# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 199 Thymidylate_kin PF02223.12 186 0.00034 11.2 0.0 1 1 2e-05 0.00058 10.4 0.0 6 35 13 43 12 54 0.83 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 MipZ PF09140.6 261 2.6e-11 34.2 0.2 1 2 1.1e-09 3.3e-08 24.0 0.1 2 46 4 47 3 55 0.87 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 MipZ PF09140.6 261 2.6e-11 34.2 0.2 2 2 6.1e-05 0.0018 8.5 0.0 91 136 71 115 58 145 0.87 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_5 - 1493 UvrD_C_2 PF13538.1 104 1.7e-09 29.0 0.1 1 1 2.4e-10 6.9e-09 27.0 0.1 16 98 849 934 832 940 0.72 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_16 - 214 NmrA PF05368.8 233 1.5e-12 38.3 0.0 1 1 7.2e-14 2.1e-12 37.9 0.0 1 96 3 98 3 112 0.86 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_5 - 1493 AAA_22 PF13401.1 131 7.9e-05 14.0 0.1 1 1 4.9e-05 0.0014 9.9 0.1 10 41 587 613 581 706 0.54 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_7 - 199 ATP_bind_1 PF03029.12 238 1.1e-05 16.2 0.0 1 2 0.00029 0.0085 6.7 0.0 6 43 13 50 11 54 0.89 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 ATP_bind_1 PF03029.12 238 1.1e-05 16.2 0.0 2 2 0.00024 0.0071 7.0 0.0 146 178 118 149 109 195 0.75 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 MobB PF03205.9 140 4.7e-06 17.5 0.1 1 1 4.8e-07 1.4e-05 16.0 0.0 7 36 10 38 4 47 0.82 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 LpxK PF02606.9 326 5.6e-06 16.6 0.3 1 1 3.7e-07 1.1e-05 15.6 0.1 45 70 11 36 2 46 0.91 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 ArsA_ATPase PF02374.10 305 5.5e-06 16.7 0.2 1 2 9.4e-07 2.7e-05 14.4 0.1 6 42 8 44 2 62 0.89 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 ArsA_ATPase PF02374.10 305 5.5e-06 16.7 0.2 2 2 0.026 0.76 -0.2 0.0 117 139 67 90 51 93 0.73 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 AAA_26 PF13500.1 199 0.00011 13.0 0.1 1 1 3.6e-06 0.00011 13.0 0.1 3 56 5 54 3 172 0.87 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 VirC1 PF07015.6 231 1.2e-10 32.0 0.1 1 2 2.8e-07 8.1e-06 16.2 0.0 3 49 4 50 2 55 0.91 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 VirC1 PF07015.6 231 1.2e-10 32.0 0.1 2 2 1.3e-06 3.7e-05 14.0 0.0 87 142 81 130 72 173 0.80 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 Fer4_NifH PF00142.13 273 1.4e-05 15.5 0.0 1 1 7.9e-07 2.3e-05 14.8 0.0 5 48 8 51 3 71 0.86 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 CbiA PF01656.18 195 4.6e-21 66.2 0.1 1 1 7.4e-22 2.1e-20 64.1 0.1 1 177 5 157 5 183 0.79 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 AAA_31 PF13614.1 157 8.2e-06 17.0 0.0 1 2 5.1e-06 0.00015 12.9 0.0 1 37 3 39 3 48 0.86 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 AAA_31 PF13614.1 157 8.2e-06 17.0 0.0 2 2 0.012 0.34 2.0 0.0 120 154 80 113 64 116 0.86 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_5 - 1493 AAA_30 PF13604.1 196 4.6e-59 190.4 2.3 1 2 2.1e-59 3e-58 187.8 0.0 1 194 564 766 564 768 0.96 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_5 - 1493 AAA_30 PF13604.1 196 4.6e-59 190.4 2.3 2 2 0.076 1.1 -0.1 0.0 133 162 780 809 771 851 0.66 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_7 - 199 AAA_30 PF13604.1 196 7.1e-06 16.8 0.2 1 1 8.2e-07 1.2e-05 16.1 0.2 19 52 4 37 1 48 0.91 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_5 - 1493 AAA_19 PF13245.1 76 1.3e-11 35.4 1.1 1 2 2.4e-09 3.5e-08 24.4 0.1 17 75 588 639 585 640 0.90 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_5 - 1493 AAA_19 PF13245.1 76 1.3e-11 35.4 1.1 2 2 0.00019 0.0027 8.7 0.1 29 63 774 808 768 824 0.78 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_7 - 199 AAA_19 PF13245.1 76 0.0001 13.3 1.5 1 1 1.8e-05 0.00026 11.9 0.0 12 46 5 35 2 57 0.76 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_16 - 214 RmlD_sub_bind PF04321.12 287 1.6e-07 21.6 0.0 1 2 2.6e-08 7.6e-07 19.4 0.0 1 97 1 100 1 103 0.62 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_16 - 214 RmlD_sub_bind PF04321.12 287 1.6e-07 21.6 0.0 2 2 0.073 2.1 -1.8 0.0 216 233 185 202 181 208 0.82 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_16 - 214 NAD_binding_10 PF13460.1 183 8e-31 98.6 0.0 1 1 3.1e-32 9.1e-31 98.4 0.0 1 182 3 201 3 202 0.87 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_5 - 1493 Helicase_RecD PF05127.9 177 0.00014 12.7 0.1 1 1 2.2e-05 0.00064 10.5 0.0 6 112 590 686 587 692 0.85 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_16 - 214 3Beta_HSD PF01073.14 280 4.7e-05 13.3 0.0 1 1 2.7e-06 7.9e-05 12.5 0.0 1 112 4 101 4 108 0.78 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_5 - 1493 Viral_helicase1 PF01443.13 234 2.5e-07 21.5 0.1 1 2 0.004 0.12 3.0 0.0 62 103 664 707 588 731 0.83 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_5 - 1493 Viral_helicase1 PF01443.13 234 2.5e-07 21.5 0.1 2 2 5.9e-07 1.7e-05 15.5 0.2 161 233 876 940 839 941 0.73 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_16 - 214 Epimerase PF01370.16 236 3e-09 27.8 0.1 1 1 2.2e-10 6.5e-09 26.7 0.1 1 115 3 103 3 123 0.80 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_5 - 1493 AAA_11 PF13086.1 236 3e-06 18.1 8.4 1 2 0.00089 0.026 5.2 0.0 23 73 587 629 564 641 0.83 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_5 - 1493 AAA_11 PF13086.1 236 3e-06 18.1 8.4 2 2 1.2e-06 3.5e-05 14.6 0.0 192 232 664 707 652 708 0.75 # 1908 # 6386 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_16 - 214 DapB_N PF01113.15 124 1.7e-05 15.9 0.1 1 1 1.2e-06 3.5e-05 14.9 0.1 1 79 1 75 1 107 0.70 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_25 - 615 TIGR00460 TIGR00460 315 8.1e-09 25.8 0.0 1 1 4.2e-10 1.2e-08 25.2 0.0 94 147 40 93 38 95 0.94 # 23459 # 25303 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_7 - 199 GTP_EFTU PF00009.22 188 3.8e-06 17.6 0.0 1 1 1.7e-07 4.9e-06 17.2 0.0 14 148 14 154 2 188 0.77 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_16 - 214 TrkA_N PF02254.13 116 0.00011 13.4 0.0 1 1 5.3e-06 0.00015 12.9 0.0 1 70 3 71 3 96 0.86 # 16743 # 17384 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 1_7 - 199 APS_kinase PF01583.15 157 2.7e-05 15.0 0.1 1 2 4.4e-06 0.00013 12.8 0.0 11 39 12 40 4 46 0.91 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 1_7 - 199 APS_kinase PF01583.15 157 2.7e-05 15.0 0.1 2 2 0.076 2.2 -0.9 0.0 67 92 94 119 90 143 0.80 # 6717 # 7313 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.513 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/47c000db-cfa1-40cd-b2e6-4e0d6fb4a8a6 # Target file: checkm_output/bins/pFM164414.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pFM164414.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/47c000db-cfa1-40cd-b2e6-4e0d6fb4a8a6 checkm_output/bins/pFM164414.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:24 2020 # [ok]