# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_1 - 245 RrnaAD PF00398.15 262 5e-75 242.0 4.2 1 1 3.9e-76 5.5e-75 241.8 4.2 1 262 1 244 1 244 0.97 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_18 PF12847.2 112 1.4e-08 25.5 0.0 1 1 1.4e-09 2e-08 25.0 0.0 3 66 32 91 30 151 0.76 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_11 PF08241.7 95 1.5e-06 18.8 0.0 1 1 2.1e-07 3e-06 17.9 0.0 2 60 36 94 35 99 0.91 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_25 PF13649.1 101 6.1e-05 13.6 0.0 1 1 9.3e-06 0.00013 12.5 0.0 1 69 34 96 34 121 0.83 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 PCMT PF01135.14 210 1.8e-06 17.7 0.0 1 1 3.8e-07 5.3e-06 16.2 0.0 53 126 10 80 3 86 0.86 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 MTS PF05175.9 170 1.2e-05 14.8 0.0 1 1 1.3e-06 1.9e-05 14.2 0.0 25 113 24 109 14 125 0.83 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 3_2 - 335 Ribosomal_L11 PF00298.14 69 9.8e-05 12.7 1.5 1 1 2.1e-05 0.0003 11.1 0.1 16 43 23 51 17 62 0.91 # 719 # 1723 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.300 2_1 - 245 NodS PF05401.6 201 4.4e-06 16.3 0.0 1 1 5e-07 7e-06 15.6 0.0 44 107 31 94 9 115 0.84 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_31 PF13847.1 152 9.3e-06 15.4 3.1 1 1 1.1e-06 1.6e-05 14.7 3.0 2 76 29 98 28 225 0.74 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 1_1 - 173 RRF PF01765.14 165 0.0002 11.0 7.4 1 1 1.9e-05 0.00026 10.6 7.4 83 164 2 85 1 86 0.81 # 204 # 722 # -1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 2_1 - 245 DOT1 PF08123.8 205 8.3e-06 15.3 1.3 1 2 3.5e-06 4.9e-05 12.8 0.0 29 91 17 77 13 116 0.83 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 DOT1 PF08123.8 205 8.3e-06 15.3 1.3 2 2 0.016 0.22 0.9 0.6 78 133 180 229 169 236 0.57 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 TIGR00755 TIGR00755 256 2.7e-48 154.3 1.2 1 1 2.4e-49 3.4e-48 153.9 1.2 6 254 7 237 3 239 0.88 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_23 PF13489.1 161 6.8e-06 16.0 0.0 1 1 1.4e-06 1.9e-05 14.6 0.0 11 67 17 78 8 119 0.71 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_4 PF02390.12 197 1.1e-06 17.9 1.7 1 2 8.4e-08 1.2e-06 17.8 0.3 20 97 31 101 4 104 0.77 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 2_1 - 245 Methyltransf_4 PF02390.12 197 1.1e-06 17.9 1.7 2 2 0.093 1.3 -1.9 0.1 136 159 187 207 168 229 0.62 # 319 # 1053 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.257 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7b5b9439-fc67-4ec2-80e7-03a4031d6d37 # Target file: checkm_output/bins/pGCA_000009865.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009865.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7b5b9439-fc67-4ec2-80e7-03a4031d6d37 checkm_output/bins/pGCA_000009865.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:39 2020 # [ok]