# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 218 UPF0020 PF01170.13 180 1.1e-08 27.8 0.0 1 2 8.4e-06 0.00087 11.8 0.0 102 121 16 35 7 73 0.73 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 UPF0020 PF01170.13 180 1.1e-08 27.8 0.0 2 2 1.9e-06 0.0002 13.9 0.0 24 80 159 204 149 212 0.81 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_104 - 221 MipZ PF09140.6 261 2.3e-05 16.5 0.2 1 1 3.7e-07 3.8e-05 15.8 0.2 5 45 2 42 1 112 0.85 # 91982 # 92644 # -1 # ID=1_104;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_24 - 218 Methyltransf_18 PF12847.2 112 7e-05 16.4 0.1 1 1 1.9e-06 0.0002 14.9 0.0 2 45 164 205 163 215 0.87 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 UvrD_C_2 PF13538.1 104 3.5e-08 26.5 1.5 1 1 1.1e-09 1.1e-07 24.9 0.3 4 104 784 899 768 899 0.63 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_38 - 640 DUF87 PF01935.12 229 0.0011 11.8 0.0 1 1 4.2e-05 0.0043 9.8 0.0 23 81 184 238 178 361 0.76 # 27590 # 29509 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_40 - 940 AAA_22 PF13401.1 131 4.6e-08 26.2 0.0 1 1 1.4e-09 1.5e-07 24.6 0.0 3 127 442 565 439 568 0.78 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_24 - 218 Methyltransf_11 PF08241.7 95 0.00038 13.9 0.0 1 2 0.0024 0.25 4.9 0.0 78 94 53 69 45 70 0.88 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 Methyltransf_11 PF08241.7 95 0.00038 13.9 0.0 2 2 0.00077 0.08 6.5 0.0 5 41 172 207 168 215 0.87 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 N6_N4_Mtase PF01555.13 231 2.9e-35 114.7 0.0 1 2 3.2e-11 3.3e-09 29.5 0.0 1 114 21 124 21 140 0.85 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 N6_N4_Mtase PF01555.13 231 2.9e-35 114.7 0.0 2 2 9e-28 9.3e-26 83.6 0.0 170 230 142 202 132 203 0.93 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 AAA_17 PF13207.1 121 8.5e-06 19.6 0.0 1 1 1.2e-05 0.00061 13.6 0.0 2 97 446 560 445 633 0.62 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_86 - 471 AAA_17 PF13207.1 121 0.00018 15.3 0.0 1 1 1.4e-05 0.00072 13.4 0.0 5 78 37 158 33 242 0.60 # 67788 # 69200 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_95 - 301 Ribosomal_L35p PF01632.14 61 0.00027 13.8 1.3 1 1 6.4e-06 0.00067 12.6 1.3 16 44 196 224 193 230 0.86 # 78676 # 79578 # 1 # ID=1_95;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.701 1_86 - 471 Zeta_toxin PF06414.7 201 1.9e-57 186.6 0.5 1 1 3.1e-59 3.3e-57 185.8 0.5 10 198 25 213 16 216 0.96 # 67788 # 69200 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_104 - 221 VirC1 PF07015.6 231 3e-07 22.7 0.1 1 1 8.8e-09 9.1e-07 21.1 0.1 7 189 3 184 1 215 0.75 # 91982 # 92644 # -1 # ID=1_104;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_40 - 940 AAA_16 PF13191.1 185 0.00027 13.9 2.6 1 1 3.4e-06 0.00035 13.5 0.1 25 64 444 482 430 564 0.74 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_40 - 940 AAA_18 PF13238.1 129 4.7e-05 16.7 0.0 1 1 3.9e-06 0.0002 14.6 0.0 1 79 446 532 446 540 0.72 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_86 - 471 AAA_18 PF13238.1 129 0.00015 15.1 0.0 1 1 7.7e-06 0.0004 13.7 0.0 1 87 34 124 34 141 0.80 # 67788 # 69200 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_104 - 221 CbiA PF01656.18 195 1.2e-16 53.7 0.0 1 1 1.7e-18 1.8e-16 53.1 0.0 3 191 2 175 1 178 0.82 # 91982 # 92644 # -1 # ID=1_104;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_38 - 640 TraG-D_C PF12696.2 128 1.9e-24 79.0 0.0 1 1 2.9e-26 3e-24 78.3 0.0 1 127 411 533 411 534 0.89 # 27590 # 29509 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_104 - 221 AAA_31 PF13614.1 157 2.5e-05 17.2 0.3 1 2 0.00033 0.034 7.0 0.1 9 40 6 37 4 42 0.90 # 91982 # 92644 # -1 # ID=1_104;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_104 - 221 AAA_31 PF13614.1 157 2.5e-05 17.2 0.3 2 2 0.00015 0.015 8.1 0.0 113 152 71 109 66 114 0.85 # 91982 # 92644 # -1 # ID=1_104;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_40 - 940 NTPase_1 PF03266.10 168 0.0016 11.1 2.2 1 1 3e-05 0.0031 10.2 0.0 2 34 446 478 445 534 0.90 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_86 - 471 AAA_33 PF13671.1 143 6.8e-11 35.2 1.5 1 1 2.6e-12 1.4e-10 34.2 0.1 2 137 34 177 33 182 0.78 # 67788 # 69200 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_40 - 940 AAA_33 PF13671.1 143 0.0021 10.9 0.1 1 1 4e-05 0.0021 10.9 0.1 2 99 446 556 445 560 0.61 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_24 - 218 Methyltransf_26 PF13659.1 117 2.3e-17 56.1 1.1 1 2 4e-09 4.1e-07 23.0 0.0 57 114 7 71 4 74 0.76 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 Methyltransf_26 PF13659.1 117 2.3e-17 56.1 1.1 2 2 1.1e-11 1.1e-09 31.3 0.3 1 45 164 207 164 216 0.88 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 AAA_30 PF13604.1 196 4.8e-51 166.1 5.9 1 1 1.3e-52 1.4e-50 164.6 5.9 3 178 428 610 426 643 0.89 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_98 - 239 RecA PF00154.16 323 0.00014 13.9 0.0 1 1 1.7e-06 0.00018 13.6 0.0 28 131 23 125 14 137 0.81 # 83174 # 83890 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.717 1_24 - 218 Met_10 PF02475.11 200 9.7e-05 15.0 0.0 1 1 1.4e-06 0.00015 14.4 0.0 94 137 156 197 148 205 0.81 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 ABC_tran PF00005.22 137 3.7e-06 20.3 0.2 1 2 2.3e-06 0.00024 14.4 0.0 10 67 442 518 437 556 0.59 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_40 - 940 ABC_tran PF00005.22 137 3.7e-06 20.3 0.2 2 2 0.024 2.5 1.4 0.1 36 76 603 644 575 707 0.67 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_24 - 218 Cons_hypoth95 PF03602.10 183 8.3e-05 15.0 0.0 1 2 0.00033 0.034 6.5 0.0 100 127 8 33 3 77 0.78 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 Cons_hypoth95 PF03602.10 183 8.3e-05 15.0 0.0 2 2 0.00029 0.03 6.7 0.0 42 59 163 180 141 206 0.81 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 AAA_19 PF13245.1 76 4.5e-10 32.2 0.3 1 1 2e-11 2e-09 30.1 0.3 2 71 434 497 433 518 0.83 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_58 - 869 AAA_10 PF12846.2 304 9.3e-57 185.6 0.0 1 1 3.7e-58 1.3e-56 185.2 0.0 1 295 490 780 490 790 0.89 # 45718 # 48324 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 1_38 - 640 AAA_10 PF12846.2 304 1.6e-12 40.4 0.1 1 1 1.3e-13 4.4e-12 38.9 0.1 3 303 186 493 184 494 0.83 # 27590 # 29509 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_86 - 471 AAA_10 PF12846.2 304 0.0033 9.8 2.2 1 1 0.00032 0.011 8.1 2.0 5 117 35 219 33 335 0.55 # 67788 # 69200 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_24 - 218 Methyltransf_31 PF13847.1 152 6.5e-05 15.5 0.0 1 2 0.00094 0.098 5.2 0.0 66 114 13 76 4 110 0.69 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 Methyltransf_31 PF13847.1 152 6.5e-05 15.5 0.0 2 2 9.2e-05 0.0095 8.5 0.0 3 47 163 204 161 207 0.84 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 Viral_helicase1 PF01443.13 234 6.5e-08 25.3 1.6 1 2 4.5e-07 4.7e-05 15.9 0.1 3 105 448 570 446 589 0.73 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_40 - 940 Viral_helicase1 PF01443.13 234 6.5e-08 25.3 1.6 2 2 0.00021 0.022 7.2 0.2 165 233 818 899 779 900 0.65 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_91 - 271 Methyltransf_21 PF05050.7 167 9.2e-05 15.4 0.4 1 1 2.3e-06 0.00024 14.1 0.4 112 148 167 203 52 225 0.81 # 71618 # 72430 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.624 1_38 - 640 TrwB_AAD_bind PF10412.4 386 1.7e-132 434.6 0.0 1 1 3.9e-134 2.1e-132 434.3 0.0 2 385 171 552 170 553 0.99 # 27590 # 29509 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_58 - 869 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.1 0.0 1 2 1.7e-06 9e-05 14.1 0.0 14 55 489 530 477 555 0.85 # 45718 # 48324 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 1_58 - 869 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.1 0.0 2 2 0.0057 0.29 2.5 0.0 261 320 726 782 708 804 0.87 # 45718 # 48324 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.600 1_40 - 940 AAA_11 PF13086.1 236 0.00051 12.6 1.8 1 2 4e-05 0.0041 9.6 0.0 5 37 430 463 426 517 0.75 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_40 - 940 AAA_11 PF13086.1 236 0.00051 12.6 1.8 2 2 0.02 2.1 0.8 0.0 189 230 522 566 513 569 0.75 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_38 - 640 T4SS-DNA_transf PF02534.9 469 3.5e-21 68.2 0.0 1 2 0.0018 0.18 3.2 0.0 3 86 142 228 140 308 0.69 # 27590 # 29509 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_38 - 640 T4SS-DNA_transf PF02534.9 469 3.5e-21 68.2 0.0 2 2 1.4e-21 1.5e-19 62.8 0.0 252 441 360 549 294 569 0.85 # 27590 # 29509 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_24 - 218 MethyltransfD12 PF02086.10 260 0.0015 10.9 0.0 1 2 0.082 8.6 -1.4 0.0 183 189 26 32 16 50 0.66 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 MethyltransfD12 PF02086.10 260 0.0015 10.9 0.0 2 2 4.9e-05 0.0051 9.2 0.0 20 46 163 189 149 203 0.79 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 PIF1 PF05970.9 364 3.7e-08 25.6 0.1 1 1 9.5e-10 9.9e-08 24.2 0.1 18 126 439 549 431 568 0.81 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_100 - 1050 tRNA_anti-codon PF01336.20 75 1.1e-07 24.6 0.0 1 1 2.6e-09 2.7e-07 23.4 0.0 4 61 962 1021 947 1033 0.82 # 85296 # 88445 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.668 1_40 - 940 NACHT PF05729.7 166 0.00035 13.2 0.0 1 1 8e-06 0.00084 12.0 0.0 1 26 444 469 444 474 0.86 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_24 - 218 Methyltransf_15 PF09445.5 164 6e-05 15.6 0.0 1 2 0.028 2.9 0.4 0.0 55 79 6 29 3 33 0.88 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_24 - 218 Methyltransf_15 PF09445.5 164 6e-05 15.6 0.0 2 2 4.7e-06 0.00048 12.6 0.0 3 38 166 201 164 206 0.89 # 18055 # 18708 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_40 - 940 AAA_28 PF13521.1 163 0.00019 14.3 0.1 1 1 9.4e-06 0.00098 12.1 0.1 2 82 446 535 445 551 0.71 # 30109 # 32928 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/85fd63f4-d379-46e0-9c01-36e96d76bdd2 # Target file: checkm_output/bins/pGCA_000009485.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000009485.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/85fd63f4-d379-46e0-9c01-36e96d76bdd2 checkm_output/bins/pGCA_000009485.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:37 2020 # [ok]