# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_52 - 850 IstB_IS21 PF01695.12 178 0.00025 12.7 0.0 1 1 7.5e-06 0.00047 11.8 0.0 46 68 453 475 439 489 0.85 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_6 - 212 MipZ PF09140.6 261 8.2e-15 46.7 0.0 1 3 3.6e-09 2.2e-07 22.4 0.0 2 39 4 40 3 47 0.86 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 MipZ PF09140.6 261 8.2e-15 46.7 0.0 2 3 1.8e-07 1.1e-05 16.8 0.0 87 135 66 114 60 146 0.89 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 MipZ PF09140.6 261 8.2e-15 46.7 0.0 3 3 0.0015 0.092 4.0 0.0 212 245 170 203 142 209 0.85 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 YhjQ PF06564.7 244 5.5e-08 24.6 0.2 1 2 7e-05 0.0043 8.6 0.0 9 41 10 41 2 45 0.86 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 YhjQ PF06564.7 244 5.5e-08 24.6 0.2 2 2 1.5e-06 9e-05 14.1 0.0 101 232 63 203 58 208 0.81 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_40 - 1925 UvrD_C_2 PF13538.1 104 0.00033 13.1 0.3 1 1 5e-05 0.0031 9.9 0.1 4 103 1373 1473 1370 1474 0.63 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_52 - 850 DUF87 PF01935.12 229 2.4e-05 16.4 0.6 1 1 1.8e-06 5.6e-05 15.2 0.0 26 79 457 512 454 619 0.85 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 702 DUF87 PF01935.12 229 0.00023 13.2 1.3 1 1 1.3e-05 0.0004 12.5 0.0 24 50 199 224 189 234 0.83 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_40 - 1925 AAA_22 PF13401.1 131 1.8e-08 26.8 1.2 1 2 9.5e-05 0.002 10.5 0.1 45 121 460 569 431 571 0.82 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_40 - 1925 AAA_22 PF13401.1 131 1.8e-08 26.8 1.2 2 2 2e-05 0.00041 12.8 0.1 3 125 1031 1148 1028 1154 0.67 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_41 - 702 AAA_22 PF13401.1 131 0.00011 14.6 0.1 1 1 2.2e-05 0.00045 12.6 0.0 5 30 199 224 195 251 0.84 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_6 - 212 AAA_22 PF13401.1 131 0.0006 12.2 0.0 1 2 0.0012 0.025 7.0 0.0 14 55 13 48 5 106 0.80 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 AAA_22 PF13401.1 131 0.0006 12.2 0.0 2 2 0.019 0.39 3.1 0.0 19 68 115 167 115 193 0.74 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 AAA_17 PF13207.1 121 0.00035 13.7 0.0 1 1 2.5e-05 0.00077 12.5 0.0 9 94 13 104 12 176 0.74 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_52 - 850 AAA_17 PF13207.1 121 0.00044 13.3 0.0 1 1 4.2e-05 0.0013 11.8 0.0 2 22 457 477 456 613 0.82 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 702 MobB PF03205.9 140 0.00037 12.4 0.1 1 1 1.3e-05 0.00078 11.4 0.1 3 34 201 232 199 240 0.88 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_6 - 212 ArsA_ATPase PF02374.10 305 4.6e-05 14.8 0.1 1 1 1.7e-06 0.00011 13.5 0.1 7 49 9 50 4 102 0.82 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_41 - 702 T2SE PF00437.15 272 1.9e-05 15.9 0.0 1 1 5.8e-07 3.6e-05 15.0 0.0 129 160 199 231 160 233 0.85 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_6 - 212 Methyltransf_24 PF13578.1 106 4.1e-07 23.1 0.0 1 1 2.7e-08 1.7e-06 21.1 0.0 8 85 15 93 12 104 0.68 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 VirC1 PF07015.6 231 2.2e-10 32.2 0.0 1 1 5e-12 3.1e-10 31.7 0.0 3 197 4 191 2 208 0.79 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_41 - 702 AAA_16 PF13191.1 185 0.00032 12.9 0.1 1 1 2.5e-05 0.0016 10.7 0.0 25 57 199 232 188 378 0.86 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_6 - 212 AAA_18 PF13238.1 129 0.00032 13.3 0.0 1 1 9.2e-06 0.00057 12.4 0.0 8 80 13 85 11 100 0.83 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 CbiA PF01656.18 195 8.5e-26 82.8 0.1 1 1 6e-27 3.7e-25 80.7 0.1 1 148 5 134 5 178 0.76 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_52 - 850 AAA_29 PF13555.1 62 0.00011 14.0 0.0 1 1 4.4e-06 0.00027 12.7 0.0 21 49 452 480 443 486 0.78 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 702 TraG-D_C PF12696.2 128 6.9e-23 73.2 0.0 1 1 2.7e-24 1.7e-22 71.9 0.0 1 127 437 559 437 560 0.87 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_6 - 212 AAA_31 PF13614.1 157 9e-12 37.4 0.0 1 2 2.1e-11 1.3e-09 30.4 0.0 1 41 3 42 3 50 0.92 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 AAA_31 PF13614.1 157 9e-12 37.4 0.0 2 2 0.0014 0.088 5.0 0.0 111 154 71 113 64 116 0.84 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_40 - 1925 AAA_30 PF13604.1 196 1e-56 183.8 8.2 1 2 1.2e-10 3.7e-09 28.7 0.3 6 127 443 570 439 577 0.81 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_40 - 1925 AAA_30 PF13604.1 196 1e-56 183.8 8.2 2 2 4.8e-50 1.5e-48 157.2 2.8 1 189 1015 1208 1015 1215 0.94 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_52 - 850 AAA_30 PF13604.1 196 0.00011 14.0 0.0 1 1 7.6e-06 0.00023 13.0 0.0 15 52 451 488 439 512 0.87 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 702 FtsK_SpoIIIE PF01580.13 205 2.1e-05 16.3 0.0 1 1 8.2e-07 5.1e-05 15.0 0.0 17 59 178 219 163 223 0.68 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_52 - 850 ABC_tran PF00005.22 137 1.4e-05 17.7 0.0 1 1 5.5e-07 3.4e-05 16.4 0.0 11 77 454 520 449 612 0.83 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_40 - 1925 AAA_19 PF13245.1 76 5.1e-08 24.9 3.4 1 2 0.013 0.8 1.8 0.1 29 74 616 660 615 662 0.83 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_40 - 1925 AAA_19 PF13245.1 76 5.1e-08 24.9 3.4 2 2 1.2e-08 7.7e-07 21.1 0.1 8 76 1029 1097 1022 1097 0.82 # 21032 # 26806 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_52 - 850 AAA_10 PF12846.2 304 9.7e-46 148.7 0.0 1 1 7.7e-47 1.6e-45 148.0 0.0 1 296 454 751 454 755 0.86 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 702 AAA_10 PF12846.2 304 3.5e-14 45.1 0.0 1 1 4e-14 8.3e-13 40.6 0.0 3 296 200 511 199 519 0.67 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_6 - 212 AAA_10 PF12846.2 304 0.00046 11.9 0.0 1 1 3.1e-05 0.00065 11.4 0.0 11 54 13 57 11 151 0.83 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_41 - 702 TrwB_AAD_bind PF10412.4 386 7.3e-155 507.5 0.0 1 1 3.1e-156 9.6e-155 507.1 0.0 2 385 184 578 183 579 0.98 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_52 - 850 TrwB_AAD_bind PF10412.4 386 3.3e-08 24.7 0.0 1 2 9.3e-08 2.9e-06 18.3 0.0 12 71 451 516 446 521 0.81 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_52 - 850 TrwB_AAD_bind PF10412.4 386 3.3e-08 24.7 0.0 2 2 0.0022 0.07 3.9 0.0 261 311 697 744 650 767 0.90 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 702 T4SS-DNA_transf PF02534.9 469 2.1e-18 58.3 0.0 1 1 1.1e-18 6.8e-17 53.3 0.0 98 426 249 560 143 573 0.77 # 26940 # 29045 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_52 - 850 ArgK PF03308.11 267 0.00052 11.0 0.1 1 1 2.6e-05 0.0016 9.4 0.0 29 63 454 488 445 513 0.88 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_6 - 212 AAA_24 PF13479.1 213 3.7e-09 28.7 0.0 1 1 1.1e-10 6.5e-09 27.9 0.0 5 86 5 95 2 100 0.84 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_6 - 212 AAA_25 PF13481.1 194 0.0002 13.0 0.1 1 1 3.1e-05 0.00096 10.8 0.1 41 154 11 89 4 96 0.73 # 3104 # 3739 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_52 - 850 AAA_25 PF13481.1 194 0.00062 11.4 0.0 1 2 0.00017 0.0054 8.3 0.0 36 58 457 479 452 551 0.79 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_52 - 850 AAA_25 PF13481.1 194 0.00062 11.4 0.0 2 2 0.09 2.8 -0.5 0.0 160 186 688 714 669 716 0.79 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 1_52 - 850 AAA_28 PF13521.1 163 0.00039 12.6 0.8 1 1 2.4e-05 0.0015 10.7 0.1 1 23 456 483 456 509 0.77 # 39872 # 42421 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.486 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3d39bd1a-98a8-4c9c-9f06-86dc1c42d652 # Target file: checkm_output/bins/pGCA_000009745.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009745.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3d39bd1a-98a8-4c9c-9f06-86dc1c42d652 checkm_output/bins/pGCA_000009745.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:39 2020 # [ok]