# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 427 Terminase_6 PF03237.10 384 4.4e-37 120.1 0.2 1 1 7.3e-39 5.2e-37 119.8 0.2 4 382 31 414 28 416 0.83 # 13879 # 15159 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_7 - 201 SSB PF00436.20 104 1.1e-20 65.9 0.2 1 1 1.1e-21 8e-20 63.1 0.2 4 101 6 115 3 118 0.90 # 2556 # 3158 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_71 - 423 AAA_22 PF13401.1 131 1.2e-05 17.9 0.1 1 1 9.4e-07 6.7e-05 15.5 0.0 3 122 183 339 181 346 0.62 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 KaiC PF06745.8 227 2.8e-07 22.2 0.3 1 1 1.7e-08 1.2e-06 20.2 0.3 1 127 167 306 167 357 0.63 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 DnaB_C PF03796.10 259 1.5e-80 262.2 0.2 1 1 2.6e-82 1.8e-80 261.9 0.2 1 257 166 419 166 421 0.98 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 FtsK_SpoIIIE PF01580.13 205 0.00039 12.3 0.1 1 1 1.5e-05 0.0011 10.9 0.0 28 67 174 213 164 221 0.84 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 ATP-synt_ab PF00006.20 215 7.2e-05 14.7 0.0 1 1 1.5e-06 0.0001 14.2 0.0 1 44 169 214 169 358 0.76 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 AAA_19 PF13245.1 76 0.00035 12.8 0.0 1 1 1.5e-05 0.001 11.3 0.0 7 31 181 205 176 237 0.86 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_53 - 112 SbcCD_C PF13558.1 90 0.00015 14.2 0.0 1 1 3.3e-06 0.00024 13.5 0.0 40 80 58 97 33 99 0.87 # 36100 # 36435 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_71 - 423 TIP49 PF06068.8 398 3.5e-05 15.0 0.0 1 1 8.8e-07 6.2e-05 14.2 0.0 49 100 183 230 170 239 0.79 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 DEAD PF00270.24 169 0.00066 11.6 0.3 1 1 3.8e-05 0.0027 9.6 0.3 11 138 181 313 175 340 0.53 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_32 - 427 Terminase_3 PF04466.8 387 4.1e-21 67.8 0.0 1 1 1.2e-21 8.3e-20 63.5 0.0 4 385 26 413 24 415 0.76 # 13879 # 15159 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_71 - 423 NACHT PF05729.7 166 0.00034 12.7 0.0 1 2 0.041 2.9 -0.1 0.0 70 99 116 157 87 165 0.74 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 NACHT PF05729.7 166 0.00034 12.7 0.0 2 2 3.2e-05 0.0023 10.0 0.0 2 51 186 232 185 275 0.72 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 1_71 - 423 AAA_25 PF13481.1 194 3.3e-17 54.9 0.1 1 1 8.2e-19 5.8e-17 54.1 0.1 14 193 166 346 156 347 0.87 # 47792 # 49060 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.538 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fb9d9bbd-8899-4b7c-a13c-44689b18586b # Target file: checkm_output/bins/pGCA_000010225.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000010225.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fb9d9bbd-8899-4b7c-a13c-44689b18586b checkm_output/bins/pGCA_000010225.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:43 2020 # [ok]