# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 185 OmdA PF13376.1 63 9.5e-05 13.2 0.0 1 1 7.7e-06 0.00021 12.1 0.0 40 59 115 134 109 137 0.86 # 1621 # 2175 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.564 1_5 - 285 RrnaAD PF00398.15 262 1.4e-71 231.6 0.0 1 1 6.2e-73 1.7e-71 231.3 0.0 3 259 6 254 4 256 0.96 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 640 FeoB_N PF02421.13 156 8.6e-06 16.2 0.1 1 1 1.1e-06 3e-05 14.4 0.1 32 120 53 135 50 159 0.84 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 285 Methyltransf_18 PF12847.2 112 1.5e-05 16.6 0.0 1 1 8.7e-07 2.4e-05 16.0 0.0 3 69 35 95 33 180 0.73 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 285 Methyltransf_11 PF08241.7 95 0.00016 13.3 0.0 1 1 1e-05 0.00027 12.5 0.0 2 57 38 92 37 103 0.89 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 640 Miro PF08477.8 119 5.4e-08 24.5 0.0 1 1 3.9e-09 1.1e-07 23.5 0.0 7 119 11 131 5 131 0.87 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 285 Methyltransf_25 PF13649.1 101 5.5e-06 17.8 0.0 1 1 3.7e-07 1e-05 17.0 0.0 1 92 36 117 36 119 0.86 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 640 TIGR03594 TIGR03594 432 4.8e-10 29.7 0.1 1 3 0.017 0.45 0.1 0.0 176 211 4 42 1 47 0.81 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 640 TIGR03594 TIGR03594 432 4.8e-10 29.7 0.1 2 3 3.3e-09 9e-08 22.2 0.2 29 124 49 136 40 154 0.84 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 640 TIGR03594 TIGR03594 432 4.8e-10 29.7 0.1 3 3 0.0017 0.046 3.4 0.0 305 347 197 239 186 256 0.85 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 640 MMR_HSR1 PF01926.18 116 8.8e-09 26.5 0.0 1 1 5.9e-10 1.6e-08 25.6 0.0 2 116 6 129 5 129 0.67 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_4 - 870 N6_Mtase PF02384.11 311 1e-07 22.3 0.0 1 1 1.6e-08 4.4e-07 20.2 0.0 43 186 310 500 294 506 0.80 # 4474 # 7083 # -1 # ID=2_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.542 2_4 - 870 Methyltransf_26 PF13659.1 117 2.3e-12 38.1 0.0 1 1 3.8e-13 5.1e-12 37.0 0.0 3 116 316 498 314 499 0.76 # 4474 # 7083 # -1 # ID=2_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.542 1_5 - 285 Methyltransf_26 PF13659.1 117 1.9e-09 28.7 0.1 1 1 2.1e-10 2.9e-09 28.1 0.1 4 90 36 111 33 149 0.79 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 285 MTS PF05175.9 170 3.8e-08 23.9 0.0 1 1 2.2e-09 5.9e-08 23.3 0.0 28 114 29 110 5 119 0.83 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 2_1 - 136 RuvB_N PF05496.7 234 0.00025 11.2 0.0 1 1 1.1e-05 0.0003 10.9 0.0 91 146 48 105 37 128 0.79 # 21 # 428 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 1_5 - 285 NodS PF05401.6 201 0.00026 11.4 0.0 1 1 1.4e-05 0.00037 11.0 0.0 41 102 30 90 17 108 0.80 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 640 GTP_EFTU_D2 PF03144.20 74 4.4e-08 24.3 0.0 1 1 3.4e-09 9.1e-08 23.3 0.0 4 73 266 327 263 328 0.86 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 285 TIGR00755 TIGR00755 256 3.1e-47 151.7 0.0 1 1 1.4e-48 3.8e-47 151.4 0.0 4 254 8 253 6 255 0.95 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 285 Methyltransf_23 PF13489.1 161 7.3e-06 16.8 0.0 1 1 4.3e-07 1.2e-05 16.2 0.0 20 60 30 82 9 122 0.79 # 3659 # 4513 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_6 - 640 GTP_EFTU PF00009.22 188 1.1e-63 205.1 0.1 1 1 5.6e-65 1.5e-63 204.7 0.1 2 186 2 238 1 240 0.92 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 640 EFG_IV PF03764.13 120 7.1e-26 81.2 0.0 1 1 5.7e-27 1.5e-25 80.1 0.0 1 119 416 531 416 532 0.98 # 4678 # 6597 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d1d342df-bac8-4256-a557-a5d7a0cf616f # Target file: checkm_output/bins/pFN825254.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pFN825254.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d1d342df-bac8-4256-a557-a5d7a0cf616f checkm_output/bins/pFN825254.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:24 2020 # [ok]