# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 576 cobW PF02492.14 178 7e-05 14.7 0.7 1 2 4.7e-05 0.0017 10.3 0.0 4 20 367 383 365 404 0.89 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 cobW PF02492.14 178 7e-05 14.7 0.7 2 2 0.013 0.45 2.3 0.1 33 63 514 552 497 571 0.57 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_10 - 272 cobW PF02492.14 178 0.00062 11.7 0.2 1 1 4e-05 0.0014 10.5 0.1 126 171 102 156 63 162 0.72 # 10926 # 11741 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 2_9 - 194 RuvB_C PF05491.8 76 0.00046 12.3 0.4 1 2 0.038 2.7 0.2 0.1 55 67 121 133 117 139 0.82 # 6879 # 7460 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.326 2_9 - 194 RuvB_C PF05491.8 76 0.00046 12.3 0.4 2 2 8.7e-05 0.0062 8.7 0.0 6 43 145 178 142 182 0.86 # 6879 # 7460 # 1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.326 2_5 - 612 IstB_IS21 PF01695.12 178 0.00039 12.3 0.2 1 2 0.00027 0.019 6.8 0.0 41 63 9 33 4 35 0.87 # 1660 # 3495 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 2_5 - 612 IstB_IS21 PF01695.12 178 0.00039 12.3 0.2 2 2 0.0066 0.47 2.3 0.0 93 121 127 155 92 167 0.81 # 1660 # 3495 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 2_6 - 138 Usp PF00582.21 140 3.6e-25 81.2 0.0 1 1 6e-27 4.2e-25 81.0 0.0 1 140 1 137 1 137 0.93 # 3879 # 4292 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_10 - 272 AAA_22 PF13401.1 131 7.9e-28 89.6 0.0 1 1 5.8e-29 1.4e-27 88.9 0.0 2 131 25 171 24 171 0.87 # 10926 # 11741 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 2_5 - 612 AAA_22 PF13401.1 131 9.5e-10 31.2 1.8 1 1 1.3e-10 3e-09 29.5 0.2 7 125 20 185 14 190 0.68 # 1660 # 3495 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 1_20 - 576 AAA_22 PF13401.1 131 1.2e-06 21.1 0.2 1 2 2.4e-06 5.7e-05 15.7 0.0 4 30 363 389 359 421 0.84 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_22 PF13401.1 131 1.2e-06 21.1 0.2 2 2 0.025 0.59 2.7 0.1 79 113 486 523 437 539 0.74 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 2_5 - 612 KAP_NTPase PF07693.9 325 1e-37 122.2 11.5 1 1 1.4e-39 1e-37 122.2 11.5 3 324 3 273 1 274 0.89 # 1660 # 3495 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 1_20 - 576 AAA_17 PF13207.1 121 6.6e-07 22.6 0.1 1 1 3.2e-08 2.3e-06 20.9 0.1 4 43 368 403 366 469 0.72 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 2_19 - 281 AAA_4 PF04326.9 122 1.7e-10 33.6 1.9 1 2 2.4e-12 1.7e-10 33.6 1.9 36 120 13 107 1 110 0.82 # 16329 # 17171 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.267 2_19 - 281 AAA_4 PF04326.9 122 1.7e-10 33.6 1.9 2 2 0.081 5.7 -0.4 0.7 118 118 152 152 108 233 0.53 # 16329 # 17171 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.267 1_20 - 576 T2SE PF00437.15 272 7.8e-05 14.0 0.1 1 1 2.3e-06 0.00016 13.0 0.1 114 150 349 385 314 408 0.80 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 SMC_N PF02463.14 220 7.5e-07 21.0 9.1 1 2 0.00017 0.012 7.2 0.2 27 44 366 383 344 394 0.76 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 SMC_N PF02463.14 220 7.5e-07 21.0 9.1 2 2 3.6e-08 2.5e-06 19.2 0.5 108 210 430 545 411 551 0.88 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_16 PF13191.1 185 1.9e-05 17.1 0.0 1 1 7.2e-07 5.1e-05 15.7 0.0 20 44 359 382 350 391 0.81 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_18 PF13238.1 129 0.00015 14.6 0.1 1 2 2.1e-06 0.00015 14.6 0.1 2 28 367 403 366 440 0.75 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_18 PF13238.1 129 0.00015 14.6 0.1 2 2 0.09 6.4 -0.5 0.3 27 69 499 529 450 571 0.52 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_14 PF13173.1 128 0.00013 14.4 3.5 1 2 4.1e-06 0.00029 13.2 0.1 3 47 364 408 362 433 0.72 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_14 PF13173.1 128 0.00013 14.4 3.5 2 2 0.04 2.8 0.3 0.1 52 72 488 504 445 564 0.57 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_29 PF13555.1 62 4.1e-06 18.8 0.1 1 1 1.4e-07 9.6e-06 17.6 0.1 16 41 357 381 351 386 0.82 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA PF00004.24 132 6.6e-06 18.8 0.6 1 1 2.8e-06 0.0001 15.0 0.6 3 113 368 535 366 552 0.65 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_10 - 272 AAA PF00004.24 132 1.4e-05 17.8 1.0 1 1 1.2e-05 0.00043 12.9 1.0 3 110 32 166 31 189 0.65 # 10926 # 11741 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_20 - 576 DUF258 PF03193.11 161 1.4e-07 23.3 0.4 1 1 5.7e-09 4.1e-07 21.7 0.0 16 64 343 392 331 412 0.84 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_30 PF13604.1 196 0.0001 14.3 0.0 1 2 5.7e-06 0.0004 12.4 0.0 16 67 362 414 356 442 0.72 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_30 PF13604.1 196 0.0001 14.3 0.0 2 2 0.073 5.2 -1.0 0.0 90 116 482 517 450 528 0.67 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 FtsK_SpoIIIE PF01580.13 205 0.00017 13.5 0.0 1 1 4.8e-06 0.00034 12.5 0.0 23 58 347 383 337 384 0.89 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 ABC_tran PF00005.22 137 2.6e-34 110.9 0.5 1 1 3.7e-36 2.6e-34 110.9 0.5 1 137 353 504 353 504 0.94 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 2_6 - 138 SAM_MT PF04445.8 235 1.1e-05 17.1 0.1 1 1 1.9e-07 1.3e-05 16.8 0.1 9 110 34 135 29 137 0.83 # 3879 # 4292 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 1_20 - 576 AAA_19 PF13245.1 76 4.4e-06 18.9 0.0 1 1 1.3e-07 9.1e-06 17.9 0.0 8 37 361 389 356 402 0.86 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 AAA_10 PF12846.2 304 0.00011 14.1 0.0 1 1 4.1e-06 0.00029 12.7 0.0 4 24 366 386 363 403 0.81 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 SbcCD_C PF13558.1 90 1.8e-05 17.1 0.4 1 2 0.014 1 1.8 0.1 27 40 470 483 456 486 0.75 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 1_20 - 576 SbcCD_C PF13558.1 90 1.8e-05 17.1 0.4 2 2 5.6e-06 0.0004 12.8 0.0 63 88 493 518 487 520 0.88 # 20040 # 21767 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237 3_8 - 175 TIGR00019 TIGR00019 361 0.0035 8.3 4.7 1 1 6.6e-05 0.0047 7.9 4.7 15 100 4 87 2 91 0.89 # 7155 # 7679 # 1 # ID=3_8;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_10 - 272 DEAD PF00270.24 169 0.00089 11.2 1.7 1 1 4.1e-05 0.0029 9.5 1.7 111 144 120 152 29 235 0.86 # 10926 # 11741 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 2_5 - 612 Sigma54_activ_2 PF14532.1 138 2.7e-06 19.9 0.0 1 2 0.0051 0.36 3.3 0.0 19 37 15 33 1 56 0.79 # 1660 # 3495 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 2_5 - 612 Sigma54_activ_2 PF14532.1 138 2.7e-06 19.9 0.0 2 2 3.6e-06 0.00026 13.5 0.0 53 125 126 201 110 212 0.81 # 1660 # 3495 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 1_9 - 327 AlaDh_PNT_C PF01262.16 168 0.00015 13.7 0.1 1 1 3.2e-06 0.00023 13.2 0.1 53 145 32 117 5 140 0.79 # 9728 # 10708 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/51440e43-ea5e-4f46-9556-384e84c2d771 # Target file: checkm_output/bins/pGCA_000007645.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000007645.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/51440e43-ea5e-4f46-9556-384e84c2d771 checkm_output/bins/pGCA_000007645.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:25 2020 # [ok]