# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_17 - 831 Mg_chelatase PF01078.16 207 0.0004 13.1 0.0 1 1 5.7e-06 0.00088 12.0 0.0 11 46 452 487 449 513 0.88 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 14_1 - 246 Methyltransf_32 PF13679.1 141 2.4e-05 17.6 0.0 1 1 2.6e-07 4.1e-05 16.8 0.0 12 69 17 67 9 98 0.82 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 9_3 - 613 UPF0020 PF01170.13 180 5.5e-07 22.8 0.0 1 1 9.2e-09 1.4e-06 21.5 0.0 104 155 259 309 215 333 0.82 # 1851 # 3689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_2 - 701 cobW PF02492.14 178 0.00024 14.1 0.7 1 1 3.6e-06 0.00056 12.9 0.1 5 45 518 557 515 567 0.79 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 14_1 - 246 RrnaAD PF00398.15 262 1.8e-73 240.3 6.8 1 1 1.3e-75 2e-73 240.1 6.8 3 261 2 242 1 243 0.96 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_26 - 82 Seryl_tRNA_N PF02403.17 108 0.0015 12.1 8.7 1 1 1.9e-05 0.0029 11.2 8.7 62 103 9 54 3 59 0.80 # 22739 # 22984 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 6_1 - 282 MipZ PF09140.6 261 1.9e-14 46.8 0.0 1 2 1.3e-12 6.9e-11 35.2 0.0 2 72 4 73 3 96 0.86 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 6_1 - 282 MipZ PF09140.6 261 1.9e-14 46.8 0.0 2 2 7.1e-05 0.0037 9.9 0.0 65 126 100 160 78 170 0.75 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 3_12 - 261 MipZ PF09140.6 261 2e-13 43.5 0.3 1 2 3.3e-07 1.7e-05 17.5 0.0 2 43 4 46 3 58 0.86 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 3_12 - 261 MipZ PF09140.6 261 2e-13 43.5 0.3 2 2 2.4e-09 1.3e-07 24.5 0.0 58 150 80 169 61 215 0.82 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 4_2 - 274 MipZ PF09140.6 261 3e-07 23.3 0.2 1 2 5.5e-06 0.00029 13.5 0.1 2 41 4 44 3 58 0.81 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 4_2 - 274 MipZ PF09140.6 261 3e-07 23.3 0.2 2 2 0.00032 0.017 7.7 0.0 70 127 95 153 75 163 0.79 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 3_12 - 261 YhjQ PF06564.7 244 5.6e-10 32.5 0.0 1 1 1.7e-11 8.7e-10 31.8 0.0 7 149 8 149 2 163 0.81 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 282 YhjQ PF06564.7 244 7.4e-09 28.8 0.0 1 1 2.3e-10 1.2e-08 28.1 0.0 6 150 7 165 2 169 0.71 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 4_2 - 274 YhjQ PF06564.7 244 1.5e-08 27.8 0.0 1 1 4.8e-10 2.5e-08 27.1 0.0 8 150 9 157 2 172 0.81 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 2_16 - 153 SSB PF00436.20 104 2.7e-38 123.6 0.8 1 1 7.2e-40 3.7e-38 123.1 0.8 1 104 2 103 2 103 0.98 # 14909 # 15367 # 1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.381 1_9 - 151 SSB PF00436.20 104 1e-37 121.8 0.6 1 1 2.5e-39 1.3e-37 121.4 0.6 1 104 2 103 2 103 0.98 # 8445 # 8897 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 2_28 - 159 SSB PF00436.20 104 7.4e-33 106.1 0.1 1 1 2.2e-34 1.1e-32 105.5 0.1 3 104 3 102 1 102 0.96 # 28276 # 28752 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.421 14_1 - 246 Methyltransf_18 PF12847.2 112 1.1e-08 29.3 0.0 1 1 9.8e-11 1.5e-08 28.7 0.0 2 74 30 98 29 151 0.87 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 2_20 - 738 DUF87 PF01935.12 229 4.5e-10 33.2 0.4 1 1 8.6e-12 4.5e-10 33.2 0.4 11 108 222 328 214 436 0.68 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 1_29 - 797 DUF87 PF01935.12 229 1.9e-06 21.3 0.0 1 1 3.7e-08 1.9e-06 21.3 0.0 16 90 450 520 437 611 0.79 # 26248 # 28638 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_17 - 831 DUF87 PF01935.12 229 0.00022 14.6 0.2 1 1 1.8e-05 0.00092 12.6 0.0 27 131 467 569 463 698 0.65 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 2_17 - 831 AAA_22 PF13401.1 131 1.8e-06 21.7 0.0 1 1 1.7e-07 9e-06 19.4 0.0 4 69 463 531 459 625 0.62 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_2 - 701 AAA_22 PF13401.1 131 9e-05 16.2 0.0 1 1 7.9e-06 0.00041 14.0 0.0 8 49 517 572 511 692 0.65 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_20 - 738 AAA_22 PF13401.1 131 0.00068 13.3 0.0 1 1 6.6e-05 0.0034 11.1 0.0 5 68 234 292 232 372 0.81 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 6_1 - 282 ATP_bind_1 PF03029.12 238 0.0011 12.1 0.0 1 1 2.2e-05 0.0034 10.5 0.0 6 106 13 148 6 187 0.78 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 14_1 - 246 Methyltransf_11 PF08241.7 95 0.00014 15.9 0.0 1 1 1.8e-06 0.00028 14.9 0.0 2 59 35 92 34 100 0.86 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 2_20 - 738 AAA_17 PF13207.1 121 2.5e-05 18.7 0.8 1 1 7.3e-07 0.00011 16.5 0.0 7 101 241 349 236 381 0.61 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 1_2 - 701 Miro PF08477.8 119 0.00037 14.5 0.0 1 1 6.7e-06 0.001 13.1 0.0 2 46 516 557 515 572 0.70 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_20 - 738 MobB PF03205.9 140 0.0027 11.0 0.0 1 1 1.7e-05 0.0027 11.0 0.0 3 33 236 266 234 274 0.86 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 6_1 - 282 ArsA_ATPase PF02374.10 305 3.3e-13 42.8 0.3 1 1 9.1e-14 4.7e-12 39.0 0.3 2 137 4 143 3 148 0.64 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 3_12 - 261 ArsA_ATPase PF02374.10 305 1.1e-08 28.0 1.2 1 1 7e-09 3.6e-07 23.0 1.2 9 137 11 128 3 240 0.63 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 4_2 - 274 ArsA_ATPase PF02374.10 305 2.2e-07 23.7 0.1 1 1 9.1e-09 4.7e-07 22.6 0.1 9 137 11 135 3 137 0.69 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 2_20 - 738 T2SE PF00437.15 272 0.00018 14.0 0.0 1 1 2.1e-06 0.00033 13.1 0.0 127 162 232 267 200 277 0.85 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 14_1 - 246 CMAS PF02353.15 273 0.00032 13.4 0.4 1 1 4.2e-06 0.00065 12.3 0.0 51 99 18 65 12 96 0.81 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 3_1 - 125 SMC_N PF02463.14 220 0.0011 11.7 0.5 1 1 1.7e-05 0.0013 11.5 0.5 133 202 31 105 15 113 0.79 # 104 # 478 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.253 1_2 - 701 SMC_N PF02463.14 220 0.0013 11.5 0.3 1 1 5.3e-05 0.0041 9.8 0.3 28 44 517 533 492 691 0.91 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 6_1 - 282 VirC1 PF07015.6 231 1.3e-06 21.2 0.1 1 2 2e-06 0.00031 13.4 0.0 3 40 4 41 2 70 0.86 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 6_1 - 282 VirC1 PF07015.6 231 1.3e-06 21.2 0.1 2 2 0.00039 0.061 5.9 0.0 82 134 131 183 117 199 0.84 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 3_12 - 261 Fer4_NifH PF00142.13 273 6.8e-09 28.8 0.5 1 2 3.7e-09 1.9e-07 24.0 0.0 7 68 10 76 3 90 0.83 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 3_12 - 261 Fer4_NifH PF00142.13 273 6.8e-09 28.8 0.5 2 2 0.0073 0.38 3.4 0.1 153 247 154 253 111 258 0.74 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 282 Fer4_NifH PF00142.13 273 7.6e-08 25.3 0.4 1 1 4.7e-09 2.4e-07 23.7 0.0 8 47 11 50 3 73 0.89 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 4_2 - 274 Fer4_NifH PF00142.13 273 6.5e-05 15.7 0.2 1 1 3.5e-06 0.00018 14.2 0.0 8 59 11 63 3 81 0.79 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 1_2 - 701 AAA_16 PF13191.1 185 0.0001 15.9 0.0 1 1 2.4e-06 0.00018 15.0 0.0 23 54 512 543 501 648 0.82 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_17 - 831 AAA_16 PF13191.1 185 0.001 12.6 0.0 1 1 3.8e-05 0.003 11.1 0.0 25 44 464 483 452 497 0.87 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 2_27 - 324 AAA_23 PF13476.1 202 0.058 7.2 11.5 1 1 0.00012 0.019 8.8 8.3 75 197 68 229 14 230 0.53 # 27165 # 28136 # 1 # ID=2_27;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.362 1_2 - 701 AAA_18 PF13238.1 129 0.0054 10.6 3.8 1 2 9.6e-05 0.015 9.2 0.0 3 40 518 555 517 606 0.69 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 1_2 - 701 AAA_18 PF13238.1 129 0.0054 10.6 3.8 2 2 0.081 13 -0.3 0.0 32 81 634 678 625 689 0.76 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 1_26 - 82 AAA_13 PF13166.1 712 2.2e-05 16.6 6.0 1 1 3e-07 2.3e-05 16.5 6.0 410 458 4 52 2 71 0.88 # 22739 # 22984 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_25 - 203 AAA_13 PF13166.1 712 0.0011 10.9 12.5 1 1 2.2e-06 0.00017 13.6 8.8 352 456 87 192 78 197 0.68 # 22147 # 22755 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 3_12 - 261 CbiA PF01656.18 195 7.2e-40 130.0 0.4 1 1 1.6e-41 8.6e-40 129.7 0.4 1 175 5 202 5 223 0.84 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 282 CbiA PF01656.18 195 7.8e-38 123.3 0.0 1 1 1.9e-39 1e-37 123.0 0.0 1 192 5 234 5 237 0.83 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 4_2 - 274 CbiA PF01656.18 195 3.5e-31 101.6 0.2 1 1 8.2e-33 4.3e-31 101.3 0.2 2 193 6 225 5 227 0.82 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 14_1 - 246 Methyltransf_25 PF13649.1 101 8.3e-06 19.7 0.0 1 1 1.6e-07 2.5e-05 18.2 0.0 1 88 33 112 33 129 0.82 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_2 - 701 AAA_14 PF13173.1 128 0.00025 14.5 0.4 1 2 0.02 1.6 2.2 0.1 61 101 350 400 324 408 0.78 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 1_2 - 701 AAA_14 PF13173.1 128 0.00025 14.5 0.4 2 2 0.00017 0.013 8.9 0.0 2 38 513 557 512 584 0.69 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_17 - 831 AAA_14 PF13173.1 128 0.0015 12.0 3.9 1 1 0.00017 0.014 8.9 0.1 3 42 464 504 462 625 0.78 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 6_7 - 443 TIGR03594 TIGR03594 432 0.00015 14.1 0.2 1 2 0.018 2.8 -0.0 0.0 391 424 86 119 82 126 0.84 # 3649 # 4977 # -1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 6_7 - 443 TIGR03594 TIGR03594 432 0.00015 14.1 0.2 2 2 4.9e-06 0.00077 11.7 0.0 349 424 333 408 280 411 0.90 # 3649 # 4977 # -1 # ID=6_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.409 1_2 - 701 AAA_29 PF13555.1 62 9.5e-06 18.7 0.0 1 1 2.5e-07 2e-05 17.7 0.0 22 44 512 534 502 536 0.81 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_17 - 831 AAA_29 PF13555.1 62 0.00069 12.7 0.2 1 1 3.7e-05 0.0029 10.7 0.1 22 40 463 480 454 489 0.87 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 14_1 - 246 PCMT PF01135.14 210 1.9e-06 21.1 0.0 1 1 2.5e-08 3.8e-06 20.1 0.0 58 120 14 73 2 86 0.83 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 9_3 - 613 N6_Mtase PF02384.11 311 1.2e-07 24.6 0.5 1 2 3.4e-08 5.3e-06 19.2 0.1 26 150 132 284 125 359 0.81 # 1851 # 3689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 9_3 - 613 N6_Mtase PF02384.11 311 1.2e-07 24.6 0.5 2 2 0.0031 0.48 2.9 0.0 66 91 434 459 425 464 0.82 # 1851 # 3689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_23 - 610 TraG-D_C PF12696.2 128 1e-33 109.5 0.0 1 1 2.4e-35 1.8e-33 108.7 0.0 1 124 414 529 414 532 0.91 # 19673 # 21502 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 2_20 - 738 TraG-D_C PF12696.2 128 2.8e-14 46.6 1.0 1 1 4.8e-16 3.8e-14 46.2 0.0 2 126 577 701 576 703 0.80 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 3_12 - 261 AAA_31 PF13614.1 157 1e-14 48.3 0.1 1 1 6e-16 3.1e-14 46.7 0.0 1 155 3 154 3 156 0.82 # 8394 # 9176 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 282 AAA_31 PF13614.1 157 3.2e-11 36.9 0.3 1 1 1.3e-11 6.6e-10 32.7 0.3 8 150 10 164 3 170 0.78 # 367 # 1212 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 4_2 - 274 AAA_31 PF13614.1 157 4.6e-11 36.4 0.2 1 1 2.7e-12 1.4e-10 34.8 0.2 2 154 4 160 3 162 0.75 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 14_1 - 246 Methyltransf_26 PF13659.1 117 1.7e-08 28.1 0.0 1 1 3.6e-10 2.8e-08 27.4 0.0 2 83 31 106 30 200 0.81 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 9_3 - 613 Methyltransf_26 PF13659.1 117 6.3e-06 19.8 0.0 1 1 1.3e-07 1e-05 19.1 0.0 69 104 260 295 175 305 0.80 # 1851 # 3689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 2_20 - 738 FtsK_SpoIIIE PF01580.13 205 5.9e-07 22.7 0.0 1 1 1.9e-08 1.5e-06 21.4 0.0 22 89 216 282 205 299 0.81 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_17 - 831 FtsK_SpoIIIE PF01580.13 205 0.0012 11.9 0.0 1 1 4e-05 0.0031 10.5 0.0 27 79 452 500 435 521 0.78 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 14_1 - 246 MTS PF05175.9 170 2e-07 24.0 0.0 1 1 2.1e-09 3.3e-07 23.4 0.0 24 118 22 113 9 121 0.84 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_2 - 701 ABC_tran PF00005.22 137 1.6e-26 86.8 0.0 1 1 8.3e-28 3.2e-26 85.8 0.0 1 135 503 649 503 651 0.91 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 3_1 - 125 ABC_tran PF00005.22 137 0.00048 14.0 0.0 1 1 1.6e-05 0.00063 13.6 0.0 84 133 20 70 7 73 0.76 # 104 # 478 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.253 2_20 - 738 ABC_tran PF00005.22 137 0.0011 12.8 0.1 1 1 0.00021 0.0081 10.0 0.0 19 71 241 293 231 360 0.70 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_17 - 831 ABC_tran PF00005.22 137 0.0013 12.6 0.1 1 1 0.00017 0.0067 10.3 0.0 13 74 465 527 456 581 0.60 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 9_3 - 613 Eco57I PF07669.6 106 1.3e-31 102.7 1.9 1 1 1.7e-33 2.7e-31 101.6 0.2 1 106 260 359 260 359 0.96 # 1851 # 3689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 2_17 - 831 AAA_19 PF13245.1 76 0.00012 15.4 0.0 1 1 1.5e-06 0.00024 14.4 0.0 9 55 462 504 454 522 0.71 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_29 - 797 AAA_10 PF12846.2 304 5.4e-44 144.3 1.8 1 2 0.056 1.8 1.4 0.1 75 142 99 186 68 357 0.75 # 26248 # 28638 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_29 - 797 AAA_10 PF12846.2 304 5.4e-44 144.3 1.8 2 2 7.1e-45 2.2e-43 142.3 0.2 2 304 459 753 458 753 0.88 # 26248 # 28638 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_17 - 831 AAA_10 PF12846.2 304 5.2e-36 118.1 0.3 1 1 3e-37 9.3e-36 117.3 0.3 1 303 463 769 463 770 0.87 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 2_20 - 738 AAA_10 PF12846.2 304 1.1e-22 74.4 0.4 1 1 5.4e-24 1.7e-22 73.7 0.4 1 297 233 650 233 655 0.82 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 1_23 - 610 AAA_10 PF12846.2 304 1.9e-08 27.6 0.1 1 1 9.7e-10 3e-08 26.9 0.1 1 295 143 487 143 494 0.66 # 19673 # 21502 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 1_2 - 701 AAA_10 PF12846.2 304 0.0002 14.4 0.0 1 1 1.3e-05 0.0004 13.4 0.0 3 37 515 551 513 554 0.85 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 14_1 - 246 NodS PF05401.6 201 1.1e-07 24.9 0.0 1 1 1.2e-09 1.8e-07 24.2 0.0 41 120 27 106 7 116 0.86 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_2 - 701 SbcCD_C PF13558.1 90 0.00013 15.4 0.1 1 1 2.6e-06 0.00041 13.8 0.1 62 85 639 662 616 667 0.81 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_20 - 738 ResIII PF04851.10 184 0.00012 15.4 0.4 1 1 2.9e-06 0.00046 13.6 0.2 4 48 187 256 184 411 0.85 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 14_1 - 246 Methyltransf_31 PF13847.1 152 1.6e-07 24.5 0.1 1 1 1.6e-09 2.4e-07 24.0 0.1 2 76 28 97 27 201 0.87 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 14_1 - 246 TRM13 PF05206.9 259 0.00041 13.1 0.1 1 1 4.3e-06 0.00067 12.4 0.1 4 65 15 76 12 100 0.77 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 14_1 - 246 DOT1 PF08123.8 205 7.7e-05 15.6 0.2 1 2 1.3e-06 0.00021 14.2 0.0 28 84 15 69 11 95 0.79 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 14_1 - 246 DOT1 PF08123.8 205 7.7e-05 15.6 0.2 2 2 0.099 15 -1.7 0.1 83 119 184 220 168 231 0.51 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 2_20 - 738 DEAD PF00270.24 169 7.8e-05 15.7 0.0 1 2 7e-06 0.0011 12.0 0.0 14 40 233 259 215 365 0.66 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_20 - 738 DEAD PF00270.24 169 7.8e-05 15.7 0.0 2 2 0.022 3.4 0.6 0.0 115 142 571 598 544 620 0.75 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_20 - 738 DUF853 PF05872.7 504 2.9e-06 19.3 0.0 1 1 4.3e-08 6.7e-06 18.1 0.0 12 93 224 304 213 313 0.82 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 1_23 - 610 TrwB_AAD_bind PF10412.4 386 8.1e-17 54.3 0.0 1 2 0.00025 0.02 7.0 0.0 13 130 141 266 132 291 0.78 # 19673 # 21502 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 1_23 - 610 TrwB_AAD_bind PF10412.4 386 8.1e-17 54.3 0.0 2 2 6.2e-16 4.8e-14 45.2 0.0 245 377 415 543 350 547 0.90 # 19673 # 21502 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 2_20 - 738 TrwB_AAD_bind PF10412.4 386 8.9e-13 41.1 0.0 1 2 1.2e-06 9.2e-05 14.7 0.0 15 54 233 272 222 281 0.91 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_20 - 738 TrwB_AAD_bind PF10412.4 386 8.9e-13 41.1 0.0 2 2 2e-09 1.6e-07 23.8 0.0 216 345 547 677 490 718 0.72 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_17 - 831 AAA_11 PF13086.1 236 0.00011 15.4 0.2 1 2 0.074 12 -1.1 0.1 140 174 281 313 229 361 0.57 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 2_17 - 831 AAA_11 PF13086.1 236 0.00011 15.4 0.2 2 2 3.6e-06 0.00056 13.0 0.0 7 66 453 504 449 619 0.71 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 4_2 - 274 ParA PF10609.4 81 0.00045 13.7 0.1 1 1 9.2e-06 0.0014 12.0 0.0 2 63 126 191 125 198 0.76 # 2258 # 3079 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 2_16 - 153 tRNA_anti_2 PF13742.1 99 0.00067 13.1 0.0 1 1 6.6e-06 0.001 12.5 0.0 50 85 47 81 27 97 0.80 # 14909 # 15367 # 1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.381 1_23 - 610 T4SS-DNA_transf PF02534.9 469 9.4e-51 166.3 0.0 1 1 7.9e-53 1.2e-50 165.9 0.0 45 451 144 558 106 583 0.84 # 19673 # 21502 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 14_1 - 246 TIGR00755 TIGR00755 256 3.9e-44 144.0 3.2 1 1 3e-46 4.7e-44 143.8 3.2 5 227 5 221 1 235 0.88 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 14_1 - 246 Methyltransf_23 PF13489.1 161 1.7e-06 21.4 0.1 1 1 3.2e-08 4.9e-06 19.9 0.1 7 60 16 85 9 225 0.82 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 2_17 - 831 RNA_helicase PF00910.17 107 0.00034 14.4 0.1 1 2 0.02 3.2 1.6 0.0 26 86 272 347 251 359 0.64 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 2_17 - 831 RNA_helicase PF00910.17 107 0.00034 14.4 0.1 2 2 0.00011 0.017 8.9 0.0 2 19 467 484 466 509 0.80 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_9 - 151 tRNA_anti-codon PF01336.20 75 6.1e-07 22.8 0.1 1 1 2.2e-08 1.1e-06 22.0 0.1 27 73 47 96 34 103 0.79 # 8445 # 8897 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380 2_16 - 153 tRNA_anti-codon PF01336.20 75 8.4e-07 22.4 0.1 1 1 2.6e-08 1.3e-06 21.7 0.1 27 72 47 95 5 103 0.86 # 14909 # 15367 # 1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_28 - 159 tRNA_anti-codon PF01336.20 75 1.7e-06 21.4 0.1 1 1 5.6e-08 2.9e-06 20.6 0.1 26 73 45 100 13 102 0.83 # 28276 # 28752 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.421 2_20 - 738 UvrD-helicase PF00580.16 315 0.0012 11.7 2.9 1 3 0.016 2.5 0.8 0.0 180 228 158 206 60 219 0.67 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_20 - 738 UvrD-helicase PF00580.16 315 0.0012 11.7 2.9 2 3 8.1e-05 0.013 8.3 0.0 12 34 232 254 226 269 0.81 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_20 - 738 UvrD-helicase PF00580.16 315 0.0012 11.7 2.9 3 3 0.014 2.2 0.9 0.5 145 217 349 419 270 583 0.61 # 20666 # 22879 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.375 1_2 - 701 NACHT PF05729.7 166 0.00015 15.0 0.0 1 2 0.035 5.5 0.1 0.0 79 99 348 368 341 389 0.71 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 1_2 - 701 NACHT PF05729.7 166 0.00015 15.0 0.0 2 2 8e-06 0.0013 12.0 0.0 4 22 517 535 514 539 0.90 # 1350 # 3452 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.261 2_17 - 831 AAA_25 PF13481.1 194 0.00097 12.1 0.0 1 1 2e-05 0.0031 10.4 0.0 31 157 461 591 451 608 0.56 # 15472 # 17964 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 14_1 - 246 Methyltransf_4 PF02390.12 197 9.3e-05 15.0 0.3 1 1 1.1e-06 0.00017 14.2 0.1 17 90 27 93 3 102 0.66 # 281 # 1018 # 1 # ID=14_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/da049e79-400f-4c75-969e-1b237a554de4 # Target file: checkm_output/bins/pGCA_000007785.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000007785.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/da049e79-400f-4c75-969e-1b237a554de4 checkm_output/bins/pGCA_000007785.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:26 2020 # [ok]