# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_1 - 225 AAA_17 PF13207.1 121 1.7e-06 20.2 1.5 1 1 2.6e-07 2.6e-06 19.5 1.5 23 113 24 122 20 220 0.86 # 61 # 735 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_4 - 225 AAA_17 PF13207.1 121 2.7e-05 16.3 1.0 1 1 3.8e-06 3.9e-05 15.7 1.0 23 113 24 122 20 206 0.83 # 4160 # 4834 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_3 - 222 AAA_17 PF13207.1 121 0.00014 14.0 0.9 1 1 2.2e-05 0.00023 13.3 0.9 23 112 24 121 20 177 0.80 # 2964 # 3629 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1953e855-a236-4fb4-9961-f7f68a2bd5b9 # Target file: checkm_output/bins/pGCA_000009665.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009665.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1953e855-a236-4fb4-9961-f7f68a2bd5b9 checkm_output/bins/pGCA_000009665.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:34 2020 # [ok]