# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 209 FeoB_N PF02421.13 156 8.8e-05 13.0 4.1 1 3 4.4e-05 0.0013 9.2 0.0 3 24 30 51 28 56 0.89 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 FeoB_N PF02421.13 156 8.8e-05 13.0 4.1 2 3 0.095 2.8 -1.6 0.0 94 133 94 131 84 146 0.57 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 FeoB_N PF02421.13 156 8.8e-05 13.0 4.1 3 3 0.0016 0.049 4.1 1.0 86 131 162 207 131 208 0.77 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_9 - 324 NmrA PF05368.8 233 2.7e-06 17.9 0.7 1 1 2.1e-07 6.2e-06 16.8 0.7 1 52 152 205 152 275 0.90 # 5882 # 6853 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_16 - 253 AAA_22 PF13401.1 131 8.1e-13 39.9 0.2 1 1 2.5e-13 3.7e-12 37.7 0.2 2 59 25 99 24 152 0.75 # 13265 # 14023 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_23 - 209 AAA_22 PF13401.1 131 1.2e-06 19.9 1.0 1 1 2.7e-07 4.1e-06 18.2 1.0 4 129 27 195 24 197 0.73 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_15 PF13175.1 415 6.6e-09 26.4 8.7 1 2 4.7e-06 0.00014 12.1 6.6 8 110 12 106 4 123 0.60 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_15 PF13175.1 415 6.6e-09 26.4 8.7 2 2 4.6e-07 1.4e-05 15.4 2.8 291 414 87 193 62 194 0.67 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_17 PF13207.1 121 8.5e-06 17.9 0.2 1 1 8e-07 2.4e-05 16.4 0.2 3 56 31 86 30 207 0.73 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_21 PF13304.1 303 7.3e-17 53.4 5.1 1 1 7.2e-16 2.2e-14 45.3 5.1 3 301 31 193 29 195 0.88 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_9 - 324 ADH_zinc_N PF00107.21 130 4.9e-17 52.9 0.0 1 1 3.7e-18 1.1e-16 51.8 0.0 1 117 160 270 160 285 0.90 # 5882 # 6853 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_23 - 209 Zeta_toxin PF06414.7 201 4e-05 14.0 0.0 1 1 1.9e-06 5.8e-05 13.4 0.0 14 62 25 74 15 96 0.82 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 SMC_N PF02463.14 220 9.8e-08 22.6 6.2 1 1 1.2e-08 3.6e-07 20.8 6.2 19 213 21 205 4 208 0.75 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_16 PF13191.1 185 5.3e-05 14.5 0.4 1 1 3e-06 8.9e-05 13.7 0.4 24 42 27 45 17 198 0.82 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_23 PF13476.1 202 0.00011 13.8 9.5 1 1 2.1e-05 0.00063 11.3 9.5 10 131 17 138 9 198 0.58 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_18 PF13238.1 129 0.00031 12.3 4.4 1 1 5.4e-05 0.0016 10.0 4.4 3 64 32 120 31 203 0.63 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_13 PF13166.1 712 1.1e-07 21.9 3.1 1 2 0.00016 0.0047 6.5 1.0 23 75 34 83 13 119 0.63 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_13 PF13166.1 712 1.1e-07 21.9 3.1 2 2 2.9e-07 8.7e-06 15.5 0.3 500 578 131 198 99 205 0.82 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 AAA_29 PF13555.1 62 1.1e-07 22.6 0.1 1 1 6.5e-09 2e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 MMR_HSR1 PF01926.18 116 3e-06 18.5 2.4 1 1 2.3e-07 6.8e-06 17.3 2.4 3 100 31 142 29 204 0.63 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 DUF258 PF03193.11 161 2e-09 28.1 0.1 1 1 1e-10 3.1e-09 27.4 0.1 13 67 4 59 1 70 0.87 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 NTPase_1 PF03266.10 168 7.7e-05 13.6 0.4 1 2 0.0012 0.036 5.0 0.0 3 19 31 47 29 57 0.86 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 NTPase_1 PF03266.10 168 7.7e-05 13.6 0.4 2 2 0.00029 0.0086 7.0 0.2 74 136 128 192 104 207 0.74 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 Dynamin_N PF00350.18 168 7.9e-05 13.7 2.5 1 1 8e-06 0.00024 12.2 2.5 2 30 31 59 31 196 0.69 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 ABC_tran PF00005.22 137 2.9e-37 119.2 0.1 1 1 1.3e-38 4e-37 118.8 0.1 1 136 17 159 17 160 0.93 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 253 RuvB_N PF05496.7 234 9.1e-05 12.7 0.2 1 2 0.023 0.69 0.0 0.0 55 65 32 42 28 51 0.86 # 13265 # 14023 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_16 - 253 RuvB_N PF05496.7 234 9.1e-05 12.7 0.2 2 2 1.9e-05 0.00058 10.1 0.1 79 136 86 145 66 178 0.89 # 13265 # 14023 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_9 - 324 NAD_binding_10 PF13460.1 183 2.5e-05 15.5 0.1 1 1 1.2e-06 3.5e-05 15.0 0.1 1 38 152 192 152 240 0.88 # 5882 # 6853 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_23 - 209 AAA_10 PF12846.2 304 4.9e-05 14.0 0.2 1 1 3e-06 9.1e-05 13.1 0.1 3 22 29 48 27 63 0.81 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_23 - 209 SbcCD_C PF13558.1 90 6.8e-06 17.2 0.0 1 1 3e-06 9.1e-05 13.6 0.0 11 88 110 174 102 176 0.81 # 19109 # 19735 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_9 - 324 Epimerase PF01370.16 236 0.0001 12.9 0.0 1 1 5.3e-06 0.00016 12.3 0.0 1 39 152 191 152 216 0.80 # 5882 # 6853 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_9 - 324 DapB_N PF01113.15 124 1.5e-06 19.4 0.2 1 2 0.042 1.3 0.2 0.0 92 103 121 132 115 142 0.84 # 5882 # 6853 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_9 - 324 DapB_N PF01113.15 124 1.5e-06 19.4 0.2 2 2 5.1e-07 1.5e-05 16.1 0.2 3 97 152 242 150 250 0.78 # 5882 # 6853 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8a003dde-8d86-46ab-80a7-170fb11592a1 # Target file: checkm_output/bins/pGCA_000009645.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009645.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8a003dde-8d86-46ab-80a7-170fb11592a1 checkm_output/bins/pGCA_000009645.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:34 2020 # [ok]