# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 272 cobW PF02492.14 178 0.00027 11.2 0.8 1 1 1.8e-05 0.0004 10.7 0.1 113 171 94 156 65 162 0.77 # 9269 # 10084 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.297 1_23 - 211 FeoB_N PF02421.13 156 5.8e-05 13.2 3.9 1 2 4.4e-05 0.001 9.2 0.0 3 24 32 53 30 58 0.89 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 FeoB_N PF02421.13 156 5.8e-05 13.2 3.9 2 2 0.0016 0.038 4.1 1.0 86 131 164 209 133 210 0.77 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_11 - 272 AAA_22 PF13401.1 131 1e-28 90.9 0.0 1 1 1.6e-29 1.9e-28 90.1 0.0 2 131 25 171 24 171 0.86 # 9269 # 10084 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.297 1_23 - 211 AAA_22 PF13401.1 131 9.7e-07 19.8 1.0 1 1 2.8e-07 3.2e-06 18.2 1.0 4 129 29 197 26 199 0.73 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_15 PF13175.1 415 4.7e-09 26.5 8.6 1 2 4.4e-06 0.0001 12.2 6.5 8 110 14 108 6 126 0.61 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_15 PF13175.1 415 4.7e-09 26.5 8.6 2 2 4.1e-07 9.5e-06 15.6 2.6 291 414 89 195 64 196 0.67 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_17 PF13207.1 121 6.6e-06 17.8 0.2 1 1 8.2e-07 1.9e-05 16.3 0.2 3 56 33 88 32 209 0.73 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_21 PF13304.1 303 5.8e-17 53.3 5.1 1 1 7.4e-16 1.7e-14 45.2 5.1 3 301 33 195 31 197 0.88 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 Zeta_toxin PF06414.7 201 3.1e-05 13.9 0.0 1 1 2e-06 4.5e-05 13.4 0.0 14 62 27 76 17 98 0.82 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 SMC_N PF02463.14 220 5.4e-08 23.1 5.7 1 1 8.2e-09 1.9e-07 21.3 5.7 18 213 22 207 5 210 0.75 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_16 PF13191.1 185 4.2e-05 14.4 0.4 1 1 3.1e-06 7e-05 13.7 0.4 24 42 29 47 19 200 0.83 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_23 PF13476.1 202 0.00011 13.4 9.7 1 1 2.7e-05 0.00062 10.9 9.6 10 131 19 140 11 193 0.58 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_18 PF13238.1 129 0.00024 12.2 4.4 1 1 5.6e-05 0.0013 9.9 4.4 3 64 34 122 33 205 0.63 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_13 PF13166.1 712 9e-08 21.7 3.2 1 2 0.00016 0.0038 6.4 1.1 23 75 36 85 15 121 0.63 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_13 PF13166.1 712 9e-08 21.7 3.2 2 2 2.9e-07 6.6e-06 15.6 0.3 500 578 133 200 100 207 0.82 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_29 PF13555.1 62 8.6e-08 22.6 0.1 1 1 6.6e-09 1.5e-07 21.8 0.1 13 40 20 46 14 50 0.84 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_11 - 272 AAA PF00004.24 132 1.3e-06 19.5 0.1 1 2 0.00028 0.0065 7.5 0.0 3 14 32 43 31 58 0.89 # 9269 # 10084 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.297 1_11 - 272 AAA PF00004.24 132 1.3e-06 19.5 0.1 2 2 6.1e-05 0.0014 9.7 0.0 34 111 110 167 65 189 0.83 # 9269 # 10084 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.297 1_23 - 211 MMR_HSR1 PF01926.18 116 2.4e-06 18.4 2.4 1 1 2.4e-07 5.5e-06 17.2 2.4 3 100 33 144 31 206 0.63 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 DUF258 PF03193.11 161 1.5e-09 28.0 0.1 1 1 1.1e-10 2.6e-09 27.3 0.1 13 67 6 61 3 72 0.87 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 NTPase_1 PF03266.10 168 6.1e-05 13.6 0.4 1 2 0.0012 0.028 4.9 0.0 3 19 33 49 31 59 0.86 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 NTPase_1 PF03266.10 168 6.1e-05 13.6 0.4 2 2 0.00029 0.0068 6.9 0.2 74 136 130 194 106 209 0.74 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 Dynamin_N PF00350.18 168 6.4e-05 13.6 2.6 1 1 8.4e-06 0.00019 12.1 2.6 2 30 33 61 33 198 0.69 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 ABC_tran PF00005.22 137 2.3e-37 119.2 0.1 1 1 1.4e-38 3.2e-37 118.8 0.1 1 136 19 161 19 162 0.93 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 AAA_10 PF12846.2 304 3.5e-05 14.1 0.0 1 1 2.5e-06 5.8e-05 13.4 0.0 3 22 31 50 29 81 0.84 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_23 - 211 SbcCD_C PF13558.1 90 5.3e-06 17.2 0.0 1 1 3.1e-06 7.1e-05 13.6 0.0 11 88 112 176 104 178 0.81 # 20006 # 20638 # -1 # ID=1_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_11 - 272 DEAD PF00270.24 169 0.00068 10.0 2.3 1 1 4e-05 0.00093 9.5 0.9 113 143 121 151 31 165 0.80 # 9269 # 10084 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.297 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eeedc1a9-7507-40d0-a826-f4e74346502a # Target file: checkm_output/bins/pGCA_000011525.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000011525.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eeedc1a9-7507-40d0-a826-f4e74346502a checkm_output/bins/pGCA_000011525.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:42 2020 # [ok]