# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_40 - 193 MipZ PF09140.6 261 1.2e-12 39.8 0.5 1 2 1.3e-09 3.2e-08 25.4 0.1 2 40 2 40 1 55 0.88 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 MipZ PF09140.6 261 1.2e-12 39.8 0.5 2 2 7.3e-06 0.00018 13.1 0.1 94 135 71 112 57 123 0.84 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 196 MipZ PF09140.6 261 3.3e-12 38.4 0.9 1 1 6e-12 1.5e-10 33.0 0.9 3 108 3 110 1 124 0.63 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 195 MipZ PF09140.6 261 2.1e-10 32.5 0.1 1 2 1.1e-07 2.6e-06 19.1 0.0 5 66 5 65 1 77 0.79 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 2_16 - 195 MipZ PF09140.6 261 2.1e-10 32.5 0.1 2 2 1.4e-05 0.00034 12.2 0.1 98 137 75 114 64 147 0.85 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_40 - 193 YhjQ PF06564.7 244 0.00087 11.1 0.1 1 2 4.7e-05 0.0035 9.1 0.0 8 41 7 40 1 42 0.89 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 YhjQ PF06564.7 244 0.00087 11.1 0.1 2 2 0.045 3.3 -0.6 0.0 117 149 75 107 60 122 0.77 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_3 - 1155 UvrD_C_2 PF13538.1 104 2.8e-06 19.9 0.0 1 1 3.8e-07 1.4e-05 17.7 0.0 3 103 736 843 734 844 0.71 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 1187 UvrD_C_2 PF13538.1 104 5.4e-06 19.0 0.1 1 1 4.8e-07 1.8e-05 17.4 0.1 4 100 715 818 713 829 0.69 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_32 - 690 AAA_22 PF13401.1 131 1.4e-07 24.2 0.2 1 1 7.6e-08 1.4e-06 21.0 0.0 9 117 44 197 38 215 0.77 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_36 - 1187 AAA_22 PF13401.1 131 1.5e-06 20.8 0.0 1 1 3.8e-07 6.9e-06 18.7 0.0 6 126 465 580 460 585 0.82 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_3 - 1155 AAA_22 PF13401.1 131 4e-06 19.5 0.0 1 1 1.4e-06 2.5e-05 16.9 0.0 8 126 490 603 485 608 0.79 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 242 AAA_22 PF13401.1 131 0.0003 13.4 0.0 1 1 5.4e-05 0.00099 11.7 0.0 4 114 35 182 31 197 0.64 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 2_16 - 195 DUF1611 PF07755.6 301 0.00075 10.6 0.0 1 1 1.5e-05 0.0011 10.1 0.0 114 151 2 39 1 47 0.87 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_40 - 193 ATP_bind_1 PF03029.12 238 6.8e-05 14.9 0.0 1 1 3.3e-06 0.00024 13.1 0.0 6 37 11 42 8 50 0.90 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 SRP54 PF00448.17 196 5.2e-05 15.2 0.0 1 1 1.2e-06 8.7e-05 14.5 0.0 10 38 10 38 1 45 0.87 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_32 - 690 KAP_NTPase PF07693.9 325 3e-61 199.6 0.0 1 1 7e-63 5.1e-61 198.8 0.0 2 321 20 299 19 303 0.96 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 2_6 - 196 AAA_17 PF13207.1 121 0.00018 14.8 0.0 1 1 3.8e-06 0.00028 14.2 0.0 9 78 11 113 9 168 0.61 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 242 AAA_21 PF13304.1 303 1.3e-14 47.2 0.0 1 2 7.4e-06 0.00054 12.4 0.3 2 30 38 64 37 91 0.67 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_45 - 242 AAA_21 PF13304.1 303 1.3e-14 47.2 0.0 2 2 2.8e-12 2.1e-10 33.5 0.0 191 298 110 192 63 196 0.70 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_40 - 193 MobB PF03205.9 140 0.00033 12.8 0.0 1 1 7.9e-06 0.00058 12.1 0.0 7 39 8 39 1 53 0.82 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 196 LpxK PF02606.9 326 0.00033 12.1 0.0 1 1 1.5e-05 0.00055 11.4 0.0 46 71 10 35 2 46 0.93 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_40 - 193 LpxK PF02606.9 326 0.00042 11.7 0.0 1 1 1.5e-05 0.00054 11.4 0.0 45 71 9 35 1 53 0.88 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 ArsA_ATPase PF02374.10 305 5.3e-08 24.6 0.2 1 1 4.2e-09 1e-07 23.7 0.1 6 48 6 48 1 75 0.87 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 196 ArsA_ATPase PF02374.10 305 6.1e-07 21.1 0.0 1 1 3.9e-08 9.5e-07 20.5 0.0 6 38 6 38 1 54 0.88 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 195 ArsA_ATPase PF02374.10 305 2e-05 16.2 0.0 1 1 1.2e-06 2.9e-05 15.7 0.0 1 42 1 42 1 54 0.84 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_36 - 1187 PhoH PF02562.11 205 1.6e-05 16.7 0.1 1 2 0.00097 0.071 4.7 0.1 6 34 448 478 443 503 0.80 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_36 - 1187 PhoH PF02562.11 205 1.6e-05 16.7 0.1 2 2 4.1e-05 0.003 9.2 0.0 121 170 544 593 542 614 0.80 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_16 - 195 AAA_26 PF13500.1 199 0.00037 12.6 0.1 1 2 4.4e-05 0.0032 9.5 0.1 8 35 8 35 4 105 0.91 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 2_16 - 195 AAA_26 PF13500.1 199 0.00037 12.6 0.1 2 2 0.016 1.2 1.2 0.0 155 196 121 167 89 169 0.75 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 1_32 - 690 Zeta_toxin PF06414.7 201 0.00073 11.1 0.0 1 2 4.7e-05 0.0034 8.9 0.0 4 41 29 64 26 72 0.82 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 690 Zeta_toxin PF06414.7 201 0.00073 11.1 0.0 2 2 0.062 4.5 -1.3 0.0 140 185 330 376 325 384 0.79 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_45 - 242 SMC_N PF02463.14 220 6.6e-06 17.9 0.0 1 2 0.00013 0.0095 7.6 0.0 25 44 36 55 18 62 0.81 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_45 - 242 SMC_N PF02463.14 220 6.6e-06 17.9 0.0 2 2 7.1e-05 0.0052 8.4 0.0 139 200 136 194 97 211 0.77 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 2_16 - 195 VirC1 PF07015.6 231 3e-12 38.5 0.0 1 1 2.4e-13 5.8e-12 37.6 0.0 4 132 3 124 1 136 0.81 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 2_6 - 196 VirC1 PF07015.6 231 1.3e-09 29.9 0.0 1 1 1.2e-10 2.9e-09 28.8 0.0 4 182 3 169 1 182 0.84 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_40 - 193 VirC1 PF07015.6 231 1.4e-08 26.5 0.0 1 1 1.4e-09 3.5e-08 25.2 0.0 4 120 3 112 1 124 0.82 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 Fer4_NifH PF00142.13 273 9.6e-05 14.1 0.0 1 1 4.1e-06 0.00015 13.4 0.0 5 40 6 41 2 50 0.90 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 196 Fer4_NifH PF00142.13 273 0.00013 13.6 0.0 1 1 5.3e-06 0.00019 13.1 0.0 4 37 5 38 2 43 0.89 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_32 - 690 Arch_ATPase PF01637.13 234 2.4e-06 19.8 0.0 1 1 6.9e-08 5e-06 18.8 0.0 21 131 40 177 28 191 0.76 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 690 AAA_16 PF13191.1 185 1.1e-06 21.2 0.3 1 1 5.2e-07 1.3e-05 17.7 0.0 28 176 43 190 17 198 0.67 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_36 - 1187 AAA_16 PF13191.1 185 0.00015 14.2 0.4 1 1 6.1e-06 0.00015 14.2 0.4 16 117 455 560 449 691 0.62 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_3 - 1155 AAA_16 PF13191.1 185 0.018 7.5 8.9 1 1 5.2e-05 0.0013 11.2 0.2 16 56 478 518 473 628 0.72 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_40 - 193 CbiA PF01656.18 195 1.4e-26 85.5 0.0 1 1 8e-28 1.9e-26 85.1 0.0 1 177 3 151 3 168 0.78 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_16 - 195 CbiA PF01656.18 195 5.8e-25 80.3 0.0 1 1 4.3e-26 1.1e-24 79.4 0.0 1 192 3 165 3 168 0.74 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 2_6 - 196 CbiA PF01656.18 195 1.7e-22 72.2 0.0 1 1 1.1e-23 2.7e-22 71.6 0.0 1 178 3 156 3 171 0.78 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 242 AAA_29 PF13555.1 62 2.3e-05 16.4 0.0 1 1 6e-07 4.4e-05 15.5 0.0 16 40 29 52 22 55 0.81 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 2_22 - 539 N6_Mtase PF02384.11 311 1.5e-08 26.4 0.0 1 1 3.8e-10 2.7e-08 25.6 0.0 10 63 310 376 307 519 0.79 # 20878 # 22494 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_45 - 242 DUF258 PF03193.11 161 0.00081 11.1 0.0 1 1 1.7e-05 0.0012 10.5 0.0 18 64 17 64 5 72 0.79 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_40 - 193 AAA_31 PF13614.1 157 7.7e-12 37.9 0.0 1 2 1.6e-10 3.8e-09 29.1 0.0 2 43 2 43 1 50 0.93 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 1_40 - 193 AAA_31 PF13614.1 157 7.7e-12 37.9 0.0 2 2 0.0012 0.028 6.8 0.0 119 155 77 112 60 114 0.85 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 196 AAA_31 PF13614.1 157 8e-09 28.1 0.0 1 2 1.6e-07 3.9e-06 19.4 0.0 6 43 6 43 1 55 0.85 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 196 AAA_31 PF13614.1 157 8e-09 28.1 0.0 2 2 0.0012 0.028 6.8 0.0 119 155 80 115 75 117 0.88 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 195 AAA_31 PF13614.1 157 0.00013 14.3 0.0 1 2 0.00098 0.024 7.0 0.0 3 39 3 39 2 52 0.81 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 2_16 - 195 AAA_31 PF13614.1 157 0.00013 14.3 0.0 2 2 0.005 0.12 4.7 0.0 122 155 80 112 78 114 0.88 # 16761 # 17345 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.530 2_22 - 539 Methyltransf_26 PF13659.1 117 3e-07 23.0 0.0 1 1 1.2e-08 8.6e-07 21.5 0.0 3 83 362 493 360 522 0.68 # 20878 # 22494 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_36 - 1187 AAA_30 PF13604.1 196 5e-59 191.6 10.0 1 1 5.5e-60 2e-58 189.6 10.0 1 195 446 648 446 649 0.96 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_3 - 1155 AAA_30 PF13604.1 196 2.4e-57 186.1 7.6 1 1 6.7e-59 2.4e-57 186.1 7.6 1 195 469 671 469 672 0.96 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_45 - 242 ABC_tran PF00005.22 137 1.6e-26 85.7 0.0 1 1 6.4e-28 2.3e-26 85.2 0.0 1 137 25 162 25 162 0.90 # 44255 # 44980 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.492 1_32 - 690 ABC_tran PF00005.22 137 2.2e-05 17.2 0.0 1 1 2.2e-06 8.1e-05 15.4 0.0 4 44 32 72 29 98 0.88 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 2_3 - 1155 AAA_19 PF13245.1 76 4.6e-10 31.7 4.5 1 2 2.5e-09 6.2e-08 24.8 1.5 13 75 489 545 476 546 0.80 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_3 - 1155 AAA_19 PF13245.1 76 4.6e-10 31.7 4.5 2 2 0.0016 0.038 6.3 0.1 16 61 664 709 653 735 0.71 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 1187 AAA_19 PF13245.1 76 1.1e-09 30.4 6.0 1 2 3.5e-09 8.6e-08 24.4 4.0 4 73 459 520 453 523 0.71 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_36 - 1187 AAA_19 PF13245.1 76 1.1e-09 30.4 6.0 2 2 0.007 0.17 4.2 0.0 26 62 652 687 631 702 0.75 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_6 - 196 AAA_19 PF13245.1 76 0.00011 14.5 2.0 1 2 0.00011 0.0028 9.9 0.1 13 48 4 35 3 54 0.84 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 196 AAA_19 PF13245.1 76 0.00011 14.5 2.0 2 2 0.012 0.28 3.5 0.3 10 23 79 92 71 137 0.70 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 196 NAD_binding_10 PF13460.1 183 6.9e-05 15.4 1.3 1 2 0.00053 0.038 6.4 0.2 13 29 20 36 5 62 0.74 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 196 NAD_binding_10 PF13460.1 183 6.9e-05 15.4 1.3 2 2 0.00013 0.0097 8.4 0.1 33 107 70 145 47 162 0.81 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 196 AAA_10 PF12846.2 304 3.8e-05 15.6 0.0 1 1 1.1e-06 4.1e-05 15.6 0.0 8 48 8 52 4 153 0.84 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_40 - 193 AAA_10 PF12846.2 304 0.00068 11.5 0.0 1 1 2.3e-05 0.00083 11.2 0.0 11 47 11 49 4 98 0.84 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_3 - 1155 AAA_11 PF13086.1 236 1.6e-07 23.6 8.2 1 3 0.0012 0.043 5.8 0.0 2 75 470 536 469 556 0.87 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_3 - 1155 AAA_11 PF13086.1 236 1.6e-07 23.6 8.2 2 3 1.9e-07 6.8e-06 18.2 0.2 194 231 567 607 562 610 0.85 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 2_3 - 1155 AAA_11 PF13086.1 236 1.6e-07 23.6 8.2 3 3 0.033 1.2 1.0 1.7 100 155 958 1031 932 1047 0.56 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 1187 AAA_11 PF13086.1 236 3.9e-06 19.0 8.4 1 2 0.0009 0.033 6.2 0.0 3 75 448 513 446 539 0.83 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_36 - 1187 AAA_11 PF13086.1 236 3.9e-06 19.0 8.4 2 2 4.9e-07 1.8e-05 16.8 0.1 194 231 544 584 535 587 0.81 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_40 - 193 ArgK PF03308.11 267 0.00012 13.3 0.0 1 1 4.5e-06 0.00017 12.9 0.0 32 69 3 41 1 47 0.84 # 40494 # 41072 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 2_6 - 196 ArgK PF03308.11 267 0.00024 12.3 0.1 1 1 1.2e-05 0.00043 11.5 0.1 38 67 10 39 3 44 0.89 # 7248 # 7835 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_36 - 1187 PIF1 PF05970.9 364 2.6e-06 19.0 0.1 1 1 1.2e-07 4.5e-06 18.2 0.1 2 116 447 556 446 602 0.86 # 33080 # 36640 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_3 - 1155 PIF1 PF05970.9 364 3.8e-05 15.1 0.0 1 1 2.5e-06 9.1e-05 13.9 0.0 25 116 489 579 469 640 0.82 # 2541 # 6005 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_32 - 690 NACHT PF05729.7 166 5.7e-05 15.3 1.4 1 1 2.5e-05 0.0018 10.4 0.6 5 95 44 178 41 212 0.78 # 29859 # 31928 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/62241737-be8c-468c-8917-8d8fff15f75a # Target file: checkm_output/bins/pGCA_000011305.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000011305.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/62241737-be8c-468c-8917-8d8fff15f75a checkm_output/bins/pGCA_000011305.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:45 2020 # [ok]