# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_5 - 513 ATP_bind_3 PF01171.15 182 0.001 12.8 0.0 1 1 1.4e-05 0.0036 11.1 0.0 1 64 217 275 217 373 0.76 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 8_10 - 82 Seryl_tRNA_N PF02403.17 108 0.00097 13.4 0.2 1 1 2.1e-05 0.0011 13.3 0.2 45 93 26 75 6 81 0.82 # 9052 # 9297 # 1 # ID=8_10;partial=01;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.386 16_1 - 82 Seryl_tRNA_N PF02403.17 108 0.0011 13.2 0.4 1 1 2.5e-05 0.0013 13.0 0.4 45 93 26 75 10 81 0.83 # 2 # 247 # -1 # ID=16_1;partial=10;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.390 1_46 - 225 Seryl_tRNA_N PF02403.17 108 0.0012 13.2 0.8 1 1 5.5e-05 0.0029 11.9 0.4 43 97 24 79 5 85 0.84 # 31858 # 32532 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.409 2_28 - 195 Seryl_tRNA_N PF02403.17 108 0.0075 10.6 9.6 1 1 0.0034 0.18 6.2 9.5 33 100 71 140 69 159 0.60 # 22874 # 23458 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 8_5 - 337 Seryl_tRNA_N PF02403.17 108 0.0077 10.5 7.6 1 1 2.1e-05 0.0011 13.3 2.5 35 95 50 111 39 118 0.85 # 2841 # 3851 # 1 # ID=8_5;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.375 1_1 - 451 Terminase_6 PF03237.10 384 8e-57 186.9 0.0 1 1 7.2e-59 9.4e-57 186.7 0.0 1 382 65 431 65 433 0.93 # 55 # 1407 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.302 6_10 - 196 Terminase_6 PF03237.10 384 1.1e-33 110.7 0.4 1 1 9.5e-36 1.2e-33 110.6 0.4 59 261 2 191 1 194 0.96 # 8519 # 9106 # -1 # ID=6_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 6_16 - 254 MipZ PF09140.6 261 5.7e-13 42.7 0.1 1 2 9.4e-10 3.5e-08 27.0 0.1 2 67 8 68 7 84 0.77 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 6_16 - 254 MipZ PF09140.6 261 5.7e-13 42.7 0.1 2 2 1.2e-05 0.00045 13.6 0.0 71 128 102 158 88 162 0.80 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 5_13 - 254 MipZ PF09140.6 261 7.6e-12 39.1 0.1 1 1 1.9e-12 7.1e-11 35.9 0.1 2 129 8 155 7 177 0.69 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 7_2 - 254 MipZ PF09140.6 261 2.1e-11 37.6 0.1 1 1 3.2e-11 1.2e-09 31.9 0.1 2 129 8 154 7 169 0.67 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 4_15 - 272 MipZ PF09140.6 261 9.7e-11 35.4 0.3 1 2 5.7e-09 2.1e-07 24.5 0.1 2 52 8 56 7 81 0.83 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 4_15 - 272 MipZ PF09140.6 261 9.7e-11 35.4 0.3 2 2 0.00022 0.0084 9.4 0.0 65 129 93 156 54 169 0.81 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 3_23 - 254 MipZ PF09140.6 261 2.4e-09 30.9 0.1 1 1 1.5e-09 5.6e-08 26.4 0.1 2 128 8 154 7 183 0.59 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 1_13 - 247 MipZ PF09140.6 261 4.2e-08 26.8 0.1 1 2 1.4e-08 5.1e-07 23.2 0.1 2 67 8 68 7 92 0.73 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 1_13 - 247 MipZ PF09140.6 261 4.2e-08 26.8 0.1 2 2 0.045 1.7 1.9 0.0 65 128 93 153 60 156 0.63 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 12_2 - 256 MipZ PF09140.6 261 5.1e-08 26.5 0.0 1 1 1.2e-08 4.6e-07 23.4 0.0 2 129 4 149 3 171 0.67 # 596 # 1363 # -1 # ID=12_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 5_13 - 254 YhjQ PF06564.7 244 9.8e-12 39.0 0.0 1 1 2.4e-13 1.6e-11 38.3 0.0 3 150 8 157 7 169 0.79 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 3_23 - 254 YhjQ PF06564.7 244 0.00061 13.4 0.0 1 1 1.3e-05 0.00085 13.0 0.0 3 144 8 151 6 160 0.75 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 4_15 - 272 YhjQ PF06564.7 244 0.00064 13.4 0.0 1 1 2.3e-05 0.0015 12.1 0.0 3 145 8 153 6 162 0.71 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 1_13 - 247 YhjQ PF06564.7 244 0.00072 13.2 0.0 1 1 2.2e-05 0.0014 12.2 0.0 3 143 8 149 7 160 0.72 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 1_8 - 132 SSB PF00436.20 104 2.3e-22 73.1 0.0 1 1 1.5e-24 3.9e-22 72.4 0.0 1 101 4 104 4 107 0.95 # 5547 # 5942 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 5_5 - 182 DUF2110 PF09883.4 225 0.00077 13.4 0.6 1 1 2.2e-05 0.0012 12.8 0.6 3 86 80 164 77 174 0.86 # 4489 # 5034 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.266 6_7 - 196 DUF2110 PF09883.4 225 0.015 9.2 7.4 1 2 0.042 2.2 2.1 0.1 5 33 56 84 53 96 0.81 # 5603 # 6190 # -1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 6_7 - 196 DUF2110 PF09883.4 225 0.015 9.2 7.4 2 2 0.00018 0.0092 9.8 0.5 3 38 115 151 113 157 0.86 # 5603 # 6190 # -1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 11_2 - 272 DUF2110 PF09883.4 225 0.017 9.0 21.7 1 4 0.0049 0.26 5.1 0.3 10 34 107 132 98 140 0.78 # 589 # 1404 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 11_2 - 272 DUF2110 PF09883.4 225 0.017 9.0 21.7 2 4 0.0046 0.24 5.2 0.4 7 34 134 161 131 168 0.82 # 589 # 1404 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 11_2 - 272 DUF2110 PF09883.4 225 0.017 9.0 21.7 3 4 0.0055 0.29 5.0 0.3 8 33 164 189 161 195 0.82 # 589 # 1404 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 11_2 - 272 DUF2110 PF09883.4 225 0.017 9.0 21.7 4 4 0.0012 0.063 7.1 0.6 7 38 192 223 187 229 0.85 # 589 # 1404 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 6_9 - 163 DUF2110 PF09883.4 225 0.019 8.8 7.2 1 2 0.013 0.7 3.7 0.3 5 34 56 85 53 98 0.82 # 7989 # 8477 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 6_9 - 163 DUF2110 PF09883.4 225 0.019 8.8 7.2 2 2 0.00029 0.015 9.1 0.5 11 38 101 129 91 139 0.81 # 7989 # 8477 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 19_1 - 208 DUF2110 PF09883.4 225 0.025 8.4 11.7 1 3 0.0081 0.43 4.4 0.8 7 72 74 135 69 140 0.68 # 2 # 625 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.276 19_1 - 208 DUF2110 PF09883.4 225 0.025 8.4 11.7 2 3 0.0049 0.26 5.1 0.3 11 33 128 151 116 155 0.81 # 2 # 625 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.276 19_1 - 208 DUF2110 PF09883.4 225 0.025 8.4 11.7 3 3 0.0008 0.042 7.7 0.8 12 38 148 174 139 184 0.84 # 2 # 625 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.276 3_23 - 254 AAA_22 PF13401.1 131 0.0016 12.9 0.1 1 1 2.6e-05 0.0068 10.8 0.1 14 110 17 145 9 175 0.69 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 5_13 - 254 ATP_bind_1 PF03029.12 238 0.00022 15.0 0.1 1 2 8.5e-06 0.0011 12.8 0.1 6 44 17 55 15 151 0.73 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 5_13 - 254 ATP_bind_1 PF03029.12 238 0.00022 15.0 0.1 2 2 0.048 6.3 0.5 0.0 90 99 124 133 103 177 0.69 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 3_23 - 254 ATP_bind_1 PF03029.12 238 0.00029 14.7 0.0 1 1 5e-06 0.00066 13.5 0.0 6 44 17 55 15 107 0.84 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 6_16 - 254 AAA_17 PF13207.1 121 0.001 14.2 0.5 1 1 0.00011 0.0098 11.0 0.5 9 107 17 124 16 246 0.73 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 7_2 - 254 AAA_17 PF13207.1 121 0.001 14.1 0.1 1 1 3.4e-05 0.003 12.7 0.1 9 101 17 114 15 221 0.76 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 9_8 - 221 AAA_17 PF13207.1 121 0.024 9.7 5.8 1 1 0.00056 0.049 8.7 5.8 14 106 36 145 35 188 0.50 # 6144 # 6806 # 1 # ID=9_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.265 3_5 - 513 NAD_synthase PF02540.12 242 4e-11 36.5 0.0 1 2 8.2e-12 2.2e-09 30.8 0.0 4 94 201 290 198 300 0.88 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 3_5 - 513 NAD_synthase PF02540.12 242 4e-11 36.5 0.0 2 2 0.0022 0.57 3.2 0.0 148 177 360 389 358 393 0.90 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 3_23 - 254 ArsA_ATPase PF02374.10 305 1e-11 38.7 1.2 1 1 9.3e-13 3.5e-11 36.9 0.5 7 137 13 135 6 142 0.66 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 4_15 - 272 ArsA_ATPase PF02374.10 305 2.5e-10 34.1 0.2 1 1 1.5e-10 5.8e-09 29.6 0.2 7 136 13 135 7 139 0.69 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 5_13 - 254 ArsA_ATPase PF02374.10 305 8e-10 32.4 0.2 1 1 8.2e-11 3.1e-09 30.5 0.1 9 141 15 139 7 209 0.74 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 7_2 - 254 ArsA_ATPase PF02374.10 305 3.5e-09 30.3 0.2 1 1 6.9e-10 2.6e-08 27.5 0.2 7 136 13 133 6 138 0.72 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 6_16 - 254 ArsA_ATPase PF02374.10 305 8e-09 29.2 0.2 1 1 6.7e-10 2.5e-08 27.5 0.2 7 136 13 138 6 141 0.68 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 1_13 - 247 ArsA_ATPase PF02374.10 305 1.1e-08 28.6 0.0 1 1 7.2e-10 2.7e-08 27.4 0.0 9 136 15 133 7 136 0.77 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 12_2 - 256 ArsA_ATPase PF02374.10 305 0.00055 13.3 2.1 1 1 4e-05 0.0015 11.8 1.2 9 136 11 128 3 190 0.74 # 596 # 1363 # -1 # ID=12_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_1 - 451 PhoH PF02562.11 205 0.00012 15.6 0.1 1 2 1.3e-05 0.0034 10.9 0.0 5 46 45 88 42 111 0.79 # 55 # 1407 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.302 1_1 - 451 PhoH PF02562.11 205 0.00012 15.6 0.1 2 2 0.0053 1.4 2.3 0.0 115 152 159 196 152 214 0.86 # 55 # 1407 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.302 4_4 - 272 Phe_tRNA-synt_N PF02912.13 73 0.00044 14.3 3.1 1 3 0.0077 2 2.5 0.0 27 55 8 36 3 38 0.80 # 5095 # 5910 # -1 # ID=4_4;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.382 4_4 - 272 Phe_tRNA-synt_N PF02912.13 73 0.00044 14.3 3.1 2 3 0.058 15 -0.3 0.2 45 67 70 92 64 94 0.74 # 5095 # 5910 # -1 # ID=4_4;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.382 4_4 - 272 Phe_tRNA-synt_N PF02912.13 73 0.00044 14.3 3.1 3 3 4e-05 0.01 9.8 0.0 20 53 214 247 213 263 0.87 # 5095 # 5910 # -1 # ID=4_4;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.382 4_15 - 272 VirC1 PF07015.6 231 3.5e-07 23.8 1.2 1 2 1.5e-06 5.4e-05 16.6 0.0 3 44 8 48 7 61 0.82 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 4_15 - 272 VirC1 PF07015.6 231 3.5e-07 23.8 1.2 2 2 0.0089 0.33 4.2 0.0 83 180 125 215 118 222 0.75 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 7_2 - 254 VirC1 PF07015.6 231 2.8e-06 20.8 0.0 1 2 2e-06 7.6e-05 16.1 0.0 2 46 7 50 6 72 0.85 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 7_2 - 254 VirC1 PF07015.6 231 2.8e-06 20.8 0.0 2 2 0.023 0.87 2.8 0.0 82 120 122 160 98 218 0.74 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 6_16 - 254 VirC1 PF07015.6 231 5.4e-06 19.9 0.0 1 1 5.5e-07 2.1e-05 18.0 0.0 2 55 7 59 6 97 0.76 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 5_13 - 254 VirC1 PF07015.6 231 1.1e-05 18.9 0.0 1 2 0.0006 0.022 8.0 0.0 3 47 8 52 6 71 0.87 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 5_13 - 254 VirC1 PF07015.6 231 1.1e-05 18.9 0.0 2 2 0.00034 0.013 8.8 0.1 83 156 124 197 108 208 0.89 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 1_13 - 247 VirC1 PF07015.6 231 1.2e-05 18.7 0.3 1 2 5.5e-06 0.0002 14.7 0.0 2 50 7 54 6 71 0.82 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 1_13 - 247 VirC1 PF07015.6 231 1.2e-05 18.7 0.3 2 2 0.09 3.4 0.9 0.0 83 151 123 187 109 242 0.67 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 3_23 - 254 VirC1 PF07015.6 231 2.5e-05 17.7 0.0 1 1 5e-06 0.00019 14.8 0.0 2 40 7 45 6 84 0.87 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 12_2 - 256 VirC1 PF07015.6 231 0.0013 12.1 0.1 1 2 0.00042 0.016 8.5 0.0 3 40 4 40 1 48 0.70 # 596 # 1363 # -1 # ID=12_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 12_2 - 256 VirC1 PF07015.6 231 0.0013 12.1 0.1 2 2 0.085 3.2 1.0 0.0 83 120 118 157 114 187 0.75 # 596 # 1363 # -1 # ID=12_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 3_5 - 513 TIGR02432 TIGR02432 189 0.00014 15.7 0.1 1 1 1.6e-06 0.00042 14.2 0.0 1 158 217 373 217 381 0.67 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 3_23 - 254 Fer4_NifH PF00142.13 273 1.7e-06 21.6 0.3 1 2 3e-07 1.3e-05 18.7 0.1 8 55 15 62 7 93 0.80 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 3_23 - 254 Fer4_NifH PF00142.13 273 1.7e-06 21.6 0.3 2 2 0.077 3.4 1.0 0.0 190 241 194 243 176 251 0.65 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 5_13 - 254 Fer4_NifH PF00142.13 273 8.2e-06 19.4 0.1 1 1 3.8e-07 1.6e-05 18.4 0.0 8 51 15 58 9 83 0.84 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 6_16 - 254 Fer4_NifH PF00142.13 273 8.8e-05 16.0 0.3 1 1 4.2e-06 0.00018 15.0 0.0 8 55 15 61 9 86 0.81 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 4_15 - 272 Fer4_NifH PF00142.13 273 0.00041 13.8 0.6 1 1 1.4e-05 0.00063 13.2 0.1 8 52 15 57 9 88 0.70 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 7_2 - 254 Fer4_NifH PF00142.13 273 0.0012 12.3 0.1 1 1 5.7e-05 0.0025 11.3 0.0 8 53 15 59 7 85 0.74 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 1_13 - 247 Fer4_NifH PF00142.13 273 0.0021 11.5 0.0 1 1 8e-05 0.0035 10.8 0.0 8 44 15 50 8 88 0.83 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 3_5 - 513 QueC PF06508.8 210 4.5e-06 20.3 0.0 1 1 1.1e-07 2.8e-05 17.7 0.0 2 176 218 381 217 387 0.81 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 7_2 - 254 AAA_18 PF13238.1 129 0.0024 12.5 1.2 1 1 1.8e-05 0.0047 11.5 0.0 8 100 17 131 15 138 0.64 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 2_28 - 195 AAA_13 PF13166.1 712 2.2e-07 23.9 5.5 1 1 2.8e-09 2.5e-07 23.8 5.5 345 460 43 150 7 168 0.75 # 22874 # 23458 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 8_7 - 217 AAA_13 PF13166.1 712 1.6e-05 17.8 18.1 1 1 2.5e-07 2.2e-05 17.3 18.1 263 413 37 179 35 193 0.69 # 5446 # 6096 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.280 2_2 - 208 AAA_13 PF13166.1 712 0.00017 14.4 20.3 1 1 2.4e-06 0.00021 14.1 20.3 269 446 42 167 13 188 0.36 # 1071 # 1694 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.276 7_2 - 254 CbiA PF01656.18 195 3.7e-36 118.6 0.2 1 1 1.2e-37 4.6e-36 118.3 0.2 1 176 9 204 9 226 0.84 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 4_15 - 272 CbiA PF01656.18 195 4.3e-35 115.1 0.8 1 1 1.5e-36 5.6e-35 114.8 0.8 1 174 9 201 9 220 0.76 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 6_16 - 254 CbiA PF01656.18 195 1.3e-34 113.5 0.3 1 1 4.3e-36 1.6e-34 113.2 0.3 1 178 9 210 9 226 0.80 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 5_13 - 254 CbiA PF01656.18 195 5.8e-34 111.4 0.2 1 1 1.8e-35 6.8e-34 111.2 0.2 1 193 9 223 9 225 0.79 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 3_23 - 254 CbiA PF01656.18 195 5.7e-32 104.9 0.1 1 1 2e-33 7.4e-32 104.6 0.1 1 191 9 218 9 223 0.75 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 12_2 - 256 CbiA PF01656.18 195 3.4e-30 99.1 0.1 1 1 1.2e-31 4.6e-30 98.7 0.1 1 194 5 220 5 221 0.77 # 596 # 1363 # -1 # ID=12_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_13 - 247 CbiA PF01656.18 195 9.2e-29 94.5 0.1 1 1 3e-30 1.1e-28 94.2 0.1 1 175 9 202 9 221 0.80 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 3_5 - 513 PAPS_reduct PF01507.14 174 6e-08 26.9 0.0 1 1 4.2e-10 1.1e-07 26.1 0.0 2 163 218 390 217 401 0.85 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 2_30 - 900 N6_Mtase PF02384.11 311 4.8e-11 36.5 0.7 1 1 1.8e-13 4.8e-11 36.5 0.7 9 188 163 411 157 420 0.72 # 25449 # 28148 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.257 3_5 - 513 Asn_synthase PF00733.16 255 0.00056 13.7 0.0 1 2 0.06 16 -0.9 0.0 19 27 47 55 39 60 0.87 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 3_5 - 513 Asn_synthase PF00733.16 255 0.00056 13.7 0.0 2 2 9.2e-06 0.0024 11.6 0.0 11 58 210 256 198 313 0.79 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 4_15 - 272 AAA_31 PF13614.1 157 5.1e-17 56.5 0.9 1 1 1.4e-18 5.1e-17 56.5 0.9 2 152 8 159 7 164 0.80 # 14560 # 15375 # 1 # ID=4_15;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.239 7_2 - 254 AAA_31 PF13614.1 157 5.7e-17 56.4 1.2 1 1 2.8e-18 1e-16 55.5 1.2 1 151 7 156 7 161 0.81 # 224 # 985 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=11-12bp;gc_cont=0.247 6_16 - 254 AAA_31 PF13614.1 157 4.6e-15 50.1 0.5 1 1 6.5e-16 2.4e-14 47.8 0.5 1 154 7 164 7 167 0.87 # 12946 # 13707 # 1 # ID=6_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.252 5_13 - 254 AAA_31 PF13614.1 157 1.9e-14 48.2 0.6 1 1 8.3e-16 3.1e-14 47.5 0.6 2 155 8 161 7 163 0.89 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 12_2 - 256 AAA_31 PF13614.1 157 4.4e-13 43.7 0.1 1 1 2.1e-14 7.8e-13 42.9 0.1 2 150 4 150 3 157 0.81 # 596 # 1363 # -1 # ID=12_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 3_23 - 254 AAA_31 PF13614.1 157 5.2e-13 43.5 0.5 1 1 2.5e-14 9.5e-13 42.6 0.5 1 148 7 154 7 163 0.76 # 24356 # 25117 # 1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.281 1_13 - 247 AAA_31 PF13614.1 157 1.7e-12 41.8 0.6 1 1 4.7e-14 1.7e-12 41.8 0.6 1 149 7 155 7 161 0.82 # 9375 # 10115 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.251 2_30 - 900 Methyltransf_26 PF13659.1 117 4.4e-06 21.0 0.0 1 1 3.9e-08 1e-05 19.8 0.0 3 88 217 353 215 408 0.75 # 25449 # 28148 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.257 2_28 - 195 AAA_27 PF13514.1 1111 0.00031 12.7 0.7 1 1 1.3e-06 0.00033 12.7 0.7 752 832 69 152 4 159 0.67 # 22874 # 23458 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 11_2 - 272 DUF3584 PF12128.3 1201 2e-07 23.0 15.8 1 1 8e-09 3e-07 22.4 15.8 257 430 65 241 38 244 0.80 # 589 # 1404 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 19_1 - 208 DUF3584 PF12128.3 1201 1.2e-06 20.4 7.0 1 1 4.3e-08 1.6e-06 20.0 7.0 657 803 30 185 11 192 0.71 # 2 # 625 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.276 9_4 - 211 DUF3584 PF12128.3 1201 1.4e-05 16.8 10.5 1 1 1.1e-06 4e-05 15.4 4.5 257 336 105 185 101 206 0.87 # 2793 # 3425 # 1 # ID=9_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.278 10_4 - 232 DUF3584 PF12128.3 1201 1.8e-05 16.5 12.9 1 1 6e-07 2.2e-05 16.2 12.9 299 434 61 198 34 209 0.80 # 3353 # 4048 # -1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.280 2_28 - 195 DUF3584 PF12128.3 1201 2.2e-05 16.2 1.3 1 1 6.7e-07 2.5e-05 16.0 1.3 354 463 65 135 6 172 0.49 # 22874 # 23458 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 2_2 - 208 DUF3584 PF12128.3 1201 6.1e-05 14.7 10.5 1 1 2.3e-06 8.6e-05 14.2 10.5 334 451 67 183 29 189 0.63 # 1071 # 1694 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.276 5_3 - 203 DUF3584 PF12128.3 1201 0.00015 13.5 5.2 1 1 4.8e-06 0.00018 13.2 5.2 276 368 56 149 37 173 0.59 # 2320 # 2928 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 3_4 - 486 CmcI PF04989.7 206 0.00033 14.3 0.5 1 1 2.3e-06 0.00061 13.4 0.5 60 131 193 265 173 271 0.78 # 2942 # 4399 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 22_2 - 82 TIGR00459 TIGR00459 586 0.0016 10.7 0.0 1 1 6.8e-06 0.0018 10.6 0.0 517 571 6 61 3 74 0.79 # 292 # 537 # 1 # ID=22_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 2_15 - 398 Terminase_3 PF04466.8 387 9.8e-91 298.9 0.0 1 1 1.7e-92 1.5e-90 298.3 0.0 3 386 20 394 18 395 0.96 # 11589 # 12782 # 1 # ID=2_15;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.358 1_1 - 451 Terminase_3 PF04466.8 387 1.9e-10 34.6 0.7 1 1 3.6e-12 3.1e-10 33.9 0.7 2 215 61 273 60 296 0.82 # 55 # 1407 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.302 6_10 - 196 Terminase_3 PF04466.8 387 4.1e-09 30.2 0.3 1 1 5.6e-11 4.9e-09 29.9 0.3 100 220 43 156 26 178 0.85 # 8519 # 9106 # -1 # ID=6_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 9_2 - 95 TIGR00344 TIGR00344 847 0.00083 11.5 3.8 1 1 3.8e-06 0.001 11.3 3.8 710 789 6 86 2 92 0.89 # 1503 # 1787 # 1 # ID=9_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 8_7 - 217 AAA_32 PF13654.1 509 0.0045 9.9 8.6 1 2 3.4e-05 0.0089 8.9 3.6 161 250 36 121 10 133 0.80 # 5446 # 6096 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.280 8_7 - 217 AAA_32 PF13654.1 509 0.0045 9.9 8.6 2 2 0.00077 0.2 4.4 1.2 172 219 116 163 105 189 0.58 # 5446 # 6096 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.280 1_5 - 80 MethyltransfD12 PF02086.10 260 5.3e-10 33.4 0.1 1 1 2.4e-12 6.3e-10 33.1 0.1 3 74 8 75 7 77 0.90 # 4509 # 4748 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.296 5_13 - 254 ArgK PF03308.11 267 0.003 10.6 0.0 1 1 1.8e-05 0.0046 10.0 0.0 38 71 16 49 5 52 0.88 # 10127 # 10888 # 1 # ID=5_13;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.230 3_5 - 513 tRNA_Me_trans PF03054.11 356 0.0015 11.3 0.0 1 1 1e-05 0.0026 10.5 0.0 1 32 216 248 216 263 0.83 # 4419 # 5957 # -1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.311 25_1 - 148 GTP_EFTU PF00009.22 188 0.0084 9.8 4.7 1 1 0.0018 0.24 5.1 4.7 130 179 82 131 16 146 0.75 # 71 # 514 # -1 # ID=25_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 9_8 - 221 GTP_EFTU PF00009.22 188 0.023 8.4 9.1 1 1 0.05 6.6 0.4 9.1 130 179 155 204 67 219 0.71 # 6144 # 6806 # 1 # ID=9_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.265 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f2e66da2-825c-4e2f-bbf8-d8d1c45787b9 # Target file: checkm_output/bins/pGCA_000012085.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000012085.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f2e66da2-825c-4e2f-bbf8-d8d1c45787b9 checkm_output/bins/pGCA_000012085.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:47 2020 # [ok]