1 1 2 0.00058 0.023 6.1 0.0 87 124 10 41 2 45 0.63 # 9510 # 10199 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_14 - 230 Pyr_redox_2 PF07992.9 201 1.3e-13 42.8 0.1 2 2 8.9e-13 3.5e-11 34.9 0.0 163 200 44 82 41 83 0.90 # 9510 # 10199 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_9 - 247 AAA_22 PF13401.1 131 1.1e-07 23.6 0.6 1 1 3.6e-08 1.4e-06 20.1 0.6 4 126 31 202 28 207 0.67 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_15 PF13175.1 415 6.7e-08 23.4 0.1 1 2 4.3e-05 0.0017 9.0 0.0 23 76 32 76 8 135 0.63 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_15 PF13175.1 415 6.7e-08 23.4 0.1 2 2 2.9e-06 0.00011 12.8 0.0 372 411 161 200 146 204 0.92 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_17 PF13207.1 121 0.0003 13.2 0.1 1 1 2e-05 0.00077 11.9 0.0 2 17 34 49 33 80 0.91 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_21 PF13304.1 303 3.4e-17 54.8 0.0 1 2 1.4e-07 5.6e-06 18.0 0.0 4 40 36 70 33 85 0.76 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_21 PF13304.1 303 3.4e-17 54.8 0.0 2 2 1.1e-12 4.3e-11 34.8 0.0 220 299 124 201 87 204 0.82 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 MobB PF03205.9 140 0.00022 12.5 0.0 1 1 1.2e-05 0.00048 11.4 0.0 2 20 33 51 32 67 0.87 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 2_8 - 308 ArsA_ATPase PF02374.10 305 4.7e-06 17.3 0.2 1 1 4.7e-07 1.8e-05 15.4 0.2 4 136 11 138 8 148 0.59 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 247 SMC_N PF02463.14 220 4.4e-13 40.5 0.2 1 1 5.5e-14 2.1e-12 38.2 0.2 25 206 32 209 5 218 0.77 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 2_8 - 308 Fer4_NifH PF00142.13 273 7.2e-06 16.9 0.2 1 3 5.1e-06 0.0002 12.1 0.1 8 48 16 57 10 79 0.81 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 2_8 - 308 Fer4_NifH PF00142.13 273 7.2e-06 16.9 0.2 2 3 0.021 0.83 0.3 0.0 237 269 76 107 62 111 0.76 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 2_8 - 308 Fer4_NifH PF00142.13 273 7.2e-06 16.9 0.2 3 3 0.019 0.75 0.4 0.0 166 201 180 217 147 260 0.61 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 247 Arch_ATPase PF01637.13 234 0.00015 13.1 0.4 1 1 1.2e-05 0.00048 11.4 0.4 20 46 31 56 18 210 0.82 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_16 PF13191.1 185 2.5e-07 22.4 0.1 1 1 1.1e-08 4.3e-07 21.7 0.1 8 73 20 81 13 212 0.74 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_23 PF13476.1 202 2.9e-06 19.3 0.2 1 1 3.2e-07 1.2e-05 17.2 0.2 13 40 22 52 6 147 0.90 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_18 PF13238.1 129 0.0002 13.3 0.0 1 1 1.4e-05 0.00053 11.9 0.0 1 20 34 53 34 96 0.73 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 4_2 - 144 adh_short PF00106.20 167 1.8e-05 16.3 0.4 1 1 5.8e-07 2.3e-05 15.9 0.4 11 115 22 128 16 134 0.87 # 343 # 774 # 1 # ID=4_2;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_9 - 247 AAA_13 PF13166.1 712 2.3e-06 17.8 0.2 1 2 2.2e-05 0.00084 9.4 0.0 23 107 38 124 19 138 0.69 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_13 PF13166.1 712 2.3e-06 17.8 0.2 2 2 0.00013 0.0053 6.7 0.1 539 579 170 209 163 236 0.88 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 2_8 - 308 CbiA PF01656.18 195 1.2e-21 68.5 0.0 1 1 4.1e-23 1.6e-21 68.1 0.0 1 193 10 233 10 235 0.73 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 247 AAA_14 PF13173.1 128 6.5e-05 14.4 0.1 1 2 2.2e-05 0.00087 10.8 0.0 2 41 31 70 30 120 0.69 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_14 PF13173.1 128 6.5e-05 14.4 0.1 2 2 0.015 0.59 1.6 0.0 61 95 158 198 126 213 0.68 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_13 - 228 HI0933_like PF03486.9 409 0.00025 11.1 0.0 1 1 1.1e-05 0.00042 10.4 0.0 287 363 125 199 86 211 0.74 # 8777 # 9460 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_9 - 247 AAA_29 PF13555.1 62 5e-08 24.0 0.0 1 1 3.3e-09 1.3e-07 22.7 0.0 13 40 22 48 17 52 0.82 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA PF00004.24 132 0.00011 14.0 0.5 1 1 4.7e-05 0.0018 10.0 0.5 2 38 35 133 34 215 0.52 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 MMR_HSR1 PF01926.18 116 7.7e-05 14.3 0.0 1 1 3.5e-06 0.00014 13.5 0.0 2 37 34 69 33 128 0.75 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 DUF258 PF03193.11 161 1.1e-08 26.0 0.0 1 1 4.5e-10 1.7e-08 25.3 0.0 14 68 9 64 2 91 0.83 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 DLIC PF05783.6 472 0.00019 11.7 0.0 1 1 7.2e-06 0.00028 11.1 0.0 24 55 30 61 19 90 0.91 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 2_8 - 308 AAA_31 PF13614.1 157 1e-08 26.8 0.3 1 1 4.5e-09 1.7e-07 22.8 0.3 2 149 9 159 8 167 0.73 # 3661 # 4584 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_9 - 247 AAA_33 PF13671.1 143 1e-05 17.0 0.0 1 1 4.8e-07 1.9e-05 16.2 0.0 1 19 33 51 33 120 0.78 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 ABC_tran PF00005.22 137 2.6e-39 126.3 0.0 1 1 9.5e-41 3.7e-39 125.7 0.0 1 137 21 169 21 169 0.93 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_19 PF13245.1 76 0.00025 12.4 0.0 1 2 3.8e-05 0.0015 9.9 0.0 11 32 32 52 26 88 0.82 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_19 PF13245.1 76 0.00025 12.4 0.0 2 2 0.076 2.9 -0.6 0.0 27 62 179 211 176 228 0.70 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_10 PF12846.2 304 2.5e-06 18.7 0.1 1 2 1.8e-06 7.1e-05 13.9 0.0 6 30 36 61 32 100 0.86 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_10 PF12846.2 304 2.5e-06 18.7 0.1 2 2 0.0037 0.14 3.0 0.1 220 292 158 236 130 243 0.82 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 SbcCD_C PF13558.1 90 3.4e-05 15.3 0.2 1 1 1.7e-05 0.00065 11.3 0.2 32 89 140 184 126 185 0.75 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_8 - 285 Methyltransf_31 PF13847.1 152 1.6e-05 16.1 0.1 1 1 7.5e-07 2.9e-05 15.3 0.1 41 94 76 133 73 195 0.76 # 4796 # 5650 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.444 1_9 - 247 Adeno_IVa2 PF02456.10 370 2.4e-05 14.6 0.1 1 2 3.1e-06 0.00012 12.3 0.0 65 108 8 52 1 79 0.78 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 Adeno_IVa2 PF02456.10 370 2.4e-05 14.6 0.1 2 2 0.018 0.7 -0.1 0.0 235 255 191 211 182 220 0.82 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 ArgK PF03308.11 267 6.7e-05 13.3 0.0 1 1 2.6e-06 0.0001 12.7 0.0 5 49 5 51 1 63 0.81 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 UPF0079 PF02367.12 123 6.9e-05 14.1 0.1 1 1 4.2e-06 0.00016 12.9 0.0 11 35 27 51 18 63 0.86 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_25 PF13481.1 194 1.1e-05 16.5 0.0 1 2 1.8e-06 6.8e-05 13.9 0.0 23 50 18 48 7 51 0.83 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_25 PF13481.1 194 1.1e-05 16.5 0.0 2 2 0.042 1.6 -0.4 0.0 165 188 175 199 160 201 0.84 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_5 PF07728.9 139 0.00016 13.0 0.2 1 2 4.7e-05 0.0018 9.6 0.1 2 19 34 51 33 68 0.86 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 1_9 - 247 AAA_5 PF07728.9 139 0.00016 13.0 0.2 2 2 0.018 0.71 1.2 0.0 59 107 151 205 137 228 0.66 # 5671 # 6411 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.463 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4ae7955a-d5f6-42f0-8d47-d8a580a598a1 # Target file: checkm_output/bins/pGCA_000014525.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000014525.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4ae7955a-d5f6-42f0-8d47-d8a580a598a1 checkm_output/bins/pGCA_000014525.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:51 2020 # [ok]