# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 335 IstB_IS21 PF01695.12 178 0.0002 13.0 0.0 1 1 6.6e-06 0.0004 12.0 0.0 49 84 14 49 6 57 0.90 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 262 MipZ PF09140.6 261 1.4e-08 26.3 0.0 1 1 5.2e-08 1.5e-06 19.6 0.0 3 125 5 149 3 155 0.56 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 MipZ PF09140.6 261 2.3e-06 19.0 0.0 1 2 2.8e-06 8.5e-05 13.9 0.0 8 39 19 50 13 71 0.82 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_2 - 335 MipZ PF09140.6 261 2.3e-06 19.0 0.0 2 2 0.0076 0.23 2.6 0.0 75 113 114 154 91 164 0.67 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 262 YhjQ PF06564.7 244 3e-11 35.2 0.0 1 1 1.5e-12 4.6e-11 34.7 0.0 5 153 6 158 2 164 0.77 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 YhjQ PF06564.7 244 2e-05 16.2 0.0 1 1 1.7e-06 5.2e-05 14.8 0.0 10 55 20 65 14 176 0.64 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 3_11 - 459 3HCDH_N PF02737.13 180 2.1e-07 22.9 0.4 1 2 7.2e-08 2.2e-06 19.6 0.1 1 51 154 205 154 247 0.67 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 3HCDH_N PF02737.13 180 2.1e-07 22.9 0.4 2 2 0.039 1.2 0.9 0.0 122 147 301 326 295 335 0.66 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 3HCDH_N PF02737.13 180 0.00039 12.3 0.0 1 1 2e-05 0.00061 11.6 0.0 1 47 149 196 149 228 0.78 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 GIDA PF01134.17 392 1.1e-06 19.9 0.1 1 2 0.025 0.76 0.6 0.0 1 40 5 45 5 64 0.79 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 GIDA PF01134.17 392 1.1e-06 19.9 0.1 2 2 3.8e-07 1.1e-05 16.5 0.1 2 29 155 185 154 215 0.84 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 GIDA PF01134.17 392 3.3e-05 15.0 0.1 1 2 0.0043 0.13 3.2 0.0 92 150 59 115 17 127 0.79 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 GIDA PF01134.17 392 3.3e-05 15.0 0.1 2 2 6.1e-05 0.0018 9.3 0.0 2 30 150 178 149 208 0.83 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 Pyr_redox_2 PF07992.9 201 8.6e-35 112.6 0.0 1 1 7.2e-36 2.2e-34 111.3 0.0 1 197 5 286 5 290 0.94 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 Pyr_redox_2 PF07992.9 201 3.1e-30 97.7 0.0 1 1 1.5e-30 4.4e-29 93.9 0.0 1 200 11 285 11 286 0.91 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 335 NB-ARC PF00931.17 287 0.00065 10.7 0.0 1 1 1.8e-05 0.0011 10.0 0.0 21 38 14 31 6 42 0.85 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 262 AAA_22 PF13401.1 131 0.00043 12.6 0.0 1 1 1.2e-05 0.00072 11.9 0.0 14 83 13 84 6 129 0.87 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_9 - 262 ATP_bind_1 PF03029.12 238 4.9e-05 15.1 0.1 1 2 4.1e-05 0.0024 9.5 0.0 6 35 13 42 7 50 0.91 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_9 - 262 ATP_bind_1 PF03029.12 238 4.9e-05 15.1 0.1 2 2 0.0028 0.17 3.5 0.0 83 143 116 167 99 185 0.73 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 SRP54 PF00448.17 196 7.8e-07 20.9 0.4 1 2 4.5e-07 1.3e-05 16.8 0.3 3 38 14 49 12 52 0.93 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_2 - 335 SRP54 PF00448.17 196 7.8e-07 20.9 0.4 2 2 0.027 0.81 1.2 0.0 76 92 132 148 108 156 0.83 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 262 SRP54 PF00448.17 196 0.00022 12.9 0.1 1 1 2.2e-05 0.00065 11.3 0.0 11 38 13 40 6 48 0.92 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 3_6 - 402 NAD_binding_7 PF13241.1 103 4.6e-11 35.2 0.0 1 2 3.3e-05 0.00098 11.6 0.0 7 71 9 92 5 113 0.68 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 NAD_binding_7 PF13241.1 103 4.6e-11 35.2 0.0 2 2 3.3e-08 9.9e-07 21.2 0.0 7 41 147 186 144 239 0.72 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 NAD_binding_7 PF13241.1 103 0.00012 14.5 0.0 1 1 1.2e-05 0.00037 13.0 0.0 5 39 150 184 147 252 0.79 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 2_11 - 390 Prok_Ub PF14454.1 65 0.0005 11.9 0.1 1 2 0.0024 0.14 4.1 0.0 7 35 21 49 18 50 0.87 # 6635 # 7804 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_11 - 390 Prok_Ub PF14454.1 65 0.0005 11.9 0.1 2 2 0.0012 0.075 5.0 0.1 18 39 70 92 65 103 0.84 # 6635 # 7804 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_2 - 335 ArsA_ATPase PF02374.10 305 7.2e-75 243.9 0.0 1 1 6.4e-76 1.9e-74 242.5 0.0 2 300 13 293 12 297 0.96 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 262 ArsA_ATPase PF02374.10 305 1.8e-11 35.8 0.0 1 1 1.1e-12 3.3e-11 34.9 0.0 9 137 11 133 2 137 0.83 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 PhoH PF02562.11 205 0.00027 12.3 0.0 1 1 1e-05 0.00062 11.2 0.0 20 59 13 52 2 71 0.84 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 3_6 - 402 Shikimate_DH PF01488.15 135 0.00018 13.8 0.1 1 2 0.0089 0.53 2.6 0.0 9 41 6 39 2 45 0.79 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 Shikimate_DH PF01488.15 135 0.00018 13.8 0.1 2 2 0.00018 0.011 8.0 0.0 12 38 147 173 137 177 0.79 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 NAD_binding_8 PF13450.1 68 4.3e-06 18.9 0.1 1 2 0.0086 0.52 2.7 0.0 1 31 8 40 8 45 0.85 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 NAD_binding_8 PF13450.1 68 4.3e-06 18.9 0.1 2 2 4.2e-06 0.00025 13.3 0.0 1 38 157 194 157 216 0.87 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_11 - 153 GMC_oxred_N PF00732.14 296 0.00039 11.8 0.3 1 1 7.1e-06 0.00043 11.6 0.3 74 145 12 86 6 126 0.74 # 7388 # 7846 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.329 3_6 - 402 F420_oxidored PF03807.12 96 0.00086 12.0 1.1 1 2 0.029 1.8 1.3 0.4 3 35 13 43 11 100 0.85 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 F420_oxidored PF03807.12 96 0.00086 12.0 1.1 2 2 0.00017 0.01 8.5 0.0 1 30 149 175 149 194 0.88 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 262 VirC1 PF07015.6 231 8e-06 17.2 0.1 1 2 1.1e-05 0.00067 10.9 0.0 4 38 5 39 2 50 0.78 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_9 - 262 VirC1 PF07015.6 231 8e-06 17.2 0.1 2 2 0.0013 0.077 4.2 0.0 69 111 108 151 96 172 0.73 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 Fer4_NifH PF00142.13 273 5e-08 24.6 0.0 1 1 3.1e-09 9.3e-08 23.7 0.0 5 41 17 53 13 70 0.86 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 262 Fer4_NifH PF00142.13 273 1.6e-05 16.3 0.0 1 1 9.3e-07 2.8e-05 15.6 0.0 8 48 11 51 5 80 0.83 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_9 - 262 CbiA PF01656.18 195 4.7e-35 112.9 0.0 1 1 1.9e-36 5.8e-35 112.6 0.0 1 179 5 209 5 225 0.80 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 CbiA PF01656.18 195 3.3e-16 51.4 0.2 1 1 1.7e-17 5.2e-16 50.8 0.2 4 167 17 250 14 279 0.75 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 3_6 - 402 HI0933_like PF03486.9 409 2.2e-08 25.1 0.1 1 3 3.5e-05 0.0011 9.7 0.0 122 165 76 116 70 127 0.84 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 HI0933_like PF03486.9 409 2.2e-08 25.1 0.1 2 3 0.00053 0.016 5.8 0.0 2 36 149 183 148 190 0.89 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 HI0933_like PF03486.9 409 2.2e-08 25.1 0.1 3 3 0.00046 0.014 6.0 0.0 115 163 195 242 187 248 0.85 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 HI0933_like PF03486.9 409 2.5e-07 21.6 0.7 1 3 0.004 0.12 2.9 0.0 117 163 67 115 14 119 0.78 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 HI0933_like PF03486.9 409 2.5e-07 21.6 0.7 2 3 1.5e-05 0.00044 10.9 0.1 2 35 154 187 153 192 0.91 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 HI0933_like PF03486.9 409 2.5e-07 21.6 0.7 3 3 0.0013 0.039 4.5 0.0 110 164 195 247 193 251 0.87 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 FAD_binding_2 PF00890.19 417 0.00033 11.7 0.0 1 4 0.015 0.92 0.4 0.0 152 204 70 119 65 149 0.77 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 FAD_binding_2 PF00890.19 417 0.00033 11.7 0.0 2 4 0.00068 0.041 4.8 0.1 3 29 156 182 154 187 0.91 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 FAD_binding_2 PF00890.19 417 0.00033 11.7 0.0 3 4 0.013 0.79 0.6 0.0 376 402 266 286 257 295 0.89 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 FAD_binding_2 PF00890.19 417 0.00033 11.7 0.0 4 4 0.043 2.6 -1.1 0.0 218 247 400 427 388 436 0.78 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_2 - 335 AAA PF00004.24 132 0.0021 10.5 2.3 1 1 5.6e-05 0.0034 9.8 0.7 2 23 16 40 15 73 0.72 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 3_6 - 402 Pyr_redox_3 PF13738.1 203 1.9e-14 46.3 0.1 1 2 1.1e-13 3.2e-12 39.1 0.0 95 200 76 180 59 183 0.84 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 Pyr_redox_3 PF13738.1 203 1.9e-14 46.3 0.1 2 2 0.0053 0.16 4.2 0.0 84 142 191 247 184 295 0.78 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 Pyr_redox_3 PF13738.1 203 1.2e-13 43.8 0.1 1 3 0.011 0.33 3.1 0.0 167 195 3 33 1 38 0.78 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 Pyr_redox_3 PF13738.1 203 1.2e-13 43.8 0.1 2 3 3.2e-12 9.5e-11 34.3 0.0 94 197 71 182 61 188 0.85 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 Pyr_redox_3 PF13738.1 203 1.2e-13 43.8 0.1 3 3 0.017 0.52 2.5 0.0 85 158 197 270 189 288 0.75 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_19 - 237 N6_Mtase PF02384.11 311 3.4e-07 21.7 0.0 1 1 8.1e-09 4.8e-07 21.2 0.0 20 98 11 107 4 141 0.77 # 12325 # 13035 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.380 1_20 - 1481 DUF938 PF06080.7 204 0.00028 12.6 0.0 1 1 1.5e-05 0.00088 11.0 0.0 20 57 1025 1061 1014 1073 0.87 # 13035 # 17477 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 2_7 - 578 TraG-D_C PF12696.2 128 4.1e-31 99.7 0.1 1 1 2e-32 1.2e-30 98.2 0.0 2 127 418 544 417 545 0.90 # 3319 # 5052 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_9 - 262 AAA_31 PF13614.1 157 4.4e-16 51.4 0.1 1 1 2.2e-17 6.5e-16 50.8 0.1 8 153 10 157 3 161 0.80 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 AAA_31 PF13614.1 157 4.2e-08 25.5 0.0 1 2 3.4e-07 1e-05 17.7 0.0 5 45 16 56 13 68 0.87 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_2 - 335 AAA_31 PF13614.1 157 4.2e-08 25.5 0.0 2 2 0.0027 0.081 5.0 0.0 105 130 125 152 114 164 0.76 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_2 - 335 NTPase_1 PF03266.10 168 0.0006 11.7 0.2 1 1 2.9e-05 0.0017 10.2 0.1 2 30 15 43 14 50 0.86 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_19 - 237 Methyltransf_26 PF13659.1 117 9.7e-05 14.6 0.0 1 1 8.6e-06 0.00026 13.2 0.0 3 40 45 103 43 183 0.73 # 12325 # 13035 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.380 1_20 - 1481 Methyltransf_26 PF13659.1 117 0.00025 13.3 0.0 1 1 1.9e-05 0.00056 12.2 0.0 60 103 1130 1174 1031 1187 0.81 # 13035 # 17477 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 3_6 - 402 NAD_Gly3P_dh_N PF01210.18 157 1.3e-05 17.1 0.0 1 1 4.3e-07 2.6e-05 16.2 0.0 2 33 150 181 149 208 0.84 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 2-Hacid_dh_C PF02826.14 178 0.00034 12.0 0.0 1 1 1.5e-05 0.00089 10.6 0.0 17 70 133 186 128 204 0.86 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 ApbA PF02558.11 151 8.9e-05 14.2 0.1 1 1 5.7e-06 0.00034 12.2 0.0 1 78 150 229 150 238 0.65 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 CoA_binding PF02629.14 96 0.00029 13.6 1.1 1 1 6.1e-05 0.0037 10.0 0.0 2 26 2 26 1 38 0.81 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 Lycopene_cycl PF05834.7 374 3.9e-05 14.8 0.0 1 4 0.058 3.5 -1.5 0.0 3 38 13 48 12 61 0.80 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 Lycopene_cycl PF05834.7 374 3.9e-05 14.8 0.0 2 4 0.099 6 -2.2 0.0 106 143 83 118 75 129 0.82 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 Lycopene_cycl PF05834.7 374 3.9e-05 14.8 0.0 3 4 7.9e-05 0.0048 7.9 0.0 2 30 150 176 149 186 0.79 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 Lycopene_cycl PF05834.7 374 3.9e-05 14.8 0.0 4 4 0.0028 0.17 2.9 0.0 94 149 196 254 188 269 0.73 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 K_oxygenase PF13434.1 341 4e-07 21.3 0.0 1 2 0.066 2 -0.7 0.0 189 221 2 34 1 43 0.86 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 K_oxygenase PF13434.1 341 4e-07 21.3 0.0 2 2 5.9e-08 1.8e-06 19.2 0.0 107 223 71 186 66 213 0.81 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 K_oxygenase PF13434.1 341 9.2e-07 20.2 0.1 1 3 0.083 2.5 -1.0 0.0 188 224 7 43 2 72 0.80 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 K_oxygenase PF13434.1 341 9.2e-07 20.2 0.1 2 3 2.8e-07 8.5e-06 17.0 0.0 112 222 80 177 53 185 0.74 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 K_oxygenase PF13434.1 341 9.2e-07 20.2 0.1 3 3 0.071 2.1 -0.8 0.0 141 161 227 247 192 256 0.73 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 1481 Eco57I PF07669.6 106 1.5e-32 104.4 0.2 1 2 0.078 4.7 -0.1 0.0 28 95 909 978 895 983 0.79 # 13035 # 17477 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_20 - 1481 Eco57I PF07669.6 106 1.5e-32 104.4 0.2 2 2 2.7e-33 1.6e-31 101.0 0.0 1 105 1139 1238 1139 1239 0.96 # 13035 # 17477 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 3_11 - 459 UDPG_MGDP_dh_N PF03721.9 185 9.6e-06 17.2 0.3 1 1 8.9e-07 2.7e-05 15.8 0.0 2 31 154 183 153 240 0.89 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 UDPG_MGDP_dh_N PF03721.9 185 0.0001 13.9 0.0 1 1 6e-06 0.00018 13.1 0.0 2 29 149 176 148 181 0.93 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 335 AAA_19 PF13245.1 76 1.6e-05 16.8 0.1 1 1 1.6e-06 9.8e-05 14.3 0.1 12 50 15 48 8 58 0.87 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 2_7 - 578 AAA_10 PF12846.2 304 2.6e-08 25.8 0.0 1 1 1.4e-09 4.2e-08 25.1 0.0 2 286 185 481 184 492 0.66 # 3319 # 5052 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_2 - 335 AAA_10 PF12846.2 304 0.0001 13.9 0.1 1 1 7.1e-06 0.00021 12.9 0.1 3 51 14 67 12 114 0.80 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 3_11 - 459 DAO PF01266.19 358 3e-12 38.2 0.0 1 3 5.4e-05 0.0016 9.5 0.0 158 206 70 121 66 137 0.82 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 DAO PF01266.19 358 3e-12 38.2 0.0 2 3 3.7e-06 0.00011 13.3 0.1 2 30 155 183 154 190 0.92 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 DAO PF01266.19 358 3e-12 38.2 0.0 3 3 1.2e-05 0.00037 11.6 0.0 149 203 196 249 192 308 0.86 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 DAO PF01266.19 358 1.7e-11 35.7 3.8 1 3 2.9e-05 0.00087 10.4 0.0 161 212 77 126 60 144 0.81 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 DAO PF01266.19 358 1.7e-11 35.7 3.8 2 3 1.6e-05 0.00048 11.2 0.0 2 28 150 176 149 186 0.88 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 DAO PF01266.19 358 1.7e-11 35.7 3.8 3 3 3.8e-06 0.00011 13.3 0.0 154 202 196 244 188 283 0.91 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 1481 ResIII PF04851.10 184 6.7e-19 60.6 0.6 1 1 4.3e-20 2.6e-18 58.7 0.0 2 183 301 470 300 471 0.90 # 13035 # 17477 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 3_6 - 402 NAD_binding_9 PF13454.1 156 2.4e-07 22.8 1.9 1 4 0.036 2.1 0.3 0.0 1 33 13 42 13 59 0.78 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 NAD_binding_9 PF13454.1 156 2.4e-07 22.8 1.9 2 4 0.00015 0.0091 8.0 0.0 117 155 80 115 62 116 0.77 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 NAD_binding_9 PF13454.1 156 2.4e-07 22.8 1.9 3 4 0.00089 0.053 5.5 0.0 1 38 151 184 151 195 0.76 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 NAD_binding_9 PF13454.1 156 2.4e-07 22.8 1.9 4 4 0.00061 0.036 6.0 0.0 101 154 189 242 177 244 0.75 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_11 - 459 Pyr_redox PF00070.22 80 1.5e-21 68.9 3.8 1 2 0.0027 0.082 5.6 0.2 49 78 68 95 58 100 0.85 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_11 - 459 Pyr_redox PF00070.22 80 1.5e-21 68.9 3.8 2 2 3.3e-21 1e-19 63.0 0.5 2 78 155 232 154 235 0.95 # 7607 # 8983 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 3_6 - 402 Pyr_redox PF00070.22 80 2.9e-16 51.9 7.5 1 2 0.0048 0.14 4.8 0.0 51 77 72 98 52 102 0.69 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 Pyr_redox PF00070.22 80 2.9e-16 51.9 7.5 2 2 1.7e-16 5.1e-15 47.9 0.0 1 72 149 221 149 229 0.93 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_7 - 578 TrwB_AAD_bind PF10412.4 386 1.6e-30 98.1 0.0 1 1 3.4e-32 2e-30 97.7 0.0 16 368 185 546 174 560 0.83 # 3319 # 5052 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_9 - 262 ParA PF10609.4 81 0.00042 12.4 0.0 1 1 9e-05 0.0027 9.8 0.0 2 49 124 169 123 187 0.79 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 ParA PF10609.4 81 0.00055 12.0 1.2 1 1 8.2e-05 0.0025 10.0 0.0 13 63 184 240 181 257 0.69 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 2_7 - 578 T4SS-DNA_transf PF02534.9 469 6.7e-52 168.7 0.0 1 1 1.5e-53 9.1e-52 168.2 0.0 5 455 142 572 138 576 0.87 # 3319 # 5052 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_2 - 335 ArgK PF03308.11 267 4.5e-07 21.0 0.0 1 1 1.3e-08 7.7e-07 20.3 0.0 29 71 12 54 3 56 0.91 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 2_13 - 233 tRNA-synt_His PF13393.1 311 0.038 5.2 11.4 1 2 0.01 0.6 1.2 1.5 157 227 42 111 34 121 0.85 # 9847 # 10545 # 1 # ID=2_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 2_13 - 233 tRNA-synt_His PF13393.1 311 0.038 5.2 11.4 2 2 3.5e-05 0.0021 9.3 2.8 154 215 118 178 116 203 0.72 # 9847 # 10545 # 1 # ID=2_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 3_6 - 402 TrkA_N PF02254.13 116 1.9e-05 16.9 0.7 1 2 0.006 0.36 3.1 0.1 1 31 12 44 12 52 0.84 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 TrkA_N PF02254.13 116 1.9e-05 16.9 0.7 2 2 1.6e-05 0.00095 11.4 0.0 1 27 150 176 150 182 0.89 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 AlaDh_PNT_C PF01262.16 168 0.00081 11.2 2.9 1 3 0.0092 0.55 1.9 0.0 21 37 10 26 4 44 0.83 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 AlaDh_PNT_C PF01262.16 168 0.00081 11.2 2.9 2 3 0.00025 0.015 7.0 0.1 21 51 148 175 143 218 0.68 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_6 - 402 AlaDh_PNT_C PF01262.16 168 0.00081 11.2 2.9 3 3 0.028 1.7 0.4 0.1 5 30 218 243 214 244 0.88 # 3253 # 4458 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_9 - 262 AAA_24 PF13479.1 213 0.00038 12.2 0.0 1 1 1.1e-05 0.00068 11.4 0.0 12 50 12 56 11 135 0.67 # 5344 # 6129 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_2 - 335 AAA_25 PF13481.1 194 7.6e-05 14.3 0.1 1 1 2.8e-06 0.00017 13.2 0.1 36 63 15 43 9 73 0.81 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_20 - 1481 SNF2_N PF00176.18 299 1.1e-08 26.4 0.0 1 1 4.8e-10 2.9e-08 25.0 0.0 15 173 313 470 240 478 0.78 # 13035 # 17477 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_2 - 335 APS_kinase PF01583.15 157 0.00017 13.4 0.1 1 1 9.2e-06 0.00055 11.8 0.0 4 39 14 49 12 66 0.90 # 174 # 1178 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4faf5a57-f7bc-45fb-a474-afa00a8f681a # Target file: checkm_output/bins/pGCA_000014465.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000014465.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4faf5a57-f7bc-45fb-a474-afa00a8f681a checkm_output/bins/pGCA_000014465.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:51 2020 # [ok]