# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 195 MipZ PF09140.6 261 9e-10 28.4 1.5 1 1 1.1e-08 1.9e-07 20.8 1.5 5 136 5 114 1 127 0.78 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_14 - 302 NB-ARC PF00931.17 287 0.00023 10.4 1.8 1 1 1.4e-05 0.00024 10.3 0.3 15 37 27 49 17 53 0.82 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_22 PF13401.1 131 3.9e-07 20.7 0.1 1 1 1.1e-07 1.8e-06 18.6 0.1 8 95 35 161 28 190 0.82 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 MutS_V PF00488.16 235 2.9e-05 13.9 0.0 1 1 3e-06 5.1e-05 13.1 0.0 23 63 11 51 4 64 0.81 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_21 PF13304.1 303 1.5e-16 51.5 0.2 1 2 9.7e-09 1.6e-07 21.9 0.5 3 23 35 55 33 72 0.84 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_21 PF13304.1 303 1.5e-16 51.5 0.2 2 2 2.3e-10 3.9e-09 27.2 0.0 181 297 76 193 62 198 0.82 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 MobB PF03205.9 140 7.3e-06 16.1 0.1 1 1 9e-07 1.5e-05 15.1 0.1 2 33 33 64 32 67 0.91 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_2 - 195 ArsA_ATPase PF02374.10 305 8.4e-08 21.9 0.0 1 1 6e-09 1e-07 21.6 0.0 1 44 1 44 1 80 0.89 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_14 - 302 T2SE PF00437.15 272 0.00017 10.9 0.2 1 1 2.2e-05 0.00038 9.8 0.1 125 155 28 58 5 64 0.80 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 SMC_N PF02463.14 220 5.2e-06 16.2 0.7 1 2 1e-05 0.00017 11.2 0.2 25 44 32 51 21 61 0.81 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 SMC_N PF02463.14 220 5.2e-06 16.2 0.7 2 2 0.0039 0.067 2.7 0.0 124 203 117 199 91 214 0.68 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_2 - 195 VirC1 PF07015.6 231 1.9e-12 37.1 0.0 1 1 3.2e-13 5.5e-12 35.6 0.1 4 129 3 122 1 126 0.85 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_14 - 302 Arch_ATPase PF01637.13 234 5.6e-05 13.3 0.0 1 1 5.1e-06 8.7e-05 12.7 0.0 20 66 31 77 25 132 0.74 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_16 PF13191.1 185 2.3e-06 18.1 0.0 1 1 2.2e-07 3.7e-06 17.4 0.0 23 104 30 113 20 190 0.76 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_23 PF13476.1 202 1.5e-06 19.0 0.1 1 1 1.5e-07 2.6e-06 18.2 0.1 16 47 25 62 12 144 0.66 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_2 - 195 CbiA PF01656.18 195 3.5e-20 62.6 0.0 1 1 6.2e-21 1e-19 61.0 0.0 2 190 4 164 3 169 0.76 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_14 - 302 AAA_29 PF13555.1 62 6.3e-08 22.6 0.1 1 1 8e-09 1.4e-07 21.5 0.1 15 55 24 64 19 67 0.79 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 DUF258 PF03193.11 161 0.00013 11.6 0.2 1 1 1.5e-05 0.00025 10.7 0.2 31 61 26 57 4 69 0.76 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_2 - 195 AAA_31 PF13614.1 157 5.4e-05 13.6 0.0 1 2 0.00012 0.0021 8.4 0.0 8 41 8 41 2 48 0.83 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_2 - 195 AAA_31 PF13614.1 157 5.4e-05 13.6 0.0 2 2 0.0051 0.086 3.2 0.0 120 155 79 113 67 115 0.87 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_14 - 302 NTPase_1 PF03266.10 168 0.00018 11.6 2.2 1 2 9.7e-05 0.0016 8.5 0.1 2 30 34 62 33 68 0.88 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 NTPase_1 PF03266.10 168 0.00018 11.6 2.2 2 2 0.018 0.31 1.1 0.0 23 62 253 291 250 299 0.85 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_33 PF13671.1 143 0.00026 11.3 0.6 1 1 3.9e-05 0.00066 10.0 0.4 1 19 33 51 33 62 0.84 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_30 PF13604.1 196 2e-05 14.6 0.0 1 1 3.3e-06 5.6e-05 13.2 0.0 16 50 29 63 24 69 0.87 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 ABC_tran PF00005.22 137 2.4e-34 109.0 0.0 1 1 2.8e-35 4.8e-34 108.0 0.0 1 137 21 164 21 164 0.95 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_19 PF13245.1 76 6.9e-05 13.1 0.0 1 1 1.1e-05 0.00018 11.7 0.0 9 37 30 57 24 74 0.83 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_10 PF12846.2 304 8.9e-09 25.5 0.6 1 2 1.7e-06 1.5e-05 14.9 0.7 6 32 36 62 32 71 0.90 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_10 PF12846.2 304 8.9e-09 25.5 0.6 2 2 0.00016 0.0014 8.4 0.0 218 276 151 208 71 218 0.81 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_2 - 195 AAA_10 PF12846.2 304 0.00018 11.4 0.0 1 1 2.7e-05 0.00023 11.0 0.0 11 50 11 52 4 111 0.87 # 388 # 972 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_14 - 302 SbcCD_C PF13558.1 90 0.0001 12.7 0.0 1 1 1.1e-05 0.00019 11.8 0.0 32 80 124 170 105 180 0.81 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 ArgK PF03308.11 267 3.3e-06 16.4 0.2 1 1 3.9e-07 6.7e-06 15.4 0.2 18 61 20 63 3 65 0.85 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 NACHT PF05729.7 166 2.5e-05 14.4 0.6 1 1 3.6e-06 6.1e-05 13.1 0.6 2 28 33 59 32 66 0.85 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 1_14 - 302 AAA_25 PF13481.1 194 3.9e-05 13.5 0.1 1 1 5.8e-06 9.9e-05 12.2 0.1 29 65 27 66 5 84 0.77 # 8758 # 9663 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.480 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c8e63660-da09-40ae-b9b7-4919f4d45ffa # Target file: checkm_output/bins/pGCA_000006605.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000006605.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c8e63660-da09-40ae-b9b7-4919f4d45ffa checkm_output/bins/pGCA_000006605.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:24 2020 # [ok]