# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_20 - 333 UPF0054 PF02130.12 145 0.00016 15.5 0.3 1 1 9.5e-07 0.00029 14.6 0.3 102 129 273 300 267 302 0.84 # 22169 # 23167 # -1 # ID=4_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323 1_68 - 255 Mg_chelatase PF01078.16 207 0.0031 11.2 0.0 1 1 2.1e-05 0.0063 10.1 0.0 20 41 97 118 83 129 0.79 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_85 - 374 UPF0020 PF01170.13 180 6.9e-06 20.2 0.0 1 1 7.2e-08 2.2e-05 18.6 0.0 32 156 46 160 31 178 0.76 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_58 - 570 Thymidylate_kin PF02223.12 186 0.00041 14.2 0.0 1 1 3.3e-06 0.001 12.9 0.0 1 29 379 407 379 425 0.87 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_64 - 289 ABC_ATPase PF09818.4 448 0.022 7.7 4.3 1 2 0.023 6.9 -0.5 0.4 246 264 31 49 21 52 0.88 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_64 - 289 ABC_ATPase PF09818.4 448 0.022 7.7 4.3 2 2 2.6e-05 0.0079 9.2 0.3 329 395 136 204 126 222 0.83 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 2_36 - 426 Terminase_6 PF03237.10 384 7.5e-18 58.8 1.7 1 1 5.5e-20 1.7e-17 57.7 1.7 2 306 31 333 30 410 0.77 # 16685 # 17962 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 1_68 - 255 IstB_IS21 PF01695.12 178 8.9e-65 211.9 0.0 1 1 3.9e-67 1.2e-64 211.5 0.0 3 177 55 229 53 230 0.99 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_20 - 127 KH_5 PF13184.1 69 2.2e-05 18.7 0.5 1 1 1.2e-07 3.8e-05 18.0 0.5 19 67 61 109 55 111 0.89 # 17296 # 17676 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 6_6 - 93 Ten1 PF12658.2 124 0.0027 12.0 0.0 1 1 9.3e-06 0.0028 11.9 0.0 51 96 13 55 2 84 0.79 # 5274 # 5552 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_68 - 255 AAA_22 PF13401.1 131 0.00013 16.6 0.0 1 1 8.4e-05 0.0085 10.7 0.0 8 27 103 122 96 192 0.81 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_64 - 289 AAA_22 PF13401.1 131 0.0012 13.5 1.7 1 1 5.9e-05 0.006 11.2 0.8 9 115 34 179 27 196 0.72 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 AAA_22 PF13401.1 131 0.0047 11.6 3.2 1 1 0.0022 0.22 6.1 3.2 7 118 377 536 371 547 0.49 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_64 - 289 SRP54 PF00448.17 196 0.00096 13.1 0.6 1 1 8.9e-06 0.0027 11.6 0.4 6 36 34 64 30 70 0.76 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 3_9 - 601 TylF PF05711.6 249 0.0025 11.4 0.0 1 1 1.6e-05 0.005 10.4 0.0 177 248 84 159 71 160 0.87 # 5693 # 7495 # -1 # ID=3_9;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.353 1_64 - 289 AAA_15 PF13175.1 415 1e-11 39.0 6.4 1 2 2.2e-07 6.8e-05 16.5 6.7 11 79 18 97 8 132 0.65 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_64 - 289 AAA_15 PF13175.1 415 1e-11 39.0 6.4 2 2 7.5e-09 2.3e-06 21.3 0.1 316 412 105 190 92 191 0.74 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 AAA_17 PF13207.1 121 0.00026 16.3 0.4 1 1 5.9e-06 0.0006 15.1 0.4 2 35 377 420 376 521 0.67 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_68 - 255 AAA_17 PF13207.1 121 0.001 14.4 0.1 1 1 6.2e-05 0.0063 11.8 0.0 5 46 105 150 102 205 0.66 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_64 - 289 AAA_17 PF13207.1 121 0.007 11.7 1.8 1 1 0.00016 0.017 10.5 0.8 4 32 34 59 31 126 0.72 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_64 - 289 AAA_21 PF13304.1 303 1.7e-17 58.7 6.9 1 2 6.5e-08 9.9e-06 20.1 3.1 1 37 31 71 31 92 0.62 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_64 - 289 AAA_21 PF13304.1 303 1.7e-17 58.7 6.9 2 2 3.8e-14 5.8e-12 40.6 0.8 165 297 93 188 54 194 0.66 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 AAA_21 PF13304.1 303 1.5e-07 26.1 8.1 1 2 0.038 5.8 1.2 5.5 89 220 120 253 72 284 0.78 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_58 - 570 AAA_21 PF13304.1 303 1.5e-07 26.1 8.1 2 2 9.9e-10 1.5e-07 26.1 8.1 6 297 381 541 381 544 0.75 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_64 - 289 MobB PF03205.9 140 8.4e-05 16.8 1.5 1 1 1.2e-06 0.00035 14.8 1.5 1 29 30 58 30 102 0.77 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 6_10 - 372 ADH_zinc_N PF00107.21 130 2.2e-25 83.2 0.1 1 1 1.2e-27 3.6e-25 82.5 0.1 1 127 197 329 197 332 0.88 # 8880 # 9995 # 1 # ID=6_10;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_27 - 191 Arf PF00025.16 175 0.00085 13.1 0.0 1 1 4.4e-06 0.0013 12.4 0.0 92 145 62 115 52 134 0.85 # 24804 # 25376 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_68 - 255 PhoH PF02562.11 205 7.2e-06 19.8 0.0 1 1 4.5e-08 1.4e-05 18.9 0.0 12 53 92 133 81 186 0.75 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_64 - 289 T2SE PF00437.15 272 0.0011 12.3 1.0 1 1 5.2e-06 0.0016 11.8 0.3 134 159 35 60 17 81 0.89 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 G-alpha PF00503.15 389 0.0001 15.5 0.4 1 1 5.4e-07 0.00016 14.9 0.4 57 121 373 450 355 550 0.76 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 3_20 - 493 AAA_26 PF13500.1 199 0.00095 13.3 0.0 1 1 9.8e-06 0.003 11.6 0.0 1 34 219 252 219 336 0.86 # 22420 # 23898 # 1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.343 6_10 - 372 F420_oxidored PF03807.12 96 0.00051 15.0 0.0 1 1 4.2e-06 0.0013 13.7 0.0 3 47 191 231 189 250 0.84 # 8880 # 9995 # 1 # ID=6_10;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_64 - 289 SMC_N PF02463.14 220 2.7e-06 21.2 1.3 1 1 6.4e-08 9.8e-06 19.4 1.0 23 184 28 173 5 206 0.75 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 SMC_N PF02463.14 220 0.00014 15.6 3.6 1 1 4.7e-05 0.0071 10.0 3.6 28 213 378 557 363 563 0.67 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_68 - 255 AAA_16 PF13191.1 185 0.00087 13.8 0.0 1 1 1.7e-05 0.0026 12.2 0.0 24 51 99 126 85 181 0.71 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_64 - 289 AAA_16 PF13191.1 185 0.0016 12.9 0.0 1 1 1.5e-05 0.0023 12.4 0.0 29 66 34 73 18 156 0.89 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_64 - 289 AAA_23 PF13476.1 202 1.9e-06 22.8 6.5 1 1 1.8e-08 2.8e-06 22.2 6.5 9 68 18 97 5 261 0.59 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 2_68 - 177 AAA_23 PF13476.1 202 0.0082 10.9 3.9 1 1 5.4e-05 0.0082 10.9 3.9 97 176 85 163 4 171 0.67 # 47700 # 48230 # -1 # ID=2_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_64 - 289 AAA_18 PF13238.1 129 0.0024 12.7 2.3 1 1 4.7e-05 0.0048 11.7 1.1 3 50 34 75 33 175 0.73 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 AAA_18 PF13238.1 129 0.0024 12.7 3.2 1 2 0.027 2.8 2.8 0.1 36 86 323 372 296 378 0.77 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_58 - 570 AAA_18 PF13238.1 129 0.0024 12.7 3.2 2 2 0.0002 0.02 9.7 0.4 3 42 379 422 377 521 0.61 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_68 - 255 AAA_18 PF13238.1 129 0.003 12.4 0.6 1 1 0.00025 0.025 9.4 0.1 2 19 103 120 103 201 0.74 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_85 - 374 Methyltransf_25 PF13649.1 101 1e-05 20.4 0.0 1 1 8.7e-08 2.7e-05 19.0 0.0 3 73 48 113 46 159 0.82 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_68 - 255 KaiC PF06745.8 227 7.6e-06 19.6 0.0 1 2 0.066 20 -1.4 0.0 64 109 7 62 3 91 0.67 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 KaiC PF06745.8 227 7.6e-06 19.6 0.0 2 2 7.4e-08 2.3e-05 18.1 0.0 16 61 96 140 68 149 0.82 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 AAA_14 PF13173.1 128 4.8e-06 21.0 0.0 1 1 6.7e-08 1e-05 19.9 0.0 3 100 100 203 98 210 0.68 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_58 - 570 AAA_14 PF13173.1 128 0.00081 13.8 1.1 1 1 3.2e-05 0.005 11.3 0.2 4 48 376 421 373 466 0.65 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_64 - 289 AAA_29 PF13555.1 62 1.6e-06 22.1 0.6 1 1 2.3e-08 3.5e-06 21.0 0.6 12 55 17 62 13 65 0.77 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_58 - 570 AAA_29 PF13555.1 62 4.3e-05 17.5 0.1 1 1 6.5e-07 9.9e-05 16.3 0.1 12 41 364 392 362 410 0.78 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_68 - 255 AAA PF00004.24 132 1.3e-07 26.4 0.0 1 1 2.3e-09 3.6e-07 25.0 0.0 2 68 103 170 102 201 0.82 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_64 - 289 AAA PF00004.24 132 0.002 12.8 2.2 1 1 7.1e-05 0.011 10.5 2.2 3 38 34 115 32 212 0.56 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_68 - 255 Bac_DnaA PF00308.13 219 1.1e-09 32.8 0.0 1 1 5.3e-12 1.6e-09 32.2 0.0 39 139 104 201 74 209 0.91 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 3_14 - 436 PGK PF00162.14 384 0.00023 14.3 0.1 1 1 1.4e-06 0.00044 13.3 0.1 98 156 170 225 154 237 0.80 # 14270 # 15577 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.341 4_22 - 591 PAPS_reduct PF01507.14 174 7.8e-08 26.8 0.0 1 1 1.1e-09 3.3e-07 24.7 0.0 3 153 23 220 21 225 0.74 # 23562 # 25334 # -1 # ID=4_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.377 1_85 - 374 N6_Mtase PF02384.11 311 2e-06 21.6 0.6 1 1 7e-08 2.1e-05 18.1 0.6 26 167 20 137 14 265 0.75 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 3_9 - 601 TraG-D_C PF12696.2 128 6.5e-11 36.7 3.3 1 1 2.6e-13 7.9e-11 36.4 0.0 18 125 4 110 1 112 0.83 # 5693 # 7495 # -1 # ID=3_9;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.353 3_20 - 493 AAA_31 PF13614.1 157 3.6e-06 21.5 0.1 1 1 2.5e-08 7.5e-06 20.4 0.1 1 152 219 374 219 379 0.79 # 22420 # 23898 # 1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_68 - 255 NTPase_1 PF03266.10 168 8.8e-06 20.0 0.0 1 2 0.0009 0.28 5.4 0.0 3 20 103 120 101 131 0.70 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 NTPase_1 PF03266.10 168 8.8e-06 20.0 0.0 2 2 6.2e-06 0.0019 12.4 0.0 85 130 150 198 135 207 0.83 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 AAA_33 PF13671.1 143 0.0003 15.2 0.0 1 1 4e-06 0.00061 14.2 0.0 3 46 103 152 102 201 0.68 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_58 - 570 AAA_33 PF13671.1 143 0.0031 11.9 0.3 1 1 0.00017 0.025 8.9 0.1 6 20 381 398 377 543 0.66 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_85 - 374 Methyltransf_26 PF13659.1 117 4e-15 50.4 0.0 1 1 3.1e-17 9.6e-15 49.2 0.0 4 116 46 154 44 155 0.88 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 6_10 - 372 2-Hacid_dh_C PF02826.14 178 0.0013 12.4 0.1 1 1 7.1e-06 0.0022 11.7 0.1 35 80 186 232 176 241 0.78 # 8880 # 9995 # 1 # ID=6_10;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_68 - 255 AAA_30 PF13604.1 196 0.0003 14.9 0.0 1 2 0.096 15 -0.4 0.0 69 118 18 64 9 71 0.68 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 AAA_30 PF13604.1 196 0.0003 14.9 0.0 2 2 1.8e-05 0.0028 11.7 0.0 21 105 102 172 89 196 0.78 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_58 - 570 AAA_30 PF13604.1 196 0.0041 11.2 0.0 1 1 8.6e-05 0.013 9.5 0.0 21 106 377 515 368 531 0.75 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_85 - 374 MTS PF05175.9 170 1e-09 32.5 0.0 1 1 5.5e-12 1.7e-09 31.8 0.0 23 141 32 154 17 178 0.77 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_58 - 570 ABC_tran PF00005.22 137 2.1e-30 100.3 0.2 1 1 2.6e-32 3.9e-30 99.4 0.2 2 137 365 513 364 513 0.87 # 62722 # 64431 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 1_64 - 289 ABC_tran PF00005.22 137 6.7e-27 89.0 0.0 1 1 7.2e-29 1.1e-26 88.2 0.0 1 137 19 158 19 158 0.94 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_55 - 215 DNA_mis_repair PF01119.14 119 0.00071 13.5 0.0 1 2 3.3e-05 0.01 9.8 0.0 83 101 75 93 50 105 0.79 # 61095 # 61739 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.380 1_55 - 215 DNA_mis_repair PF01119.14 119 0.00071 13.5 0.0 2 2 0.013 4.1 1.4 0.0 7 38 174 210 169 214 0.71 # 61095 # 61739 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.380 1_85 - 374 Cons_hypoth95 PF03602.10 183 0.0021 11.9 0.0 1 1 1.4e-05 0.0044 10.9 0.0 94 141 90 134 35 147 0.76 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_68 - 255 RuvB_N PF05496.7 234 0.00061 13.3 0.0 1 1 3.7e-06 0.0011 12.5 0.0 54 110 103 169 77 183 0.67 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 AAA_19 PF13245.1 76 1.6e-05 19.1 0.0 1 1 2.2e-07 6.8e-05 17.1 0.0 10 43 101 128 94 148 0.77 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 3_11 - 560 AAA_10 PF12846.2 304 9.3e-06 19.7 0.0 1 1 5e-08 1.5e-05 19.0 0.0 3 162 220 405 218 553 0.52 # 10276 # 11955 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_64 - 289 SbcCD_C PF13558.1 90 0.00084 13.8 0.2 1 1 1.7e-05 0.0054 11.2 0.1 27 88 124 172 111 174 0.73 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 4_28 - 61 ThiF PF00899.16 136 1.7e-05 19.2 0.1 1 1 1.4e-07 2.2e-05 18.8 0.1 4 39 16 56 15 57 0.91 # 29961 # 30143 # -1 # ID=4_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 6_10 - 372 ThiF PF00899.16 136 0.0038 11.6 1.5 1 1 9.2e-05 0.014 9.7 0.8 5 33 190 218 186 234 0.92 # 8880 # 9995 # 1 # ID=6_10;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_83 - 560 ResIII PF04851.10 184 0.0041 11.4 5.3 1 1 0.00013 0.039 8.3 0.8 137 157 508 549 259 553 0.77 # 85907 # 87586 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_85 - 374 Methyltransf_31 PF13847.1 152 5.2e-06 20.6 0.0 1 1 2.8e-08 8.7e-06 19.9 0.0 7 111 46 154 40 191 0.79 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 6_10 - 372 FtsJ PF01728.14 181 0.00051 14.5 0.0 1 1 2.7e-06 0.00084 13.8 0.0 39 134 204 362 175 370 0.88 # 8880 # 9995 # 1 # ID=6_10;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_68 - 255 Zot PF05707.7 193 0.00087 13.3 0.0 1 1 9.8e-06 0.003 11.5 0.0 4 31 103 129 102 205 0.68 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 Viral_helicase1 PF01443.13 234 0.0015 12.6 0.0 1 1 1.1e-05 0.0033 11.4 0.0 4 75 105 173 103 184 0.81 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 3_31 - 110 tRNA_bind PF01588.15 95 1.8e-17 57.5 0.0 1 1 6.5e-20 2e-17 57.3 0.0 1 95 12 107 12 107 0.98 # 35616 # 35945 # -1 # ID=3_31;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 3_11 - 560 DEAD PF00270.24 169 2e-05 18.6 0.1 1 2 7.5e-07 0.00011 16.2 0.0 16 70 220 299 204 349 0.77 # 10276 # 11955 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 3_11 - 560 DEAD PF00270.24 169 2e-05 18.6 0.1 2 2 0.097 15 -0.5 0.0 61 112 381 431 375 437 0.75 # 10276 # 11955 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_68 - 255 DEAD PF00270.24 169 0.0017 12.3 0.4 1 2 0.052 7.9 0.4 0.2 102 144 18 60 16 74 0.67 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 DEAD PF00270.24 169 0.0017 12.3 0.4 2 2 8.7e-05 0.013 9.4 0.0 10 50 95 133 87 202 0.80 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 3_9 - 601 TrwB_AAD_bind PF10412.4 386 1.2e-07 25.1 0.1 1 2 3.7e-09 1.1e-06 21.9 0.0 261 383 4 129 1 132 0.76 # 5693 # 7495 # -1 # ID=3_9;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.353 3_9 - 601 TrwB_AAD_bind PF10412.4 386 1.2e-07 25.1 0.1 2 2 0.014 4.4 0.2 0.0 139 181 494 535 476 546 0.79 # 5693 # 7495 # -1 # ID=3_9;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.353 3_18 - 379 AAA_11 PF13086.1 236 0.0073 10.3 5.7 1 1 2.4e-05 0.0073 10.3 4.6 86 182 155 251 136 259 0.68 # 19600 # 20736 # 1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_29 - 390 RNase_PH PF01138.16 132 0.0023 12.7 0.1 1 2 0.0029 0.9 4.4 0.0 53 96 53 95 15 125 0.76 # 28414 # 29583 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_29 - 390 RNase_PH PF01138.16 132 0.0023 12.7 0.1 2 2 0.00095 0.29 5.9 0.0 50 102 278 333 255 349 0.67 # 28414 # 29583 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_36 - 426 Terminase_3 PF04466.8 387 7.3e-103 339.0 1.6 1 1 2.9e-105 9e-103 338.7 1.6 4 387 28 409 26 409 0.97 # 16685 # 17962 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 3_11 - 560 T4SS-DNA_transf PF02534.9 469 0.00028 14.0 0.6 1 2 0.00031 0.094 5.7 0.0 45 64 219 238 171 244 0.67 # 10276 # 11955 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 3_11 - 560 T4SS-DNA_transf PF02534.9 469 0.00028 14.0 0.6 2 2 0.00049 0.15 5.0 0.8 72 200 275 392 271 550 0.57 # 10276 # 11955 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 2_11 - 111 Smg4_UPF3 PF03467.10 176 8.8e-05 17.0 5.2 1 1 3.8e-07 0.00012 16.6 5.2 110 174 13 78 9 80 0.95 # 6498 # 6830 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_64 - 289 GTP_EFTU PF00009.22 188 0.00083 13.3 0.4 1 1 1.1e-05 0.0034 11.3 0.4 6 64 32 88 28 274 0.80 # 67444 # 68310 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_68 - 255 RNA_helicase PF00910.17 107 0.0027 12.4 0.0 1 1 2.1e-05 0.0066 11.1 0.0 3 64 104 175 102 202 0.71 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 6_10 - 372 TrkA_N PF02254.13 116 7.4e-05 17.2 0.0 1 1 5e-07 0.00015 16.2 0.0 2 42 191 233 190 245 0.83 # 8880 # 9995 # 1 # ID=6_10;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 3_6 - 328 S1 PF00575.18 74 0.00026 15.6 3.9 1 3 0.047 14 0.4 0.0 20 40 82 102 77 129 0.82 # 3440 # 4423 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.388 3_6 - 328 S1 PF00575.18 74 0.00026 15.6 3.9 2 3 5.8e-05 0.018 9.7 0.4 5 68 156 218 152 221 0.89 # 3440 # 4423 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.388 3_6 - 328 S1 PF00575.18 74 0.00026 15.6 3.9 3 3 0.003 0.92 4.2 0.4 6 27 244 266 240 269 0.88 # 3440 # 4423 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_68 - 255 AAA_24 PF13479.1 213 0.0019 12.3 0.0 1 1 1.2e-05 0.0036 11.4 0.0 7 41 103 145 98 161 0.76 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_85 - 374 Lambda_tail_I PF06805.7 82 0.0015 12.9 0.1 1 2 0.091 28 -0.8 0.0 33 52 178 197 174 211 0.74 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_85 - 374 Lambda_tail_I PF06805.7 82 0.0015 12.9 0.1 2 2 2.6e-05 0.008 10.5 0.0 18 54 223 263 219 270 0.88 # 87901 # 89022 # -1 # ID=1_85;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_68 - 255 AAA_25 PF13481.1 194 5.2e-06 20.4 0.1 1 2 0.097 30 -1.6 0.0 78 97 47 67 40 97 0.71 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 AAA_25 PF13481.1 194 5.2e-06 20.4 0.1 2 2 4.5e-08 1.4e-05 19.1 0.0 23 87 89 143 67 193 0.77 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_68 - 255 AAA_5 PF07728.9 139 1.1e-05 19.7 0.0 1 1 7.9e-08 2.4e-05 18.6 0.0 3 75 103 170 101 193 0.83 # 71597 # 72361 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9e83f544-092b-4be0-8b0b-3509c9722d87 # Target file: checkm_output/bins/pGCA_000013065.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000013065.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9e83f544-092b-4be0-8b0b-3509c9722d87 checkm_output/bins/pGCA_000013065.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:50 2020 # [ok]